Wall clock time and date at job start Mon Mar 30 2020 20:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46676 * 2 1 4 4 N 1.46897 * 109.47050 * 119.99589 * 2 1 3 5 5 C 1.47442 * 110.99901 * 176.93875 * 4 2 1 6 6 C 1.54323 * 107.23355 * 236.74684 * 5 4 2 7 7 O 1.42897 * 110.71108 * 96.27054 * 6 5 4 8 8 C 1.50705 * 110.70678 * 219.33463 * 6 5 4 9 9 H 1.07993 * 119.99993 * 118.54004 * 8 6 5 10 10 C 1.37873 * 119.99693 * 298.54518 * 8 6 5 11 11 N 1.31520 * 120.00306 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 119.99854 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46989 * 179.97438 * 12 10 8 14 14 H 1.48493 * 109.47410 * 300.00022 * 12 10 8 15 15 H 1.48505 * 109.47087 * 59.99995 * 12 10 8 16 16 C 1.55146 * 103.01523 * 337.71454 * 6 5 4 17 17 C 1.47844 * 110.99823 * 56.09658 * 4 2 1 18 18 H 1.09003 * 110.37360 * 27.42231 * 17 4 2 19 19 C 1.53003 * 110.37341 * 265.18877 * 17 4 2 20 20 H 1.08999 * 109.47142 * 293.78709 * 1 2 3 21 21 H 1.08996 * 109.46966 * 53.79422 * 1 2 3 22 22 H 1.09000 * 109.46471 * 173.78632 * 1 2 3 23 23 H 1.08996 * 109.47295 * 240.00224 * 2 1 3 24 24 H 1.08997 * 109.46756 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.46792 * 299.99636 * 3 2 1 26 26 H 1.08996 * 109.47076 * 60.00089 * 3 2 1 27 27 H 1.09000 * 109.89243 * 117.33867 * 5 4 2 28 28 H 1.08996 * 109.89018 * 356.14784 * 5 4 2 29 29 H 0.96700 * 113.99349 * 63.80625 * 7 6 5 30 30 H 0.96995 * 120.00041 * 180.02562 * 11 10 8 31 31 H 1.08997 * 110.98892 * 153.74849 * 16 6 5 32 32 H 1.09004 * 110.98964 * 277.56039 * 16 6 5 33 33 H 1.08998 * 109.46915 * 60.00572 * 19 17 4 34 34 H 1.09000 * 109.46998 * 179.97438 * 19 17 4 35 35 H 1.08991 * 109.47086 * 300.00245 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4917 -0.7760 1.1973 6 6 3.8650 -2.2694 1.3077 7 8 4.1213 -2.8231 0.0155 8 6 5.0569 -2.4554 2.2109 9 1 4.9642 -3.0411 3.1135 10 6 6.2656 -1.8777 1.8850 11 7 6.3786 -1.1647 0.7856 12 14 7.7428 -2.1077 3.0050 13 1 8.9125 -1.3922 2.4346 14 1 7.4344 -1.5595 4.3501 15 1 8.0562 -3.5547 3.1201 16 6 2.5956 -2.9012 1.9374 17 6 1.4704 -2.0626 1.2816 18 1 1.2445 -2.4412 0.2847 19 6 0.2142 -2.0814 2.1548 20 1 -0.3633 0.4145 0.9404 21 1 -0.3633 0.6070 -0.8292 22 1 -0.3632 -1.0217 -0.1112 23 1 1.8934 -0.5138 -0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8901 26 1 1.6766 1.9564 0.8900 27 1 3.8955 -0.2290 2.0493 28 1 3.8853 -0.3632 0.2685 29 1 4.8825 -2.4329 -0.4355 30 1 7.2290 -0.7587 0.5562 31 1 2.5073 -3.9531 1.6659 32 1 2.5941 -2.7776 3.0204 33 1 -0.5387 -1.4223 1.7225 34 1 -0.1783 -3.0970 2.2049 35 1 0.4643 -1.7382 3.1586 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260471057.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:20 Heat of formation + Delta-G solvation = -76.222785 kcal Electronic energy + Delta-G solvation = -15533.738879 eV Core-core repulsion = 13144.402023 eV Total energy + Delta-G solvation = -2389.336856 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57890 -37.19431 -34.48637 -34.20050 -31.86068 -29.93823 -27.91640 -27.04030 -25.74760 -22.09817 -21.24152 -20.65250 -18.95934 -17.36677 -16.99161 -16.14618 -15.90875 -15.08064 -15.02234 -14.86534 -14.02598 -13.58986 -13.56928 -13.21772 -13.11337 -12.99122 -12.76378 -12.65981 -12.43576 -12.34382 -12.28749 -11.98103 -11.83208 -11.53505 -11.45651 -10.97224 -10.60204 -10.29019 -9.05758 -8.22731 -6.38844 1.40507 1.40851 1.49021 2.37462 3.01287 3.14539 3.87270 4.03100 4.11916 4.14001 4.34067 4.44886 4.50387 4.63810 4.73155 4.83470 4.88974 4.98391 5.00725 5.02754 5.07182 5.13088 5.17604 5.34223 5.44777 5.49321 5.53809 5.56809 5.74598 6.11934 6.25009 6.45042 6.68308 7.30449 7.36938 8.81847 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039349 B = 0.010341 C = 0.009212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.404153 B = 2706.956503 C = 3038.803933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.066 3.934 3 C -0.135 4.135 4 N -0.527 5.527 5 C 0.067 3.933 6 C 0.215 3.785 7 O -0.598 6.598 8 C -0.560 4.560 9 H 0.054 0.946 10 C 0.029 3.971 11 N -0.914 5.914 12 Si 0.960 3.040 13 H -0.280 1.280 14 H -0.271 1.271 15 H -0.274 1.274 16 C -0.106 4.106 17 C 0.074 3.926 18 H 0.038 0.962 19 C -0.130 4.130 20 H 0.069 0.931 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.013 0.987 24 H 0.031 0.969 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.033 0.967 29 H 0.373 0.627 30 H 0.269 0.731 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.413 2.556 -0.345 9.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.043 4.043 3 C -0.193 4.193 4 N -0.252 5.252 5 C -0.062 4.062 6 C 0.175 3.825 7 O -0.406 6.406 8 C -0.598 4.598 9 H 0.073 0.927 10 C -0.172 4.172 11 N -0.554 5.554 12 Si 0.785 3.215 13 H -0.205 1.205 14 H -0.196 1.196 15 H -0.200 1.200 16 C -0.144 4.144 17 C -0.034 4.034 18 H 0.056 0.944 19 C -0.187 4.187 20 H 0.088 0.912 21 H 0.093 0.907 22 H 0.075 0.925 23 H 0.031 0.969 24 H 0.050 0.950 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.221 0.779 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.994 2.609 0.123 10.330 hybrid contribution 2.141 -0.217 -0.464 2.202 sum -7.853 2.391 -0.341 8.216 Atomic orbital electron populations 1.21936 0.92362 1.02081 1.02830 1.21844 0.97073 0.95183 0.90183 1.21791 0.99923 0.95056 1.02528 1.63781 1.07016 1.16557 1.37876 1.22974 0.85967 0.98545 0.98680 1.20061 0.92449 0.89010 0.80946 1.86089 1.53364 1.67395 1.33767 1.21834 0.96291 1.33125 1.08563 0.92730 1.25731 1.01303 0.93556 0.96597 1.69796 1.26663 1.33846 1.25054 0.85582 0.78446 0.78269 0.79156 1.20510 1.19621 1.19976 1.22676 0.93760 0.98482 0.99507 1.22479 0.95393 0.87970 0.97588 0.94425 1.21862 0.95479 1.02032 0.99363 0.91223 0.90740 0.92489 0.96887 0.94965 0.90474 0.91729 0.93851 0.94884 0.77855 0.92175 0.92227 0.90637 0.90730 0.91493 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 7.69 71.98 0.55 -2.96 16 2 C 0.07 2.28 2.22 44.92 0.10 2.38 16 3 C -0.14 -4.31 9.11 71.98 0.66 -3.65 16 4 N -0.53 -21.26 4.71 -835.62 -3.93 -25.19 16 5 C 0.07 3.26 4.53 86.65 0.39 3.66 16 6 C 0.22 11.14 0.85 -10.35 -0.01 11.13 16 7 O -0.60 -32.54 13.09 -148.98 -1.95 -34.49 16 8 C -0.56 -31.10 8.12 25.60 0.21 -30.90 16 9 H 0.05 3.01 7.78 -2.91 -0.02 2.99 16 10 C 0.03 1.54 5.26 84.65 0.45 1.99 16 11 N -0.91 -50.14 10.94 21.45 0.23 -49.90 16 12 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 16 C -0.11 -4.70 5.64 31.98 0.18 -4.51 16 17 C 0.07 2.80 2.41 45.39 0.11 2.91 16 18 H 0.04 1.49 7.42 -2.39 -0.02 1.47 16 19 C -0.13 -3.79 9.18 71.98 0.66 -3.13 16 20 H 0.07 1.73 7.54 -2.39 -0.02 1.71 16 21 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.06 1.46 6.14 -2.39 -0.01 1.44 16 23 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.03 1.18 6.69 -2.39 -0.02 1.16 16 25 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.04 2.32 7.81 -2.39 -0.02 2.31 16 28 H 0.03 1.72 6.34 -2.39 -0.02 1.71 16 29 H 0.37 20.74 7.41 -74.06 -0.55 20.19 16 30 H 0.27 14.07 8.31 -92.71 -0.77 13.29 16 31 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.08 3.26 7.94 -2.38 -0.02 3.24 16 33 H 0.07 1.90 5.16 -2.39 -0.01 1.88 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 Total: -1.00 -58.67 270.13 0.19 -58.49 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.51 Total: 29.10 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 3.30 Total: -23.08 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -3.70 Total: -75.09 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -1.95 Total: -34.49 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -58.67 0.19 -58.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260471057.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.736 kcal (2) G-P(sol) polarization free energy of solvation -58.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds