Wall clock time and date at job start Mon Mar 30 2020 20:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47140 * 2 1 4 4 C 1.52998 * 109.47053 * 240.00099 * 2 1 3 5 5 H 1.08997 * 109.47357 * 185.00230 * 4 2 1 6 6 C 1.53000 * 109.47250 * 305.00483 * 4 2 1 7 7 C 1.50700 * 109.47301 * 64.99971 * 4 2 1 8 8 H 1.08005 * 119.99605 * 359.97438 * 7 4 2 9 9 C 1.37876 * 120.00530 * 180.02562 * 7 4 2 10 10 N 1.31512 * 120.00433 * 180.02562 * 9 7 4 11 11 Si 1.86801 * 119.99596 * 359.97438 * 9 7 4 12 12 H 1.48505 * 109.46693 * 90.00594 * 11 9 7 13 13 H 1.48499 * 109.47194 * 210.00314 * 11 9 7 14 14 H 1.48500 * 109.47414 * 330.00671 * 11 9 7 15 15 N 1.46897 * 109.46897 * 120.00490 * 2 1 3 16 16 C 1.47016 * 110.99663 * 294.99435 * 15 2 1 17 17 C 1.53096 * 109.25743 * 177.60972 * 16 15 2 18 18 O 1.43023 * 109.25861 * 56.85106 * 17 16 15 19 19 C 1.43018 * 113.73594 * 301.32799 * 18 17 16 20 20 C 1.47014 * 110.99985 * 171.36452 * 15 2 1 21 21 H 1.08995 * 109.46722 * 300.00045 * 1 2 3 22 22 H 1.09005 * 109.46932 * 59.99849 * 1 2 3 23 23 H 1.08998 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47612 * 59.99867 * 6 4 2 25 25 H 1.09001 * 109.47231 * 180.02562 * 6 4 2 26 26 H 1.09007 * 109.46833 * 299.99697 * 6 4 2 27 27 H 0.97000 * 120.00329 * 179.97438 * 10 9 7 28 28 H 1.09001 * 109.50444 * 57.67894 * 16 15 2 29 29 H 1.08996 * 109.54324 * 297.56799 * 16 15 2 30 30 H 1.08999 * 109.51205 * 176.78862 * 17 16 15 31 31 H 1.09004 * 109.50767 * 296.91617 * 17 16 15 32 32 H 1.08997 * 109.51111 * 298.73945 * 19 18 17 33 33 H 1.08994 * 109.54192 * 178.62291 * 19 18 17 34 34 H 1.08995 * 109.50517 * 302.32655 * 20 15 2 35 35 H 1.09004 * 109.50827 * 62.45421 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 3.1263 -0.7995 -1.2056 6 6 1.4299 -2.1228 -1.3138 7 6 1.6414 0.0571 -2.4766 8 1 1.0800 0.9742 -2.3756 9 6 1.9923 -0.4021 -3.7284 10 7 1.6448 0.2773 -4.7994 11 14 2.9627 -1.9888 -3.9029 12 1 2.0234 -3.1331 -4.0191 13 1 3.8108 -1.9190 -5.1199 14 1 3.8251 -2.1756 -2.7085 15 7 2.0197 -0.6926 1.1994 16 6 1.6485 0.0397 2.4189 17 6 2.1249 -0.7453 3.6440 18 8 3.5360 -0.9579 3.5484 19 6 3.9328 -1.6689 2.3727 20 6 3.4746 -0.8933 1.1348 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.3436 -2.0446 -1.3575 25 1 1.7936 -2.6368 -2.2036 26 1 1.7183 -2.6858 -0.4260 27 1 1.8921 -0.0456 -5.6800 28 1 0.5653 0.1545 2.4590 29 1 2.1187 1.0229 2.4112 30 1 1.9026 -0.1790 4.5483 31 1 1.6136 -1.7073 3.6813 32 1 3.4741 -2.6577 2.3730 33 1 5.0179 -1.7711 2.3571 34 1 3.7245 -1.4593 0.2375 35 1 3.9747 0.0748 1.1062 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259648756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:49 Heat of formation + Delta-G solvation = -37.011387 kcal Electronic energy + Delta-G solvation = -15358.782512 eV Core-core repulsion = 12971.145991 eV Total energy + Delta-G solvation = -2387.636522 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.47897 -36.82425 -33.59764 -31.51412 -31.11550 -28.78251 -26.23523 -25.11570 -23.87207 -22.31933 -20.40728 -18.51042 -16.86962 -15.95956 -15.89433 -15.20279 -14.88142 -14.57443 -13.93853 -13.68944 -13.54149 -12.80700 -12.27202 -12.02871 -11.78636 -11.47004 -11.28408 -11.15800 -11.06411 -10.78129 -10.52116 -10.19085 -9.83968 -9.63221 -9.50807 -9.11668 -8.91982 -8.53304 -7.86801 -6.06553 -4.05140 3.29119 3.38252 3.41012 3.96221 4.26070 4.42159 5.10617 5.24583 5.27302 5.28593 5.36913 5.48788 5.70320 5.75721 5.87012 5.93537 6.01062 6.16746 6.19823 6.21888 6.44135 6.53257 6.60927 6.86304 6.86829 7.04680 7.09525 7.24025 7.42241 7.54168 7.61998 7.85097 8.52520 8.96135 9.56213 11.06557 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043934 B = 0.009533 C = 0.008501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.171966 B = 2936.351038 C = 3293.058766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.099 3.901 3 H 0.034 0.966 4 C 0.014 3.986 5 H 0.027 0.973 6 C -0.141 4.141 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.069 3.931 10 N -0.903 5.903 11 Si 0.893 3.107 12 H -0.280 1.280 13 H -0.300 1.300 14 H -0.269 1.269 15 N -0.532 5.532 16 C 0.015 3.985 17 C 0.066 3.934 18 O -0.392 6.392 19 C 0.065 3.935 20 C 0.013 3.987 21 H 0.032 0.968 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.029 0.971 26 H 0.037 0.963 27 H 0.263 0.737 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.290 -3.485 13.478 13.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.008 4.008 3 H 0.052 0.948 4 C -0.005 4.005 5 H 0.045 0.955 6 C -0.198 4.198 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.132 4.132 10 N -0.541 5.541 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.228 1.228 14 H -0.194 1.194 15 N -0.258 5.258 16 C -0.114 4.114 17 C -0.011 4.011 18 O -0.311 6.311 19 C -0.012 4.012 20 C -0.115 4.115 21 H 0.051 0.949 22 H 0.090 0.910 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.198 -3.865 13.438 14.034 hybrid contribution 0.645 -0.092 -0.606 0.890 sum 1.843 -3.958 12.832 13.554 Atomic orbital electron populations 1.21813 0.94791 1.01902 1.00520 1.21612 0.95426 0.95101 0.88658 0.94801 1.19259 0.95718 0.92778 0.92757 0.95489 1.22099 1.01171 0.98331 0.98156 1.21007 1.35843 1.09230 0.88809 0.90825 1.24991 0.95428 0.96965 0.95855 1.69897 1.46875 1.39298 0.98048 0.86772 0.80094 0.84051 0.76683 1.20742 1.22842 1.19398 1.62327 1.11799 1.49310 1.02392 1.22777 1.01568 0.95786 0.91242 1.22635 0.81647 0.99551 0.97307 1.87923 1.23148 1.77254 1.42738 1.22691 0.99683 0.94787 0.84067 1.22837 0.89064 1.00186 0.99414 0.94873 0.91040 0.92207 0.92872 0.95207 0.94433 0.92729 0.89685 0.94578 0.89127 0.92597 0.92559 0.88958 0.88619 0.94351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.42 37.16 0.31 -2.14 16 2 C 0.10 1.97 1.80 -67.71 -0.12 1.84 16 3 H 0.03 0.72 8.13 -51.93 -0.42 0.30 16 4 C 0.01 0.32 1.22 -91.77 -0.11 0.21 16 5 H 0.03 0.64 5.02 -51.93 -0.26 0.38 16 6 C -0.14 -3.06 8.06 37.16 0.30 -2.76 16 7 C -0.51 -14.02 8.44 -34.44 -0.29 -14.31 16 8 H 0.07 2.18 7.30 -52.48 -0.38 1.80 16 9 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 10 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 11 Si 0.89 22.18 24.37 -169.99 -4.14 18.04 16 12 H -0.28 -6.84 6.87 56.52 0.39 -6.46 16 13 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 14 H -0.27 -6.36 6.53 56.52 0.37 -6.00 16 15 N -0.53 -9.16 4.05 -226.33 -0.92 -10.08 16 16 C 0.01 0.22 5.42 -3.71 -0.02 0.20 16 17 C 0.07 0.85 7.01 37.21 0.26 1.11 16 18 O -0.39 -5.80 10.83 -35.23 -0.38 -6.19 16 19 C 0.06 0.91 7.01 37.21 0.26 1.17 16 20 C 0.01 0.22 5.12 -3.71 -0.02 0.20 16 21 H 0.03 0.52 6.47 -51.93 -0.34 0.18 16 22 H 0.07 1.45 6.95 -51.93 -0.36 1.09 16 23 H 0.06 1.09 6.34 -51.93 -0.33 0.76 16 24 H 0.05 1.14 6.34 -51.93 -0.33 0.81 16 25 H 0.03 0.68 3.27 -51.93 -0.17 0.51 16 26 H 0.04 0.74 7.75 -51.93 -0.40 0.33 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.08 1.15 6.33 -51.93 -0.33 0.82 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.10 1.70 5.93 -51.93 -0.31 1.39 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 258.65 15.07 3.90 3.90 Total: -1.00 -29.83 258.65 -5.64 -35.47 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -5.35 Total: -1.78 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 0.47 Total: -12.62 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.14 Total: -36.83 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.38 Total: -6.19 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.04 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.83 -5.64 -35.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259648756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.538 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds