Wall clock time and date at job start Mon Mar 30 2020 20:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47435 * 2 1 4 4 C 1.50702 * 109.46975 * 240.00296 * 2 1 3 5 5 H 1.08006 * 119.99590 * 239.99643 * 4 2 1 6 6 C 1.37873 * 120.00441 * 59.99526 * 4 2 1 7 7 N 1.31516 * 119.99650 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00323 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46859 * 59.99871 * 8 6 4 10 10 H 1.48502 * 109.47164 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47013 * 300.00102 * 8 6 4 12 12 N 1.46898 * 109.47448 * 120.00087 * 2 1 3 13 13 C 1.46854 * 110.99958 * 175.78853 * 12 2 1 14 14 C 1.53039 * 109.52227 * 185.83752 * 13 12 2 15 15 C 1.53126 * 109.28009 * 300.82107 * 14 13 12 16 16 C 1.53099 * 109.15071 * 57.65227 * 15 14 13 17 17 C 1.53008 * 109.48809 * 182.39661 * 16 15 14 18 18 O 1.42902 * 109.50413 * 62.29195 * 16 15 14 19 19 C 1.46847 * 110.99897 * 299.99714 * 12 2 1 20 20 H 1.09007 * 109.46915 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47113 * 299.99544 * 1 2 3 22 22 H 1.08992 * 109.47661 * 59.99848 * 1 2 3 23 23 H 0.97003 * 119.99736 * 179.97438 * 7 6 4 24 24 H 1.08993 * 109.46229 * 305.85774 * 13 12 2 25 25 H 1.09008 * 109.45803 * 65.83386 * 13 12 2 26 26 H 1.08994 * 109.50227 * 60.75933 * 14 13 12 27 27 H 1.08998 * 109.50241 * 180.83988 * 14 13 12 28 28 H 1.08990 * 109.52264 * 177.55890 * 15 14 13 29 29 H 1.09002 * 109.52383 * 297.68676 * 15 14 13 30 30 H 1.08995 * 109.46994 * 179.81056 * 17 16 15 31 31 H 1.08995 * 109.46862 * 299.81170 * 17 16 15 32 32 H 1.08999 * 109.46201 * 59.81002 * 17 16 15 33 33 H 0.96702 * 113.99966 * 60.17894 * 18 16 15 34 34 H 1.09002 * 109.46481 * 294.17890 * 19 12 2 35 35 H 1.08994 * 109.46283 * 54.15743 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2394 -2.4828 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8257 -2.5202 -4.0077 10 1 1.8267 -0.4199 -5.2205 11 1 3.8062 -1.1209 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 3.4842 -0.7998 1.1840 14 6 3.9472 -1.6500 2.3693 15 6 3.4782 -0.9979 3.6729 16 6 1.9543 -0.8538 3.6426 17 6 1.4829 -0.1486 4.9161 18 8 1.3541 -2.1482 3.5631 19 6 1.5489 -0.0266 2.4206 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 0.7093 1.1618 -3.4844 24 1 3.8042 -1.2689 0.2536 25 1 3.9221 0.1957 1.2582 26 1 3.5207 -2.6498 2.2886 27 1 5.0351 -1.7171 2.3660 28 1 3.7684 -1.6227 4.5176 29 1 3.9363 -0.0139 3.7734 30 1 0.3983 -0.0432 4.8926 31 1 1.7719 -0.7383 5.7860 32 1 1.9427 0.8377 4.9765 33 1 1.5686 -2.7276 4.3070 34 1 1.9959 0.9652 2.4888 35 1 0.4633 0.0657 2.3885 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252727817.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:27 Heat of formation + Delta-G solvation = -53.497541 kcal Electronic energy + Delta-G solvation = -15338.555316 eV Core-core repulsion = 12950.203901 eV Total energy + Delta-G solvation = -2388.351415 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.12375 -35.94961 -33.44502 -31.74210 -31.06450 -28.39363 -26.63595 -24.84277 -23.56387 -21.18672 -19.81469 -19.12933 -16.24042 -15.96764 -15.53774 -14.56147 -14.31125 -13.95297 -13.60341 -13.07352 -12.79653 -12.51625 -12.24322 -11.71968 -11.61913 -11.56169 -11.19468 -10.90215 -10.64412 -10.58046 -10.42282 -10.21031 -10.00852 -9.83864 -9.47221 -9.32340 -8.74871 -8.35498 -6.99633 -5.95380 -3.99368 3.35834 3.39767 3.43225 4.44927 4.55812 4.93415 5.03245 5.19705 5.34282 5.40549 5.49250 5.73634 5.76737 5.96234 6.04313 6.15379 6.22307 6.26061 6.30753 6.39712 6.55261 6.84188 6.85472 6.96306 7.15997 7.25886 7.61024 7.83186 7.89290 8.10243 8.32944 8.42120 8.71222 9.07334 9.65165 11.11513 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046707 B = 0.008916 C = 0.008110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.335555 B = 3139.551473 C = 3451.814825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.212 3.788 3 H -0.005 1.005 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.521 5.521 13 C 0.063 3.937 14 C -0.114 4.114 15 C -0.142 4.142 16 C 0.133 3.867 17 C -0.177 4.177 18 O -0.536 6.536 19 C 0.067 3.933 20 H 0.035 0.965 21 H 0.007 0.993 22 H 0.083 0.917 23 H 0.260 0.740 24 H 0.086 0.914 25 H 0.014 0.986 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.359 0.641 34 H 0.029 0.971 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.358 -2.137 12.140 12.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.106 3.894 3 H 0.012 0.988 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.246 5.246 13 C -0.065 4.065 14 C -0.151 4.151 15 C -0.180 4.180 16 C 0.091 3.909 17 C -0.235 4.235 18 O -0.339 6.339 19 C -0.061 4.061 20 H 0.054 0.946 21 H 0.025 0.975 22 H 0.102 0.898 23 H 0.070 0.930 24 H 0.104 0.896 25 H 0.032 0.968 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.203 0.797 34 H 0.047 0.953 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.838 -2.227 11.403 11.960 hybrid contribution 0.886 0.285 -0.247 0.962 sum 3.724 -1.942 11.156 11.920 Atomic orbital electron populations 1.21822 0.97701 0.99737 0.99626 1.19228 0.92386 0.91745 0.86013 0.98758 1.21130 1.30881 1.12158 0.89779 0.91908 1.24936 0.95278 0.95111 0.98983 1.69892 1.37038 1.23079 1.23406 0.86588 0.79010 0.79815 0.82142 1.20215 1.21398 1.20405 1.61944 1.08501 1.52490 1.01640 1.21960 0.89186 0.97044 0.98331 1.21558 0.98753 1.00685 0.94152 1.22247 0.96407 1.00942 0.98431 1.21267 0.91090 0.84099 0.94398 1.22475 1.02276 1.01101 0.97608 1.86789 1.73973 1.24484 1.48617 1.22009 1.01190 0.93179 0.89752 0.94571 0.97457 0.89792 0.93009 0.89558 0.96803 0.90949 0.92773 0.92572 0.91958 0.91842 0.92705 0.91990 0.79664 0.95282 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.75 37.15 0.33 -3.04 16 2 C 0.21 5.59 2.06 -68.87 -0.14 5.44 16 3 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 4 C -0.50 -14.10 7.86 -34.44 -0.27 -14.37 16 5 H 0.06 1.76 6.40 -52.48 -0.34 1.43 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -26.04 11.32 55.43 0.63 -25.41 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.52 -11.85 4.40 -228.08 -1.00 -12.86 16 13 C 0.06 1.30 5.21 -3.83 -0.02 1.28 16 14 C -0.11 -1.87 5.94 -26.65 -0.16 -2.03 16 15 C -0.14 -2.03 4.99 -26.62 -0.13 -2.16 16 16 C 0.13 2.07 1.00 -90.55 -0.09 1.97 16 17 C -0.18 -2.18 8.82 37.16 0.33 -1.85 16 18 O -0.54 -8.78 12.31 -35.23 -0.43 -9.21 16 19 C 0.07 1.32 4.19 -3.84 -0.02 1.30 16 20 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.01 0.15 6.28 -51.93 -0.33 -0.17 16 22 H 0.08 2.32 6.07 -51.93 -0.32 2.01 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.09 1.93 6.02 -51.93 -0.31 1.61 16 25 H 0.01 0.29 8.14 -51.92 -0.42 -0.14 16 26 H 0.07 1.26 7.80 -51.93 -0.40 0.85 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.36 4.15 9.05 45.56 0.41 4.57 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.60 6.01 -51.93 -0.31 1.29 16 LS Contribution 270.36 15.07 4.07 4.07 Total: -1.00 -30.40 270.36 -6.99 -37.39 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.96 Total: 1.21 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -0.27 Total: -11.91 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: -0.38 Total: -38.27 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.43 Total: -9.21 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.40 -6.99 -37.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252727817.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.112 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds