Wall clock time and date at job start Mon Mar 30 2020 20:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46135 * 2 1 4 4 C 1.53035 * 109.45433 * 240.02612 * 2 1 3 5 5 C 1.53117 * 109.28067 * 180.80947 * 4 2 1 6 6 H 1.09004 * 109.57633 * 297.71808 * 5 4 2 7 7 O 1.42899 * 109.52588 * 177.56236 * 5 4 2 8 8 C 1.53117 * 109.15945 * 57.65280 * 5 4 2 9 9 H 1.08998 * 109.50299 * 62.29118 * 8 5 4 10 10 C 1.53006 * 109.50286 * 182.40656 * 8 5 4 11 11 C 1.50703 * 109.47084 * 184.80311 * 10 8 5 12 12 H 1.07993 * 120.00105 * 0.02562 * 11 10 8 13 13 C 1.37876 * 119.99850 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99876 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99937 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47113 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47369 * 119.99609 * 15 13 11 18 18 H 1.48507 * 109.46966 * 239.99418 * 15 13 11 19 19 C 1.53033 * 109.28196 * 302.34618 * 8 5 4 20 20 N 1.46845 * 109.46378 * 119.97929 * 2 1 3 21 21 C 1.46903 * 110.99954 * 305.84495 * 20 2 1 22 22 H 1.08998 * 109.46794 * 299.99909 * 1 2 3 23 23 H 1.08992 * 109.47327 * 60.00272 * 1 2 3 24 24 H 1.09002 * 109.46587 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.50627 * 300.74696 * 4 2 1 26 26 H 1.09001 * 109.50255 * 60.86657 * 4 2 1 27 27 H 0.96691 * 114.00578 * 60.31424 * 7 5 4 28 28 H 1.08998 * 109.47435 * 304.80395 * 10 8 5 29 29 H 1.09003 * 109.46715 * 64.80299 * 10 8 5 30 30 H 0.97006 * 119.99606 * 179.97438 * 14 13 11 31 31 H 1.09007 * 109.46547 * 299.16541 * 19 8 5 32 32 H 1.09000 * 109.46103 * 179.19001 * 19 8 5 33 33 H 1.08998 * 109.47039 * 59.99634 * 21 20 2 34 34 H 1.08997 * 109.47215 * 180.02562 * 21 20 2 35 35 H 1.09003 * 109.46876 * 300.00227 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7209 -1.2500 5 6 3.5708 -0.7363 -1.2358 6 1 3.9466 0.2864 -1.2680 7 8 4.0517 -1.4577 -2.3717 8 6 4.0546 -1.4191 0.0464 9 1 3.7122 -2.4538 0.0592 10 6 5.5834 -1.3855 0.0975 11 6 6.0631 -2.1596 1.2982 12 1 5.3491 -2.6289 1.9586 13 6 7.4136 -2.2685 1.5536 14 7 8.2832 -1.6974 0.7491 15 14 8.0083 -3.2286 3.0416 16 1 6.8396 -3.7701 3.7806 17 1 8.8741 -4.3491 2.5941 18 1 8.7839 -2.3293 3.9332 19 6 3.4866 -0.6780 1.2589 20 7 2.0193 -0.6918 1.1993 21 6 1.4375 -0.1106 2.4165 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 1.6656 -1.7447 -1.2577 26 1 1.6893 -0.1981 -2.1399 27 1 3.7825 -1.0802 -3.2203 28 1 5.9873 -1.8350 -0.8097 29 1 5.9217 -0.3520 0.1725 30 1 9.2333 -1.7737 0.9290 31 1 3.8406 0.3530 1.2530 32 1 3.8175 -1.1704 2.1733 33 1 0.3519 -0.2010 2.3793 34 1 1.8170 -0.6412 3.2898 35 1 1.7123 0.9421 2.4837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260780796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:54 Heat of formation + Delta-G solvation = -63.165121 kcal Electronic energy + Delta-G solvation = -15048.594442 eV Core-core repulsion = 12659.823809 eV Total energy + Delta-G solvation = -2388.770633 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.23850 -36.13802 -33.85131 -31.94709 -31.69882 -28.39087 -26.13639 -25.24838 -23.01722 -21.85781 -19.98156 -19.15800 -16.73994 -16.24043 -15.38060 -14.97367 -14.64795 -14.29955 -13.74178 -13.18937 -13.09608 -12.32186 -12.27295 -12.07160 -11.69635 -11.68618 -11.53737 -11.13420 -10.83020 -10.78976 -10.63181 -10.46753 -10.05858 -9.73820 -9.50055 -8.97418 -8.82340 -8.27024 -7.95554 -5.92066 -3.93396 3.35403 3.42897 3.47199 4.22355 4.51950 4.71147 5.02465 5.16075 5.28559 5.43555 5.47568 5.55016 5.67354 5.72371 5.77527 5.84283 5.91139 6.02916 6.11398 6.13867 6.31169 6.36598 6.46150 6.76438 6.91819 7.14057 7.46046 7.52747 7.79449 7.96261 8.10981 8.20523 8.51052 9.13942 9.69597 11.19355 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.035917 B = 0.008801 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.398049 B = 3180.796965 C = 3793.423068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.084 3.916 3 H 0.035 0.965 4 C -0.142 4.142 5 C 0.106 3.894 6 H 0.043 0.957 7 O -0.554 6.554 8 C -0.068 4.068 9 H 0.072 0.928 10 C 0.031 3.969 11 C -0.514 4.514 12 H 0.057 0.943 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.888 3.112 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.286 1.286 19 C 0.072 3.928 20 N -0.543 5.543 21 C 0.024 3.976 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.363 0.637 28 H 0.030 0.970 29 H 0.010 0.990 30 H 0.258 0.742 31 H 0.027 0.973 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.811 4.699 -1.825 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 H 0.053 0.947 4 C -0.180 4.180 5 C 0.047 3.953 6 H 0.061 0.939 7 O -0.358 6.358 8 C -0.087 4.087 9 H 0.090 0.910 10 C -0.007 4.007 11 C -0.553 4.553 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.054 4.054 20 N -0.268 5.268 21 C -0.125 4.125 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.207 0.793 28 H 0.048 0.952 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -13.513 3.860 -1.393 14.123 hybrid contribution 0.456 0.785 0.437 1.008 sum -13.057 4.646 -0.956 13.892 Atomic orbital electron populations 1.21911 0.94783 1.02402 1.01215 1.21504 0.94871 0.95212 0.90913 0.94661 1.22380 0.97498 1.01809 0.96310 1.22025 0.90820 0.94651 0.87789 0.93852 1.86683 1.77537 1.56081 1.15455 1.21234 0.99584 0.98867 0.88990 0.90973 1.19082 0.87098 0.96885 0.97620 1.21314 0.91593 1.32458 1.09911 0.92518 1.25017 0.97072 0.95852 0.96558 1.69991 1.01540 1.44616 1.37382 0.86592 0.78808 0.79889 0.83059 1.19729 1.21069 1.21182 1.22157 0.83850 0.98734 1.00702 1.62040 1.09121 1.54272 1.01353 1.22379 0.99928 0.97053 0.93108 0.92601 0.92629 0.91813 0.90496 0.92258 0.79263 0.95199 0.97119 0.93203 0.95503 0.89156 0.91591 0.91428 0.96197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.77 37.16 0.33 -1.33 16 2 C 0.08 1.20 2.44 -67.72 -0.17 1.04 16 3 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.14 -2.10 5.00 -26.65 -0.13 -2.23 16 5 C 0.11 1.94 2.95 -26.61 -0.08 1.86 16 6 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 7 O -0.55 -10.28 12.68 -35.23 -0.45 -10.73 16 8 C -0.07 -1.48 2.03 -90.54 -0.18 -1.66 16 9 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 10 C 0.03 0.82 4.39 -27.88 -0.12 0.70 16 11 C -0.51 -14.75 8.42 -34.44 -0.29 -15.04 16 12 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 15 Si 0.89 22.06 29.54 -169.99 -5.02 17.03 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 C 0.07 1.42 4.54 -3.83 -0.02 1.40 16 20 N -0.54 -8.89 4.75 -234.92 -1.11 -10.01 16 21 C 0.02 0.32 9.05 60.07 0.54 0.86 16 22 H 0.06 0.58 6.32 -51.93 -0.33 0.25 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.36 4.68 9.09 45.56 0.41 5.10 16 28 H 0.03 0.88 7.63 -51.93 -0.40 0.48 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 1.90 6.92 -51.93 -0.36 1.54 16 33 H 0.07 0.77 6.21 -51.93 -0.32 0.45 16 34 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 35 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 275.66 15.07 4.15 4.15 Total: -1.00 -31.85 275.66 -7.06 -38.91 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.15 Total: 0.32 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -0.22 Total: -12.87 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.38 Total: -36.81 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.45 Total: -10.73 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.85 -7.06 -38.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260780796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.258 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds