Wall clock time and date at job start Mon Mar 30 2020 20:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46135 * 2 1 4 4 C 1.53035 * 109.45433 * 240.02612 * 2 1 3 5 5 C 1.53117 * 109.28067 * 180.80947 * 4 2 1 6 6 H 1.09004 * 109.57633 * 297.71808 * 5 4 2 7 7 O 1.42899 * 109.52588 * 177.56236 * 5 4 2 8 8 C 1.53117 * 109.15945 * 57.65280 * 5 4 2 9 9 H 1.08998 * 109.50299 * 62.29118 * 8 5 4 10 10 C 1.53006 * 109.50286 * 182.40656 * 8 5 4 11 11 C 1.50703 * 109.47084 * 184.80311 * 10 8 5 12 12 H 1.07993 * 120.00105 * 0.02562 * 11 10 8 13 13 C 1.37876 * 119.99850 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99876 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99937 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47113 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47369 * 119.99609 * 15 13 11 18 18 H 1.48507 * 109.46966 * 239.99418 * 15 13 11 19 19 C 1.53033 * 109.28196 * 302.34618 * 8 5 4 20 20 N 1.46845 * 109.46378 * 119.97929 * 2 1 3 21 21 C 1.46903 * 110.99954 * 305.84495 * 20 2 1 22 22 H 1.08998 * 109.46794 * 299.99909 * 1 2 3 23 23 H 1.08992 * 109.47327 * 60.00272 * 1 2 3 24 24 H 1.09002 * 109.46587 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.50627 * 300.74696 * 4 2 1 26 26 H 1.09001 * 109.50255 * 60.86657 * 4 2 1 27 27 H 0.96691 * 114.00578 * 60.31424 * 7 5 4 28 28 H 1.08998 * 109.47435 * 304.80395 * 10 8 5 29 29 H 1.09003 * 109.46715 * 64.80299 * 10 8 5 30 30 H 0.97006 * 119.99606 * 179.97438 * 14 13 11 31 31 H 1.09007 * 109.46547 * 299.16541 * 19 8 5 32 32 H 1.09000 * 109.46103 * 179.19001 * 19 8 5 33 33 H 1.08998 * 109.47039 * 59.99634 * 21 20 2 34 34 H 1.08997 * 109.47215 * 180.02562 * 21 20 2 35 35 H 1.09003 * 109.46876 * 300.00227 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7209 -1.2500 5 6 3.5708 -0.7363 -1.2358 6 1 3.9466 0.2864 -1.2680 7 8 4.0517 -1.4577 -2.3717 8 6 4.0546 -1.4191 0.0464 9 1 3.7122 -2.4538 0.0592 10 6 5.5834 -1.3855 0.0975 11 6 6.0631 -2.1596 1.2982 12 1 5.3491 -2.6289 1.9586 13 6 7.4136 -2.2685 1.5536 14 7 8.2832 -1.6974 0.7491 15 14 8.0083 -3.2286 3.0416 16 1 6.8396 -3.7701 3.7806 17 1 8.8741 -4.3491 2.5941 18 1 8.7839 -2.3293 3.9332 19 6 3.4866 -0.6780 1.2589 20 7 2.0193 -0.6918 1.1993 21 6 1.4375 -0.1106 2.4165 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 1.6656 -1.7447 -1.2577 26 1 1.6893 -0.1981 -2.1399 27 1 3.7825 -1.0802 -3.2203 28 1 5.9873 -1.8350 -0.8097 29 1 5.9217 -0.3520 0.1725 30 1 9.2333 -1.7737 0.9290 31 1 3.8406 0.3530 1.2530 32 1 3.8175 -1.1704 2.1733 33 1 0.3519 -0.2010 2.3793 34 1 1.8170 -0.6412 3.2898 35 1 1.7123 0.9421 2.4837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260780796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:54 Heat of formation + Delta-G solvation = -87.517541 kcal Electronic energy + Delta-G solvation = -15049.650442 eV Core-core repulsion = 12659.823809 eV Total energy + Delta-G solvation = -2389.826633 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.62364 -37.52366 -35.78632 -33.76564 -33.04463 -30.00360 -27.48731 -26.91108 -24.60474 -23.48500 -21.38853 -20.68878 -18.49872 -18.15127 -16.74888 -16.56047 -16.10084 -15.86013 -15.29519 -14.53386 -14.30202 -14.17173 -13.90182 -13.57439 -13.17432 -13.02294 -12.84247 -12.69671 -12.51762 -12.34754 -12.24078 -11.80462 -11.77347 -11.60623 -11.27517 -10.85212 -10.57163 -10.50686 -9.23925 -8.18062 -6.28328 1.38556 1.39637 1.52956 2.41360 2.97169 3.15505 3.39810 3.83003 3.88681 4.05578 4.18081 4.34617 4.44102 4.52179 4.56545 4.66772 4.74527 4.86484 4.95247 4.98287 5.01596 5.09192 5.11458 5.26406 5.29685 5.40156 5.52549 5.76439 5.85710 6.15800 6.26106 6.27754 6.86488 7.02966 7.39952 8.94341 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.035917 B = 0.008801 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.398049 B = 3180.796965 C = 3793.423068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.078 3.922 3 H 0.036 0.964 4 C -0.130 4.130 5 C 0.107 3.893 6 H 0.041 0.959 7 O -0.580 6.580 8 C -0.063 4.063 9 H 0.051 0.949 10 C 0.041 3.959 11 C -0.532 4.532 12 H 0.060 0.940 13 C -0.002 4.002 14 N -0.935 5.935 15 Si 0.963 3.037 16 H -0.261 1.261 17 H -0.279 1.279 18 H -0.276 1.276 19 C 0.086 3.914 20 N -0.551 5.551 21 C 0.022 3.978 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.387 0.613 28 H -0.009 1.009 29 H -0.015 1.015 30 H 0.262 0.738 31 H 0.019 0.981 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.827 4.938 -1.255 16.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 H 0.054 0.946 4 C -0.168 4.168 5 C 0.049 3.951 6 H 0.059 0.941 7 O -0.387 6.387 8 C -0.082 4.082 9 H 0.070 0.930 10 C 0.003 3.997 11 C -0.570 4.570 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.576 5.576 15 Si 0.788 3.212 16 H -0.185 1.185 17 H -0.205 1.205 18 H -0.202 1.202 19 C -0.042 4.042 20 N -0.277 5.277 21 C -0.125 4.125 22 H 0.086 0.914 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.113 0.887 27 H 0.236 0.764 28 H 0.009 0.991 29 H 0.004 0.996 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -15.561 4.110 -0.837 16.117 hybrid contribution 1.094 0.729 0.195 1.329 sum -14.467 4.839 -0.642 15.269 Atomic orbital electron populations 1.21857 0.91822 1.02804 1.02976 1.21682 0.97119 0.94737 0.89527 0.94587 1.22289 0.94085 1.02081 0.98341 1.21911 0.93528 0.93563 0.86128 0.94127 1.86619 1.78326 1.56825 1.16940 1.21038 0.96021 0.98645 0.92533 0.93006 1.18878 0.90874 0.94545 0.95364 1.21672 0.92141 1.32652 1.10505 0.92178 1.25986 0.97243 0.96850 0.99879 1.70129 1.02014 1.46002 1.39459 0.85422 0.78461 0.78332 0.78994 1.18525 1.20513 1.20205 1.21806 0.86536 0.97436 0.98429 1.62003 1.06563 1.55651 1.03446 1.22470 1.01298 0.97085 0.91666 0.91393 0.90422 0.92034 0.91262 0.88661 0.76397 0.99064 0.99639 0.92892 0.96276 0.91261 0.88907 0.91829 0.95635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.77 71.98 0.63 -1.93 16 2 C 0.08 2.02 2.44 44.94 0.11 2.13 16 3 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.13 -3.55 5.00 30.65 0.15 -3.40 16 5 C 0.11 3.92 2.95 30.67 0.09 4.01 16 6 H 0.04 1.49 8.14 -2.38 -0.02 1.48 16 7 O -0.58 -21.60 12.68 -148.98 -1.89 -23.49 16 8 C -0.06 -2.84 2.03 -10.74 -0.02 -2.86 16 9 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 10 C 0.04 2.31 4.39 29.85 0.13 2.44 16 11 C -0.53 -31.47 8.42 25.60 0.22 -31.26 16 12 H 0.06 3.43 7.06 -2.91 -0.02 3.41 16 13 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 14 N -0.94 -59.11 13.29 21.45 0.28 -58.82 16 15 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 16 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 C 0.09 3.40 4.54 86.32 0.39 3.80 16 20 N -0.55 -17.30 4.75 -897.16 -4.26 -21.56 16 21 C 0.02 0.56 9.05 127.69 1.16 1.72 16 22 H 0.07 1.12 6.32 -2.39 -0.02 1.11 16 23 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.39 9.61 9.09 -74.06 -0.67 8.93 16 28 H -0.01 -0.57 7.63 -2.39 -0.02 -0.59 16 29 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 30 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 31 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.07 2.99 6.92 -2.39 -0.02 2.97 16 33 H 0.09 1.84 6.21 -2.39 -0.01 1.82 16 34 H 0.06 1.63 8.09 -2.39 -0.02 1.61 16 35 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -70.78 275.66 -0.14 -70.92 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.38 Total: 10.20 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 3.32 Total: -25.04 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -3.97 Total: -80.38 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -1.89 Total: -23.49 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -70.78 -0.14 -70.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260780796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.598 kcal (2) G-P(sol) polarization free energy of solvation -70.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds