Wall clock time and date at job start Mon Mar 30 2020 20:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46903 * 109.46889 * 239.99675 * 2 1 3 13 13 C 1.46843 * 111.00081 * 306.04532 * 12 2 1 14 14 C 1.53042 * 109.52094 * 185.84094 * 13 12 2 15 15 C 1.53113 * 109.27683 * 300.82213 * 14 13 12 16 16 C 1.53117 * 109.16221 * 57.65479 * 15 14 13 17 17 C 1.53005 * 109.50213 * 182.36072 * 16 15 14 18 18 O 1.42897 * 109.50100 * 62.28727 * 16 15 14 19 19 C 1.46844 * 110.99799 * 70.25820 * 12 2 1 20 20 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 21 21 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 22 22 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 23 23 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 24 24 H 1.08999 * 109.46678 * 305.86105 * 13 12 2 25 25 H 1.09003 * 109.46382 * 65.82959 * 13 12 2 26 26 H 1.08994 * 109.49926 * 60.76456 * 14 13 12 27 27 H 1.09004 * 109.49900 * 180.84576 * 14 13 12 28 28 H 1.09003 * 109.52028 * 177.55903 * 15 14 13 29 29 H 1.09003 * 109.52536 * 297.68517 * 15 14 13 30 30 H 1.08990 * 109.46937 * 60.00401 * 17 16 15 31 31 H 1.09005 * 109.46776 * 180.02562 * 17 16 15 32 32 H 1.08999 * 109.47233 * 299.99707 * 17 16 15 33 33 H 0.96699 * 114.00340 * 59.99935 * 18 16 15 34 34 H 1.08996 * 109.46666 * 294.17554 * 19 12 2 35 35 H 1.09002 * 109.46041 * 54.14696 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.3426 -2.1615 4.4119 10 1 3.6292 -1.7582 3.7123 11 1 2.4864 -0.1412 5.1123 12 7 2.0196 -0.6926 -1.1994 13 6 1.4345 -2.0350 -1.3077 14 6 2.0744 -2.7786 -2.4823 15 6 1.8318 -1.9902 -3.7722 16 6 2.4080 -0.5803 -3.6153 17 6 2.1179 0.2335 -4.8782 18 8 3.8204 -0.6618 -3.4144 19 6 1.7584 0.0996 -2.4080 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3635 -1.0276 0.0005 23 1 0.7088 1.1615 3.4843 24 1 1.6176 -2.5866 -0.3855 25 1 0.3604 -1.9508 -1.4730 26 1 3.1465 -2.8754 -2.3110 27 1 1.6292 -3.7696 -2.5716 28 1 2.3230 -2.4939 -4.6048 29 1 0.7608 -1.9276 -3.9650 30 1 1.0405 0.2965 -5.0302 31 1 2.5288 1.2369 -4.7661 32 1 2.5784 -0.2533 -5.7379 33 1 4.2974 -1.0854 -4.1411 34 1 0.6829 0.1739 -2.5681 35 1 2.1770 1.0985 -2.2849 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252727816.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:24 Heat of formation + Delta-G solvation = -54.417084 kcal Electronic energy + Delta-G solvation = -15364.131362 eV Core-core repulsion = 12975.740072 eV Total energy + Delta-G solvation = -2388.391290 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.18450 -36.10697 -33.36780 -31.73908 -31.00638 -28.32708 -26.25108 -25.15603 -23.53492 -21.68716 -20.03529 -18.75916 -16.13876 -15.94197 -15.35400 -14.56016 -14.30437 -13.97546 -13.60401 -13.36461 -12.67116 -12.59813 -12.17055 -11.77835 -11.63403 -11.42118 -11.18467 -10.93106 -10.73159 -10.57026 -10.41457 -10.32207 -10.20738 -9.88747 -9.42884 -9.35133 -8.78782 -8.31684 -6.96910 -5.94306 -3.97014 3.35260 3.41613 3.46822 4.46649 4.55931 4.93655 5.03105 5.19183 5.36991 5.39935 5.48633 5.73272 5.76330 5.95857 6.03658 6.14555 6.22334 6.25387 6.30205 6.38376 6.54305 6.74141 6.84490 6.89598 6.92256 7.19729 7.56096 7.78116 7.92563 8.09456 8.26495 8.48732 8.70863 9.09532 9.67569 11.13015 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046611 B = 0.008709 C = 0.008302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.575399 B = 3214.245117 C = 3371.780438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.038 0.962 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.519 5.519 13 C 0.063 3.937 14 C -0.115 4.115 15 C -0.142 4.142 16 C 0.132 3.868 17 C -0.176 4.176 18 O -0.536 6.536 19 C 0.071 3.929 20 H 0.088 0.912 21 H 0.005 0.995 22 H 0.030 0.970 23 H 0.259 0.741 24 H 0.081 0.919 25 H 0.020 0.980 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.359 0.641 34 H 0.035 0.965 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.520 -3.862 -12.410 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 H 0.056 0.944 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.214 1.214 12 N -0.242 5.242 13 C -0.066 4.066 14 C -0.152 4.152 15 C -0.180 4.180 16 C 0.091 3.909 17 C -0.235 4.235 18 O -0.339 6.339 19 C -0.058 4.058 20 H 0.106 0.894 21 H 0.024 0.976 22 H 0.049 0.951 23 H 0.069 0.931 24 H 0.099 0.901 25 H 0.038 0.962 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.204 0.796 34 H 0.052 0.948 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.796 -3.488 -11.637 12.174 hybrid contribution -0.617 -0.565 0.184 0.857 sum 0.178 -4.053 -11.453 12.150 Atomic orbital electron populations 1.22415 1.01032 0.99289 1.00363 1.19309 0.89537 0.94540 0.86211 0.94433 1.21118 1.30153 1.12333 0.89606 0.91966 1.24935 0.95370 0.95179 0.98976 1.69892 1.37376 1.23136 1.23259 0.86526 0.79252 0.79239 0.82564 1.20913 1.19839 1.21357 1.62149 1.58711 1.01607 1.01754 1.21944 0.94977 0.91646 0.97995 1.21565 1.02190 0.97170 0.94312 1.22241 1.00863 0.96544 0.98330 1.21279 0.81890 0.93522 0.94195 1.22475 1.02091 1.01228 0.97663 1.86791 1.17830 1.82680 1.46597 1.21933 0.96339 0.97462 0.90096 0.89376 0.97609 0.95103 0.93119 0.90081 0.96163 0.90963 0.92805 0.92567 0.91955 0.91989 0.91832 0.92711 0.79648 0.94751 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 8.22 37.16 0.31 -3.94 16 2 C 0.21 5.48 2.30 -68.86 -0.16 5.32 16 3 H 0.04 1.08 7.98 -51.93 -0.41 0.67 16 4 C -0.49 -13.89 7.88 -34.44 -0.27 -14.17 16 5 H 0.06 1.77 7.14 -52.49 -0.37 1.39 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -26.04 11.32 55.43 0.63 -25.42 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 N -0.52 -11.69 4.48 -228.09 -1.02 -12.71 16 13 C 0.06 1.27 4.54 -3.83 -0.02 1.25 16 14 C -0.11 -1.87 5.94 -26.65 -0.16 -2.03 16 15 C -0.14 -2.01 4.99 -26.61 -0.13 -2.14 16 16 C 0.13 2.05 1.00 -90.54 -0.09 1.96 16 17 C -0.18 -2.16 8.83 37.16 0.33 -1.83 16 18 O -0.54 -8.78 12.31 -35.23 -0.43 -9.21 16 19 C 0.07 1.36 4.11 -3.84 -0.02 1.35 16 20 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 21 H 0.00 0.11 6.82 -51.93 -0.35 -0.24 16 22 H 0.03 0.73 6.46 -51.93 -0.34 0.40 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.08 1.79 6.72 -51.93 -0.35 1.44 16 25 H 0.02 0.41 6.58 -51.93 -0.34 0.07 16 26 H 0.07 1.25 7.80 -51.93 -0.40 0.85 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.36 4.15 9.05 45.56 0.41 4.56 16 34 H 0.03 0.65 6.88 -51.93 -0.36 0.30 16 35 H 0.07 1.43 8.01 -51.93 -0.42 1.01 16 LS Contribution 268.74 15.07 4.05 4.05 Total: -1.00 -30.22 268.74 -7.03 -37.25 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -4.92 Total: 2.00 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -0.31 Total: -12.76 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.39 Total: -38.13 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.43 Total: -9.21 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.22 -7.03 -37.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252727816.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.170 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds