Wall clock time and date at job start Mon Mar 30 2020 20:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46363 * 2 1 4 4 C 1.53030 * 109.46524 * 240.02819 * 2 1 3 5 5 C 1.53113 * 109.27798 * 299.16366 * 4 2 1 6 6 H 1.09002 * 109.52259 * 182.43739 * 5 4 2 7 7 O 1.42902 * 109.52333 * 62.24846 * 5 4 2 8 8 C 1.53117 * 109.16106 * 302.34428 * 5 4 2 9 9 H 1.08998 * 109.53665 * 297.69024 * 8 5 4 10 10 C 1.50701 * 109.50325 * 177.59575 * 8 5 4 11 11 H 1.08004 * 119.99871 * 240.19561 * 10 8 5 12 12 C 1.37877 * 120.00300 * 60.19850 * 10 8 5 13 13 N 1.31511 * 120.00161 * 179.97438 * 12 10 8 14 14 Si 1.86798 * 119.99894 * 359.97438 * 12 10 8 15 15 H 1.48502 * 109.47226 * 270.00218 * 14 12 10 16 16 H 1.48500 * 109.47381 * 149.99978 * 14 12 10 17 17 H 1.48497 * 109.47173 * 29.99947 * 14 12 10 18 18 C 1.53030 * 109.27915 * 57.65421 * 8 5 4 19 19 H 1.08998 * 109.46640 * 60.83554 * 18 8 5 20 20 C 1.53003 * 109.46568 * 180.80736 * 18 8 5 21 21 N 1.46846 * 109.52327 * 300.82147 * 18 8 5 22 22 C 1.46902 * 111.00307 * 185.83871 * 21 18 8 23 23 H 1.09004 * 109.47281 * 309.67662 * 1 2 3 24 24 H 1.09002 * 109.47119 * 69.67410 * 1 2 3 25 25 H 1.08996 * 109.47159 * 189.67563 * 1 2 3 26 26 H 1.08999 * 109.50178 * 59.10348 * 4 2 1 27 27 H 1.09004 * 109.50688 * 179.17874 * 4 2 1 28 28 H 0.96702 * 114.00054 * 60.32294 * 7 5 4 29 29 H 0.97002 * 120.00261 * 179.97438 * 13 12 10 30 30 H 1.09001 * 109.47158 * 59.99728 * 20 18 8 31 31 H 1.08995 * 109.47359 * 179.97438 * 20 18 8 32 32 H 1.09002 * 109.46500 * 299.99861 * 20 18 8 33 33 H 1.08999 * 109.46945 * 59.99403 * 22 21 18 34 34 H 1.08993 * 109.47409 * 180.02562 * 22 21 18 35 35 H 1.09002 * 109.46751 * 300.00159 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2499 5 6 1.5443 -2.1694 -1.2356 6 1 1.9409 -2.6987 -2.1020 7 8 0.1160 -2.1860 -1.2770 8 6 2.0269 -2.8531 0.0467 9 1 3.1166 -2.8756 0.0598 10 6 1.4940 -4.2618 0.0970 11 1 0.8555 -4.5688 0.9122 12 6 1.8215 -5.1588 -0.8976 13 7 1.3569 -6.3883 -0.8534 14 14 2.9253 -4.6276 -2.3078 15 1 2.0922 -4.0877 -3.4122 16 1 3.6996 -5.7962 -2.7977 17 1 3.8616 -3.5766 -1.8348 18 6 1.5174 -2.0705 1.2590 19 1 0.4275 -2.0607 1.2532 20 6 2.0141 -2.7386 2.5427 21 7 2.0192 -0.6917 1.1994 22 6 1.6651 0.0506 2.4166 23 1 -0.3634 0.6561 0.7910 24 1 -0.3633 0.3570 -0.9637 25 1 -0.3633 -1.0130 0.1727 26 1 1.6637 -0.2163 -2.1398 27 1 3.1298 -0.7085 -1.2580 28 1 -0.2595 -1.7685 -2.0643 29 1 1.5870 -7.0192 -1.5533 30 1 3.1040 -2.7489 2.5487 31 1 1.6516 -2.1811 3.4063 32 1 1.6408 -3.7618 2.5875 33 1 2.1029 -0.4435 3.2838 34 1 2.0484 1.0685 2.3458 35 1 0.5806 0.0777 2.5229 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259775445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:58 Heat of formation + Delta-G solvation = -34.056692 kcal Electronic energy + Delta-G solvation = -15993.482303 eV Core-core repulsion = 13605.973906 eV Total energy + Delta-G solvation = -2387.508397 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.59886 -35.63059 -33.52636 -31.94019 -31.07586 -28.02271 -26.81970 -25.41801 -23.65091 -20.92621 -20.63253 -18.23392 -16.81871 -16.03832 -15.50556 -14.82480 -14.41679 -14.02814 -13.62070 -13.42430 -12.57940 -12.24617 -12.15928 -11.90334 -11.73110 -11.49927 -11.37468 -10.96748 -10.85680 -10.81500 -10.48774 -10.34091 -9.81807 -9.75849 -9.53212 -8.86771 -8.51686 -8.37876 -7.62374 -5.99424 -3.94885 3.26128 3.37289 3.39104 4.44518 4.49466 5.14904 5.26587 5.33188 5.45560 5.59854 5.69922 5.77910 5.91606 5.96387 6.05468 6.11383 6.12742 6.20241 6.32600 6.34857 6.39581 6.54300 6.67887 6.82112 6.99433 7.05896 7.16509 7.34433 7.67154 7.74651 7.94953 8.48229 8.64332 9.04454 9.62766 11.14479 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.035620 B = 0.013884 C = 0.011936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.888337 B = 2016.157606 C = 2345.331795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.093 3.907 3 H 0.065 0.935 4 C -0.149 4.149 5 C 0.099 3.901 6 H 0.035 0.965 7 O -0.535 6.535 8 C 0.033 3.967 9 H 0.045 0.955 10 C -0.489 4.489 11 H 0.076 0.924 12 C 0.071 3.929 13 N -0.903 5.903 14 Si 0.878 3.122 15 H -0.282 1.282 16 H -0.296 1.296 17 H -0.266 1.266 18 C 0.097 3.903 19 H 0.049 0.951 20 C -0.137 4.137 21 N -0.539 5.539 22 C 0.024 3.976 23 H 0.035 0.965 24 H 0.047 0.953 25 H 0.103 0.897 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.350 0.650 29 H 0.261 0.739 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 12.263 1.028 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.016 4.016 3 H 0.083 0.917 4 C -0.187 4.187 5 C 0.040 3.960 6 H 0.053 0.947 7 O -0.338 6.338 8 C 0.014 3.986 9 H 0.062 0.938 10 C -0.527 4.527 11 H 0.094 0.906 12 C -0.130 4.130 13 N -0.542 5.542 14 Si 0.709 3.291 15 H -0.210 1.210 16 H -0.224 1.224 17 H -0.191 1.191 18 C -0.010 4.010 19 H 0.067 0.933 20 C -0.194 4.194 21 N -0.264 5.264 22 C -0.125 4.125 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.121 0.879 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.194 0.806 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.063 11.747 1.510 11.892 hybrid contribution -0.345 0.646 -1.542 1.707 sum 0.718 12.393 -0.032 12.414 Atomic orbital electron populations 1.22773 0.97415 1.04805 1.00257 1.21433 0.93191 0.96362 0.90609 0.91705 1.22406 1.01640 0.98222 0.96450 1.22357 0.80962 0.92152 1.00506 0.94711 1.86722 1.19996 1.82457 1.44604 1.19230 0.96480 0.94700 0.88238 0.93754 1.20852 1.30012 0.92138 1.09699 0.90605 1.24923 0.95658 0.94863 0.97546 1.69878 1.45561 1.04452 1.34315 0.86995 0.81210 0.77570 0.83301 1.20951 1.22384 1.19115 1.21537 0.97491 0.85411 0.96538 0.93271 1.21847 1.01196 1.01129 0.95233 1.62254 1.59731 1.03155 1.01240 1.22349 0.98323 0.97929 0.93866 0.94580 0.93356 0.87873 0.92597 0.91087 0.80578 0.92866 0.92885 0.94554 0.90909 0.91338 0.92671 0.96045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 7.29 37.15 0.27 -2.81 16 2 C 0.09 1.54 2.93 -67.73 -0.20 1.34 16 3 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 4 C -0.15 -2.62 5.44 -26.66 -0.14 -2.77 16 5 C 0.10 2.12 2.72 -26.61 -0.07 2.05 16 6 H 0.04 0.81 3.37 -51.93 -0.17 0.63 16 7 O -0.54 -11.06 8.94 -35.23 -0.31 -11.37 16 8 C 0.03 0.77 1.21 -91.70 -0.11 0.66 16 9 H 0.04 1.10 7.20 -51.93 -0.37 0.73 16 10 C -0.49 -13.62 8.01 -34.44 -0.28 -13.89 16 11 H 0.08 2.30 7.02 -52.48 -0.37 1.93 16 12 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 13 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 14 Si 0.88 21.98 24.36 -169.99 -4.14 17.84 16 15 H -0.28 -6.89 6.89 56.52 0.39 -6.50 16 16 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 17 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 18 C 0.10 2.01 1.57 -67.72 -0.11 1.90 16 19 H 0.05 1.10 5.81 -51.93 -0.30 0.79 16 20 C -0.14 -2.65 8.53 37.16 0.32 -2.33 16 21 N -0.54 -9.70 4.69 -226.95 -1.07 -10.77 16 22 C 0.02 0.36 8.68 60.07 0.52 0.88 16 23 H 0.04 0.53 7.13 -51.93 -0.37 0.16 16 24 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 25 H 0.10 1.93 3.71 -51.93 -0.19 1.74 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.35 5.64 9.05 45.56 0.41 6.06 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.60 6.32 -51.93 -0.33 0.27 16 32 H 0.07 1.54 6.68 -51.93 -0.35 1.19 16 33 H 0.07 0.98 6.21 -51.93 -0.32 0.66 16 34 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16 35 H 0.02 0.32 6.89 -51.93 -0.36 -0.04 16 LS Contribution 250.69 15.07 3.78 3.78 Total: -1.00 -30.49 250.69 -5.30 -35.79 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.43 Total: 4.81 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 0.10 Total: -13.03 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.29 Total: -37.81 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.31 Total: -11.37 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.14 Total: 17.84 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.49 -5.30 -35.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259775445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.732 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds