Wall clock time and date at job start Mon Mar 30 2020 20:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 N 1.46893 * 109.47225 * 120.00695 * 2 1 3 13 13 C 1.46860 * 111.00023 * 59.20575 * 12 2 1 14 14 C 1.53035 * 109.52434 * 174.16153 * 13 12 2 15 15 C 1.53124 * 109.27958 * 59.17752 * 14 13 12 16 16 H 1.09000 * 109.56906 * 62.28069 * 15 14 13 17 17 O 1.42897 * 109.52372 * 182.43869 * 15 14 13 18 18 C 1.53123 * 109.16211 * 302.34992 * 15 14 13 19 19 H 1.09003 * 109.49807 * 297.71152 * 18 15 14 20 20 C 1.52999 * 109.53336 * 177.61350 * 18 15 14 21 21 C 1.46852 * 111.00236 * 294.99768 * 12 2 1 22 22 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 23 23 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 25 25 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 26 26 H 1.08994 * 109.45715 * 294.17948 * 13 12 2 27 27 H 1.09002 * 109.45894 * 54.14463 * 13 12 2 28 28 H 1.08999 * 109.50280 * 299.24285 * 14 13 12 29 29 H 1.08989 * 109.50286 * 179.12208 * 14 13 12 30 30 H 0.96694 * 114.00293 * 299.68872 * 17 15 14 31 31 H 1.09004 * 109.47141 * 300.17244 * 20 18 15 32 32 H 1.09001 * 109.47190 * 60.17681 * 20 18 15 33 33 H 1.09004 * 109.46406 * 180.17419 * 20 18 15 34 34 H 1.08996 * 109.46107 * 305.85731 * 21 12 2 35 35 H 1.09002 * 109.45694 * 65.83186 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 7 2.0197 -0.6926 1.1993 13 6 1.5334 -2.0777 1.2426 14 6 2.1776 -2.8093 2.4223 15 6 1.8223 -2.0829 3.7226 16 1 0.7425 -2.1051 3.8699 17 8 2.4676 -2.7286 4.8220 18 6 2.2966 -0.6298 3.6324 19 1 3.3811 -0.6070 3.5252 20 6 1.8930 0.1199 4.9036 21 6 1.6489 0.0386 2.4176 22 1 -0.3634 0.5140 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.9030 -0.5275 -4.4376 26 1 0.4500 -2.0785 1.3625 27 1 1.7963 -2.5840 0.3138 28 1 3.2602 -2.8207 2.2961 29 1 1.8046 -3.8325 2.4634 30 1 2.2135 -3.6542 4.9388 31 1 0.8086 0.0956 5.0110 32 1 2.3546 -0.3566 5.7685 33 1 2.2285 1.1549 4.8369 34 1 1.9957 1.0692 2.3423 35 1 0.5650 0.0276 2.5320 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253196866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:42 Heat of formation + Delta-G solvation = -74.647291 kcal Electronic energy + Delta-G solvation = -15244.736141 eV Core-core repulsion = 12855.467604 eV Total energy + Delta-G solvation = -2389.268537 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.59681 -37.87851 -35.36535 -33.97065 -32.80706 -30.41090 -27.54382 -26.91922 -24.80039 -23.33972 -21.50564 -20.46780 -18.59631 -18.21854 -17.08660 -16.33743 -15.97864 -15.71930 -15.25409 -14.92570 -14.29950 -14.23649 -13.93764 -13.74760 -13.58739 -13.03103 -12.83312 -12.72174 -12.62370 -12.28449 -11.99077 -11.88441 -11.56910 -11.37934 -11.16008 -11.00119 -10.78428 -10.62886 -8.93135 -8.27910 -6.30637 1.29058 1.35482 1.45395 2.31741 3.05606 3.17644 3.36572 3.78917 3.90174 4.14316 4.24074 4.38067 4.44884 4.48631 4.55781 4.61844 4.69692 4.75150 4.78494 4.90777 4.96378 4.99656 5.14063 5.23274 5.24633 5.37902 5.43510 5.47872 5.63281 6.05866 6.43117 6.72016 6.76359 6.93790 7.34120 8.88830 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049934 B = 0.008782 C = 0.007947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.609004 B = 3187.436539 C = 3522.468860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.183 3.817 3 H 0.034 0.966 4 C -0.503 4.503 5 H 0.039 0.961 6 C 0.011 3.989 7 N -0.949 5.949 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.299 1.299 11 H -0.249 1.249 12 N -0.541 5.541 13 C 0.066 3.934 14 C -0.141 4.141 15 C 0.118 3.882 16 H 0.062 0.938 17 O -0.575 6.575 18 C -0.080 4.080 19 H 0.063 0.937 20 C -0.133 4.133 21 C 0.059 3.941 22 H 0.036 0.964 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.265 0.735 26 H 0.033 0.967 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.392 0.608 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.711 0.019 15.842 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.075 3.925 3 H 0.051 0.949 4 C -0.542 4.542 5 H 0.057 0.943 6 C -0.186 4.186 7 N -0.590 5.590 8 Si 0.777 3.223 9 H -0.194 1.194 10 H -0.227 1.227 11 H -0.173 1.173 12 N -0.265 5.265 13 C -0.062 4.062 14 C -0.179 4.179 15 C 0.059 3.941 16 H 0.080 0.920 17 O -0.383 6.383 18 C -0.099 4.099 19 H 0.082 0.918 20 C -0.190 4.190 21 C -0.069 4.069 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.242 0.758 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.915 0.585 15.710 16.201 hybrid contribution -1.284 -0.138 -1.052 1.665 sum -5.199 0.447 14.658 15.559 Atomic orbital electron populations 1.22681 0.99826 1.01274 1.00049 1.19559 0.90044 0.94462 0.88436 0.94861 1.21195 1.30419 1.12515 0.90034 0.94295 1.25774 0.97510 0.99949 0.95371 1.70036 1.47901 1.42548 0.98534 0.85840 0.78966 0.80137 0.77310 1.19442 1.22672 1.17260 1.61969 1.60283 1.02349 1.01859 1.21862 0.96494 0.89541 0.98281 1.22296 1.01386 0.99561 0.94672 1.21753 0.95443 0.92178 0.84687 0.92044 1.86453 1.71086 1.30419 1.50368 1.21109 1.00605 0.93412 0.94790 0.91811 1.21661 1.01538 0.99851 0.95992 1.22170 0.97889 0.97815 0.89043 0.94531 0.92822 0.91949 0.92589 0.94893 0.92715 0.92373 0.89590 0.75849 0.92141 0.91886 0.92011 0.90811 0.94268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.37 7.98 71.98 0.57 -6.79 16 2 C 0.18 8.52 1.94 44.17 0.09 8.60 16 3 H 0.03 1.60 7.14 -2.39 -0.02 1.58 16 4 C -0.50 -28.69 8.44 25.60 0.22 -28.47 16 5 H 0.04 2.49 7.00 -2.92 -0.02 2.47 16 6 C 0.01 0.63 5.45 84.65 0.46 1.09 16 7 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 8 Si 0.95 44.83 24.37 68.60 1.67 46.50 16 9 H -0.27 -12.03 6.87 99.48 0.68 -11.34 16 10 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 11 H -0.25 -10.85 6.53 99.48 0.65 -10.20 16 12 N -0.54 -22.00 4.63 -875.49 -4.06 -26.06 16 13 C 0.07 2.49 4.66 86.32 0.40 2.89 16 14 C -0.14 -4.17 5.72 30.65 0.18 -3.99 16 15 C 0.12 3.04 2.95 30.68 0.09 3.13 16 16 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 17 O -0.58 -13.31 12.77 -148.98 -1.90 -15.21 16 18 C -0.08 -2.25 2.61 -10.74 -0.03 -2.28 16 19 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 20 C -0.13 -2.96 9.07 71.98 0.65 -2.31 16 21 C 0.06 1.89 4.31 86.32 0.37 2.26 16 22 H 0.04 1.55 3.27 -2.39 -0.01 1.54 16 23 H 0.05 2.18 6.52 -2.39 -0.02 2.17 16 24 H 0.06 2.14 6.65 -2.39 -0.02 2.12 16 25 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 26 H 0.03 1.16 6.62 -2.39 -0.02 1.15 16 27 H 0.05 2.45 6.35 -2.39 -0.02 2.44 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16 30 H 0.39 5.56 9.09 -74.06 -0.67 4.89 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.40 7.76 -2.39 -0.02 1.38 16 33 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.07 2.34 8.08 -2.39 -0.02 2.32 16 35 H 0.04 1.18 6.73 -2.39 -0.02 1.16 16 Total: -1.00 -66.26 261.73 -0.67 -66.93 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.32 Total: 12.93 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 3.00 Total: -25.86 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -3.76 Total: -85.29 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -1.90 Total: -15.21 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.67 Total: 46.50 kcal Total: -66.26 -0.67 -66.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253196866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.715 kcal (2) G-P(sol) polarization free energy of solvation -66.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds