Wall clock time and date at job start Mon Mar 30 2020 20:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.45011 * 2 1 4 4 C 1.53032 * 109.46239 * 240.02830 * 2 1 3 5 5 H 1.09003 * 109.53725 * 179.19803 * 4 2 1 6 6 C 1.53002 * 109.50844 * 59.10106 * 4 2 1 7 7 C 1.50695 * 109.47582 * 175.19507 * 6 4 2 8 8 H 1.08008 * 119.99911 * 0.02562 * 7 6 4 9 9 C 1.37876 * 120.00368 * 180.02562 * 7 6 4 10 10 N 1.31515 * 119.99680 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00147 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46948 * 90.00249 * 11 9 7 13 13 H 1.48505 * 109.46902 * 209.99745 * 11 9 7 14 14 H 1.48498 * 109.47352 * 330.00077 * 11 9 7 15 15 C 1.53117 * 109.27869 * 299.15718 * 4 2 1 16 16 H 1.09007 * 109.52397 * 182.44267 * 15 4 2 17 17 O 1.42903 * 109.52236 * 62.25361 * 15 4 2 18 18 C 1.53117 * 109.16385 * 302.34876 * 15 4 2 19 19 C 1.53035 * 109.27641 * 57.65238 * 18 15 4 20 20 N 1.46838 * 109.46479 * 119.97152 * 2 1 3 21 21 C 1.46904 * 111.00002 * 294.17891 * 20 2 1 22 22 H 1.09002 * 109.46655 * 189.17689 * 1 2 3 23 23 H 1.08999 * 109.47383 * 309.17382 * 1 2 3 24 24 H 1.09004 * 109.47154 * 69.17956 * 1 2 3 25 25 H 1.09005 * 109.46869 * 55.19591 * 6 4 2 26 26 H 1.09004 * 109.46781 * 295.20007 * 6 4 2 27 27 H 0.97002 * 120.00032 * 179.97438 * 10 9 7 28 28 H 0.96702 * 114.00083 * 179.97438 * 17 15 4 29 29 H 1.08993 * 109.50420 * 177.59478 * 18 15 4 30 30 H 1.09001 * 109.50183 * 297.71212 * 18 15 4 31 31 H 1.08996 * 109.46456 * 60.83977 * 19 18 15 32 32 H 1.08996 * 109.46253 * 180.80795 * 19 18 15 33 33 H 1.09004 * 109.47156 * 180.25604 * 21 20 2 34 34 H 1.08994 * 109.47500 * 300.25688 * 21 20 2 35 35 H 1.08997 * 109.47082 * 60.25913 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2499 5 1 3.1298 -0.7091 -1.2584 6 6 1.5118 -0.0128 -2.4992 7 6 2.1083 -0.6499 -3.7277 8 1 2.7950 -1.4775 -3.6276 9 6 1.7773 -0.1764 -4.9797 10 7 0.9407 0.8310 -5.1017 11 14 2.5161 -0.9667 -6.5025 12 1 1.6382 -2.0730 -6.9615 13 1 2.6357 0.0494 -7.5789 14 1 3.8616 -1.5047 -6.1778 15 6 1.5444 -2.1695 -1.2355 16 1 1.9411 -2.6989 -2.1020 17 8 0.1161 -2.1862 -1.2770 18 6 2.0270 -2.8531 0.0467 19 6 1.5175 -2.0704 1.2591 20 7 2.0193 -0.6916 1.1993 21 6 1.6651 0.0507 2.4165 22 1 -0.3633 -1.0146 0.1639 23 1 -0.3634 0.6491 0.7967 24 1 -0.3634 0.3653 -0.9606 25 1 1.7901 1.0406 -2.4648 26 1 0.4260 -0.1007 -2.5350 27 1 0.7082 1.1644 -5.9824 28 1 -0.2673 -3.0739 -1.2709 29 1 1.6417 -3.8720 0.0832 30 1 3.1168 -2.8749 0.0595 31 1 0.4276 -2.0608 1.2532 32 1 1.8714 -2.5464 2.1735 33 1 2.0434 -0.4812 3.2895 34 1 2.1082 1.0457 2.3771 35 1 0.5809 0.1383 2.4861 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260765271.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:40 Heat of formation + Delta-G solvation = -74.651454 kcal Electronic energy + Delta-G solvation = -15502.463877 eV Core-core repulsion = 13113.195160 eV Total energy + Delta-G solvation = -2389.268718 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.02477 -37.02815 -35.56591 -33.58044 -32.65876 -29.99411 -27.78031 -26.60093 -25.20209 -23.09730 -22.06161 -19.52940 -18.58913 -17.63161 -17.06892 -16.41470 -16.08808 -15.51056 -15.10128 -14.86484 -14.36967 -14.06870 -13.85314 -13.51060 -13.16634 -12.96779 -12.76886 -12.66623 -12.39935 -12.23366 -12.08595 -11.90431 -11.71728 -11.32802 -11.09471 -10.69137 -10.47964 -10.21815 -9.09630 -8.14314 -6.23059 1.39401 1.40916 1.51586 2.42807 3.09720 3.18818 3.63216 3.93043 4.01072 4.22201 4.26893 4.44440 4.51724 4.57891 4.67957 4.75176 4.84506 4.93931 4.99122 5.03535 5.08616 5.15543 5.29665 5.33092 5.37276 5.57005 5.64819 5.81531 5.98987 6.20158 6.31841 6.35842 6.92580 7.14873 7.43947 8.97846 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046552 B = 0.008978 C = 0.008422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.335034 B = 3118.132330 C = 3323.809485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.094 3.906 3 H 0.055 0.945 4 C -0.061 4.061 5 H 0.059 0.941 6 C 0.042 3.958 7 C -0.525 4.525 8 H 0.058 0.942 9 C -0.003 4.003 10 N -0.935 5.935 11 Si 0.960 3.040 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.263 1.263 15 C 0.120 3.880 16 H 0.041 0.959 17 O -0.562 6.562 18 C -0.141 4.141 19 C 0.057 3.943 20 N -0.548 5.548 21 C 0.024 3.976 22 H 0.093 0.907 23 H 0.043 0.957 24 H 0.035 0.965 25 H -0.025 1.025 26 H 0.007 0.993 27 H 0.260 0.740 28 H 0.376 0.624 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.511 -7.476 12.945 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.014 4.014 3 H 0.074 0.926 4 C -0.080 4.080 5 H 0.078 0.922 6 C 0.004 3.996 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.200 4.200 10 N -0.576 5.576 11 Si 0.785 3.215 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.187 1.187 15 C 0.061 3.939 16 H 0.059 0.941 17 O -0.369 6.369 18 C -0.178 4.178 19 C -0.071 4.071 20 N -0.272 5.272 21 C -0.124 4.124 22 H 0.111 0.889 23 H 0.062 0.938 24 H 0.054 0.946 25 H -0.007 1.007 26 H 0.025 0.975 27 H 0.069 0.931 28 H 0.224 0.776 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.046 -6.744 12.807 14.512 hybrid contribution -0.701 -0.302 -1.175 1.401 sum 0.345 -7.047 11.632 13.604 Atomic orbital electron populations 1.22500 0.96828 1.03487 1.00101 1.21473 0.93609 0.96448 0.89909 0.92643 1.21116 0.98420 0.94479 0.93993 0.92238 1.18916 0.95750 0.93053 0.91847 1.21606 1.26198 1.16388 0.92144 0.92400 1.25937 0.95765 0.95686 1.02594 1.70121 1.36094 1.27333 1.24075 0.85520 0.79126 0.78129 0.78696 1.19896 1.21017 1.18718 1.21606 0.80907 0.95552 0.95796 0.94122 1.86723 1.19976 1.33237 1.96919 1.22273 1.01966 0.99326 0.94279 1.22076 0.98072 0.88316 0.98592 1.62212 1.59714 1.03049 1.02199 1.22392 0.98907 0.98978 0.92107 0.88912 0.93816 0.94612 1.00698 0.97477 0.93098 0.77641 0.88995 0.90885 0.94044 0.89243 0.89727 0.91835 0.95472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.32 7.19 71.98 0.52 -5.80 16 2 C 0.09 3.53 2.47 44.94 0.11 3.64 16 3 H 0.06 2.22 8.12 -2.39 -0.02 2.20 16 4 C -0.06 -2.63 2.05 -10.74 -0.02 -2.65 16 5 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 6 C 0.04 2.28 3.86 29.85 0.12 2.40 16 7 C -0.53 -30.36 8.44 25.60 0.22 -30.14 16 8 H 0.06 3.20 7.06 -2.91 -0.02 3.18 16 9 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 10 N -0.94 -58.68 13.29 21.45 0.28 -58.39 16 11 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 14 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 15 C 0.12 4.36 3.03 30.67 0.09 4.45 16 16 H 0.04 1.62 7.03 -2.38 -0.02 1.61 16 17 O -0.56 -19.91 8.51 -148.98 -1.27 -21.18 16 18 C -0.14 -3.77 5.80 30.65 0.18 -3.60 16 19 C 0.06 1.47 5.11 86.32 0.44 1.91 16 20 N -0.55 -16.59 4.86 -897.21 -4.36 -20.94 16 21 C 0.02 0.58 9.31 127.69 1.19 1.77 16 22 H 0.09 3.23 3.69 -2.39 -0.01 3.22 16 23 H 0.04 1.42 7.01 -2.39 -0.02 1.41 16 24 H 0.03 1.57 6.06 -2.38 -0.01 1.56 16 25 H -0.03 -1.54 8.14 -2.38 -0.02 -1.56 16 26 H 0.01 0.42 5.82 -2.39 -0.01 0.40 16 27 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.38 9.52 9.09 -74.06 -0.67 8.84 16 29 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.10 5.82 -2.39 -0.01 1.08 16 32 H 0.09 1.86 8.09 -2.39 -0.02 1.84 16 33 H 0.08 1.64 8.10 -2.38 -0.02 1.62 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.03 0.65 6.68 -2.39 -0.02 0.63 16 Total: -1.00 -67.97 261.81 0.39 -67.59 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.40 Total: 13.39 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 3.30 Total: -27.73 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -4.07 Total: -79.34 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -1.27 Total: -21.18 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -67.97 0.39 -67.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260765271.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.064 kcal (2) G-P(sol) polarization free energy of solvation -67.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds