Wall clock time and date at job start Mon Mar 30 2020 20:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46676 * 2 1 4 4 N 1.46897 * 109.47050 * 119.99589 * 2 1 3 5 5 C 1.47442 * 110.99901 * 176.93875 * 4 2 1 6 6 C 1.54323 * 107.23355 * 236.74684 * 5 4 2 7 7 O 1.42897 * 110.71108 * 96.27054 * 6 5 4 8 8 C 1.50705 * 110.70678 * 219.33463 * 6 5 4 9 9 H 1.07993 * 119.99993 * 118.54004 * 8 6 5 10 10 C 1.37873 * 119.99693 * 298.54518 * 8 6 5 11 11 N 1.31520 * 120.00306 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 119.99854 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46989 * 179.97438 * 12 10 8 14 14 H 1.48493 * 109.47410 * 300.00022 * 12 10 8 15 15 H 1.48505 * 109.47087 * 59.99995 * 12 10 8 16 16 C 1.55146 * 103.01523 * 337.71454 * 6 5 4 17 17 C 1.47844 * 110.99823 * 56.09658 * 4 2 1 18 18 H 1.09003 * 110.37360 * 27.42231 * 17 4 2 19 19 C 1.53003 * 110.37341 * 265.18877 * 17 4 2 20 20 H 1.08999 * 109.47142 * 293.78709 * 1 2 3 21 21 H 1.08996 * 109.46966 * 53.79422 * 1 2 3 22 22 H 1.09000 * 109.46471 * 173.78632 * 1 2 3 23 23 H 1.08996 * 109.47295 * 240.00224 * 2 1 3 24 24 H 1.08997 * 109.46756 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.46792 * 299.99636 * 3 2 1 26 26 H 1.08996 * 109.47076 * 60.00089 * 3 2 1 27 27 H 1.09000 * 109.89243 * 117.33867 * 5 4 2 28 28 H 1.08996 * 109.89018 * 356.14784 * 5 4 2 29 29 H 0.96700 * 113.99349 * 63.80625 * 7 6 5 30 30 H 0.96995 * 120.00041 * 180.02562 * 11 10 8 31 31 H 1.08997 * 110.98892 * 153.74849 * 16 6 5 32 32 H 1.09004 * 110.98964 * 277.56039 * 16 6 5 33 33 H 1.08998 * 109.46915 * 60.00572 * 19 17 4 34 34 H 1.09000 * 109.46998 * 179.97438 * 19 17 4 35 35 H 1.08991 * 109.47086 * 300.00245 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4917 -0.7760 1.1973 6 6 3.8650 -2.2694 1.3077 7 8 4.1213 -2.8231 0.0155 8 6 5.0569 -2.4554 2.2109 9 1 4.9642 -3.0411 3.1135 10 6 6.2656 -1.8777 1.8850 11 7 6.3786 -1.1647 0.7856 12 14 7.7428 -2.1077 3.0050 13 1 8.9125 -1.3922 2.4346 14 1 7.4344 -1.5595 4.3501 15 1 8.0562 -3.5547 3.1201 16 6 2.5956 -2.9012 1.9374 17 6 1.4704 -2.0626 1.2816 18 1 1.2445 -2.4412 0.2847 19 6 0.2142 -2.0814 2.1548 20 1 -0.3633 0.4145 0.9404 21 1 -0.3633 0.6070 -0.8292 22 1 -0.3632 -1.0217 -0.1112 23 1 1.8934 -0.5138 -0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8901 26 1 1.6766 1.9564 0.8900 27 1 3.8955 -0.2290 2.0493 28 1 3.8853 -0.3632 0.2685 29 1 4.8825 -2.4329 -0.4355 30 1 7.2290 -0.7587 0.5562 31 1 2.5073 -3.9531 1.6659 32 1 2.5941 -2.7776 3.0204 33 1 -0.5387 -1.4223 1.7225 34 1 -0.1783 -3.0970 2.2049 35 1 0.4643 -1.7382 3.1586 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260471057.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:20 Heat of formation + Delta-G solvation = -56.849402 kcal Electronic energy + Delta-G solvation = -15532.898786 eV Core-core repulsion = 13144.402023 eV Total energy + Delta-G solvation = -2388.496763 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.86898 -35.36300 -32.89418 -32.11471 -30.25728 -28.16124 -26.57640 -25.26721 -23.94964 -20.54272 -19.37882 -19.05257 -16.90810 -15.66078 -15.09757 -14.44671 -14.29199 -13.42617 -13.25551 -13.01403 -12.53281 -12.24448 -11.77522 -11.67831 -11.56740 -11.34898 -11.18693 -11.01778 -10.85312 -10.58110 -10.47257 -10.30905 -10.11616 -10.04691 -9.81592 -9.08198 -8.57769 -8.27836 -7.32197 -6.18456 -4.25962 3.26148 3.30619 3.33902 4.32894 4.71452 5.08569 5.45035 5.46822 5.56738 5.78070 5.84844 5.98404 6.00364 6.03981 6.17342 6.24009 6.28728 6.33711 6.43655 6.44852 6.57782 6.65856 6.71099 6.83704 6.98780 7.13959 7.41814 7.52723 7.79986 7.95181 8.09053 8.20015 8.77083 9.40823 9.48985 10.88302 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039349 B = 0.010341 C = 0.009212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.404153 B = 2706.956503 C = 3038.803933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 C -0.141 4.141 4 N -0.527 5.527 5 C 0.046 3.954 6 C 0.234 3.766 7 O -0.591 6.591 8 C -0.531 4.531 9 H 0.061 0.939 10 C 0.069 3.931 11 N -0.899 5.899 12 Si 0.900 3.100 13 H -0.286 1.286 14 H -0.275 1.275 15 H -0.276 1.276 16 C -0.107 4.107 17 C 0.070 3.930 18 H 0.045 0.955 19 C -0.139 4.139 20 H 0.061 0.939 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.035 0.965 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.379 0.621 30 H 0.267 0.733 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.068 2.217 -0.714 8.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.036 4.036 3 C -0.199 4.199 4 N -0.253 5.253 5 C -0.082 4.082 6 C 0.194 3.806 7 O -0.400 6.400 8 C -0.570 4.570 9 H 0.079 0.921 10 C -0.133 4.133 11 N -0.539 5.539 12 Si 0.727 3.273 13 H -0.212 1.212 14 H -0.201 1.201 15 H -0.202 1.202 16 C -0.145 4.145 17 C -0.039 4.039 18 H 0.063 0.937 19 C -0.197 4.197 20 H 0.080 0.920 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.229 0.771 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.628 2.271 -0.246 8.925 hybrid contribution 1.717 -0.110 -0.310 1.748 sum -6.911 2.162 -0.556 7.262 Atomic orbital electron populations 1.22007 0.95619 1.01202 1.01303 1.21667 0.94498 0.95127 0.92327 1.21832 1.01736 0.95526 1.00785 1.63732 1.09425 1.15841 1.36328 1.23426 0.83526 1.00059 1.01157 1.19778 0.91457 0.87727 0.81633 1.86099 1.53701 1.67112 1.33086 1.21560 0.94855 1.32424 1.08142 0.92080 1.25028 0.98951 0.93993 0.95296 1.69703 1.26117 1.33870 1.24182 0.86531 0.81543 0.78389 0.80818 1.21201 1.20080 1.20164 1.22673 0.94180 0.98179 0.99469 1.22427 0.94792 0.89189 0.97445 0.93717 1.21926 0.97143 1.00171 1.00420 0.92022 0.93251 0.92787 0.94688 0.92177 0.93321 0.92423 0.91047 0.92805 0.77150 0.92322 0.92194 0.90808 0.92677 0.93490 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 7.69 37.16 0.29 -1.82 16 2 C 0.07 1.30 2.22 -67.71 -0.15 1.15 16 3 C -0.14 -2.32 9.11 37.16 0.34 -1.98 16 4 N -0.53 -10.77 4.71 -215.47 -1.01 -11.78 16 5 C 0.05 1.09 4.53 -2.83 -0.01 1.08 16 6 C 0.23 5.94 0.85 -89.94 -0.08 5.86 16 7 O -0.59 -15.68 13.09 -35.23 -0.46 -16.14 16 8 C -0.53 -14.48 8.12 -34.44 -0.28 -14.76 16 9 H 0.06 1.66 7.78 -52.49 -0.41 1.25 16 10 C 0.07 1.85 5.26 -17.82 -0.09 1.76 16 11 N -0.90 -24.20 10.94 55.43 0.61 -23.60 16 12 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 C -0.11 -2.37 5.64 -24.59 -0.14 -2.51 16 17 C 0.07 1.37 2.41 -66.19 -0.16 1.21 16 18 H 0.04 0.91 7.42 -51.93 -0.39 0.52 16 19 C -0.14 -2.23 9.18 37.16 0.34 -1.88 16 20 H 0.06 0.89 7.54 -51.93 -0.39 0.49 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.78 6.14 -51.93 -0.32 0.46 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 1.09 6.69 -51.93 -0.35 0.75 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.85 7.81 -51.93 -0.41 1.44 16 28 H 0.05 1.35 6.34 -51.93 -0.33 1.02 16 29 H 0.38 10.17 7.41 45.56 0.34 10.51 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.07 1.60 7.94 -51.93 -0.41 1.19 16 33 H 0.05 0.80 5.16 -51.93 -0.27 0.54 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 LS Contribution 270.13 15.07 4.07 4.07 Total: -1.00 -27.24 270.13 -6.79 -34.03 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.02 Total: 9.44 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 0.05 Total: -11.90 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.41 Total: -35.38 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.46 Total: -16.14 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.24 -6.79 -34.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260471057.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.820 kcal (2) G-P(sol) polarization free energy of solvation -27.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds