Wall clock time and date at job start Mon Mar 30 2020 20:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47435 * 2 1 4 4 C 1.50702 * 109.46975 * 240.00296 * 2 1 3 5 5 H 1.08006 * 119.99590 * 239.99643 * 4 2 1 6 6 C 1.37873 * 120.00441 * 59.99526 * 4 2 1 7 7 N 1.31516 * 119.99650 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00323 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46859 * 59.99871 * 8 6 4 10 10 H 1.48502 * 109.47164 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47013 * 300.00102 * 8 6 4 12 12 N 1.46898 * 109.47448 * 120.00087 * 2 1 3 13 13 C 1.46854 * 110.99958 * 175.78853 * 12 2 1 14 14 C 1.53039 * 109.52227 * 185.83752 * 13 12 2 15 15 C 1.53126 * 109.28009 * 300.82107 * 14 13 12 16 16 C 1.53099 * 109.15071 * 57.65227 * 15 14 13 17 17 C 1.53008 * 109.48809 * 182.39661 * 16 15 14 18 18 O 1.42902 * 109.50413 * 62.29195 * 16 15 14 19 19 C 1.46847 * 110.99897 * 299.99714 * 12 2 1 20 20 H 1.09007 * 109.46915 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47113 * 299.99544 * 1 2 3 22 22 H 1.08992 * 109.47661 * 59.99848 * 1 2 3 23 23 H 0.97003 * 119.99736 * 179.97438 * 7 6 4 24 24 H 1.08993 * 109.46229 * 305.85774 * 13 12 2 25 25 H 1.09008 * 109.45803 * 65.83386 * 13 12 2 26 26 H 1.08994 * 109.50227 * 60.75933 * 14 13 12 27 27 H 1.08998 * 109.50241 * 180.83988 * 14 13 12 28 28 H 1.08990 * 109.52264 * 177.55890 * 15 14 13 29 29 H 1.09002 * 109.52383 * 297.68676 * 15 14 13 30 30 H 1.08995 * 109.46994 * 179.81056 * 17 16 15 31 31 H 1.08995 * 109.46862 * 299.81170 * 17 16 15 32 32 H 1.08999 * 109.46201 * 59.81002 * 17 16 15 33 33 H 0.96702 * 113.99966 * 60.17894 * 18 16 15 34 34 H 1.09002 * 109.46481 * 294.17890 * 19 12 2 35 35 H 1.08994 * 109.46283 * 54.15743 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2394 -2.4828 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8257 -2.5202 -4.0077 10 1 1.8267 -0.4199 -5.2205 11 1 3.8062 -1.1209 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 3.4842 -0.7998 1.1840 14 6 3.9472 -1.6500 2.3693 15 6 3.4782 -0.9979 3.6729 16 6 1.9543 -0.8538 3.6426 17 6 1.4829 -0.1486 4.9161 18 8 1.3541 -2.1482 3.5631 19 6 1.5489 -0.0266 2.4206 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 0.7093 1.1618 -3.4844 24 1 3.8042 -1.2689 0.2536 25 1 3.9221 0.1957 1.2582 26 1 3.5207 -2.6498 2.2886 27 1 5.0351 -1.7171 2.3660 28 1 3.7684 -1.6227 4.5176 29 1 3.9363 -0.0139 3.7734 30 1 0.3983 -0.0432 4.8926 31 1 1.7719 -0.7383 5.7860 32 1 1.9427 0.8377 4.9765 33 1 1.5686 -2.7276 4.3070 34 1 1.9959 0.9652 2.4888 35 1 0.4633 0.0657 2.3885 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252727817.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:26 Heat of formation + Delta-G solvation = -76.119643 kcal Electronic energy + Delta-G solvation = -15339.536284 eV Core-core repulsion = 12950.203901 eV Total energy + Delta-G solvation = -2389.332383 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.54129 -37.56280 -35.20268 -33.52221 -32.33815 -30.28185 -28.15643 -26.69610 -25.18240 -22.60426 -21.64208 -20.61954 -18.34880 -17.39021 -17.08882 -16.18531 -15.93598 -15.43269 -15.09329 -14.72281 -14.38153 -14.16545 -13.53700 -13.46651 -12.98210 -12.90287 -12.79072 -12.67983 -12.47225 -12.27369 -12.11499 -12.09920 -11.70923 -11.61503 -10.99505 -10.83129 -10.59003 -10.43569 -8.83350 -8.11991 -6.23971 1.40667 1.43449 1.50974 2.41552 3.14802 3.28290 3.48697 3.88610 3.95833 4.11160 4.28453 4.45662 4.60614 4.69926 4.76281 4.77058 4.81543 4.91495 4.97689 5.01813 5.04710 5.12427 5.23650 5.29206 5.37962 5.46676 5.53846 5.71661 5.79381 6.25253 6.45738 6.78601 6.91590 7.15825 7.44981 8.94203 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046707 B = 0.008916 C = 0.008110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.335555 B = 3139.551473 C = 3451.814825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.215 3.785 3 H -0.042 1.042 4 C -0.519 4.519 5 H 0.058 0.942 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.270 1.270 12 N -0.530 5.530 13 C 0.061 3.939 14 C -0.106 4.106 15 C -0.137 4.137 16 C 0.135 3.865 17 C -0.168 4.168 18 O -0.561 6.561 19 C 0.061 3.939 20 H 0.026 0.974 21 H 0.026 0.974 22 H 0.061 0.939 23 H 0.262 0.738 24 H 0.060 0.940 25 H 0.007 0.993 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.381 0.619 34 H 0.028 0.972 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.362 -3.106 13.737 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.108 3.892 3 H -0.024 1.024 4 C -0.557 4.557 5 H 0.076 0.924 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.195 1.195 12 N -0.255 5.255 13 C -0.068 4.068 14 C -0.143 4.143 15 C -0.175 4.175 16 C 0.094 3.906 17 C -0.226 4.226 18 O -0.368 6.368 19 C -0.068 4.068 20 H 0.045 0.955 21 H 0.045 0.955 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.025 0.975 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.229 0.771 34 H 0.046 0.954 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.851 -3.209 13.035 13.965 hybrid contribution 0.560 0.600 -0.718 1.090 sum 4.411 -2.609 12.317 13.340 Atomic orbital electron populations 1.21625 0.97528 0.98908 0.99462 1.19044 0.92537 0.89964 0.87672 1.02425 1.21385 1.31146 1.12217 0.90982 0.92426 1.25760 0.95372 0.95812 1.01998 1.70021 1.37784 1.24219 1.24138 0.85548 0.78754 0.78626 0.78329 1.19774 1.20723 1.19532 1.61911 1.09877 1.52180 1.01524 1.22003 0.87949 0.97324 0.99476 1.21493 1.00195 0.99252 0.93388 1.22231 0.95105 1.01879 0.98237 1.21197 0.92090 0.83742 0.93550 1.22388 1.01892 1.01611 0.96730 1.86723 1.74436 1.25175 1.50450 1.22142 1.00175 0.94123 0.90326 0.95477 0.95480 0.92046 0.92888 0.92175 0.97528 0.91813 0.90273 0.88803 0.91267 0.92480 0.89648 0.91249 0.77055 0.95429 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.21 8.75 71.98 0.63 -5.58 16 2 C 0.21 11.72 2.06 44.17 0.09 11.82 16 3 H -0.04 -2.51 8.14 -2.38 -0.02 -2.53 16 4 C -0.52 -30.03 7.86 25.60 0.20 -29.83 16 5 H 0.06 3.32 6.40 -2.91 -0.02 3.30 16 6 C 0.01 0.51 5.30 84.65 0.45 0.96 16 7 N -0.92 -54.91 11.32 21.45 0.24 -54.67 16 8 Si 0.96 45.05 29.54 68.60 2.03 47.07 16 9 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 12 N -0.53 -24.51 4.40 -875.51 -3.85 -28.36 16 13 C 0.06 2.52 5.21 86.32 0.45 2.97 16 14 C -0.11 -3.24 5.94 30.65 0.18 -3.06 16 15 C -0.14 -3.41 4.99 30.67 0.15 -3.26 16 16 C 0.14 3.88 1.00 -10.75 -0.01 3.86 16 17 C -0.17 -3.57 8.82 71.98 0.64 -2.94 16 18 O -0.56 -17.06 12.31 -148.98 -1.83 -18.89 16 19 C 0.06 2.36 4.19 86.32 0.36 2.72 16 20 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 21 H 0.03 1.27 6.28 -2.38 -0.01 1.25 16 22 H 0.06 3.51 6.07 -2.39 -0.01 3.50 16 23 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 24 H 0.06 2.76 6.02 -2.39 -0.01 2.74 16 25 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 26 H 0.06 2.08 7.80 -2.39 -0.02 2.06 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.38 7.50 9.05 -74.06 -0.67 6.83 16 34 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 2.58 6.01 -2.39 -0.01 2.57 16 Total: -1.00 -66.99 270.36 0.11 -66.88 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.39 Total: 10.30 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 3.14 Total: -22.34 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -3.61 Total: -83.02 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.83 Total: -18.89 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -66.99 0.11 -66.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252727817.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.239 kcal (2) G-P(sol) polarization free energy of solvation -66.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds