Wall clock time and date at job start Mon Mar 30 2020 20:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 108.96139 * 2 1 4 4 C 1.53820 * 108.98326 * 241.18818 * 2 1 3 5 5 C 1.50810 * 111.61821 * 198.40153 * 4 2 1 6 6 N 1.47636 * 108.04187 * 95.06587 * 5 4 2 7 7 C 1.46905 * 111.00155 * 150.32459 * 6 5 4 8 8 C 1.39784 * 114.76167 * 277.17678 * 6 5 4 9 9 C 1.54437 * 111.69987 * 62.31761 * 8 6 5 10 10 H 1.08999 * 109.54302 * 42.43324 * 9 8 6 11 11 O 1.42899 * 109.54380 * 162.70394 * 9 8 6 12 12 C 1.50813 * 109.00396 * 282.49467 * 9 8 6 13 13 H 1.08997 * 108.89297 * 332.31628 * 12 9 8 14 14 C 1.50699 * 108.80185 * 213.83639 * 12 9 8 15 15 H 1.08001 * 120.00184 * 322.05058 * 14 12 9 16 16 C 1.37872 * 120.00126 * 142.05394 * 14 12 9 17 17 N 1.31524 * 119.99976 * 6.12390 * 16 14 12 18 18 Si 1.86793 * 120.00434 * 186.12653 * 16 14 12 19 19 H 1.48499 * 109.47131 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47430 * 119.99745 * 18 16 14 21 21 H 1.48504 * 109.47325 * 239.99716 * 18 16 14 22 22 H 1.09004 * 109.47200 * 184.29710 * 1 2 3 23 23 H 1.08999 * 109.47429 * 304.29974 * 1 2 3 24 24 H 1.08998 * 109.47163 * 64.30055 * 1 2 3 25 25 H 1.08995 * 109.04870 * 77.84626 * 4 2 1 26 26 H 1.09005 * 108.98872 * 318.91531 * 4 2 1 27 27 H 1.09001 * 109.75082 * 335.42772 * 5 4 2 28 28 H 1.09002 * 109.74897 * 214.69394 * 5 4 2 29 29 H 1.08994 * 109.46806 * 188.90213 * 7 6 5 30 30 H 1.09002 * 109.46665 * 308.89613 * 7 6 5 31 31 H 1.08998 * 109.47006 * 68.89364 * 7 6 5 32 32 H 1.08991 * 109.02247 * 182.86297 * 8 6 5 33 33 H 1.09000 * 109.02197 * 301.76682 * 8 6 5 34 34 H 0.96702 * 113.99403 * 300.00104 * 11 9 8 35 35 H 0.96997 * 120.00016 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8842 1.0309 0.0000 4 6 2.0304 -0.7010 -1.2745 5 6 3.4691 -1.1334 -1.1424 6 7 3.4844 -2.5430 -0.7035 7 6 4.6803 -3.2363 -1.2008 8 6 3.3341 -2.7290 0.6737 9 6 1.9710 -2.2041 1.1754 10 1 1.1887 -2.4916 0.4730 11 8 1.6889 -2.7593 2.4615 12 6 2.0315 -0.7007 1.2785 13 1 3.0630 -0.4008 1.4631 14 6 1.1810 -0.2590 2.4415 15 1 0.2480 -0.7615 2.6498 16 6 1.5939 0.7867 3.2395 17 7 2.6664 1.4764 2.9170 18 14 0.6303 1.2240 4.7788 19 1 -0.5267 0.3033 4.9168 20 1 1.5109 1.0947 5.9676 21 1 0.1402 2.6221 4.6756 22 1 -0.3634 -1.0248 0.0770 23 1 -0.3634 0.5791 0.8489 24 1 -0.3633 0.4456 -0.9260 25 1 1.9410 -0.0146 -2.1164 26 1 1.4111 -1.5779 -1.4633 27 1 3.9741 -0.5119 -0.4029 28 1 3.9710 -1.0423 -2.1056 29 1 4.5910 -4.3039 -1.0001 30 1 4.7733 -3.0751 -2.2748 31 1 5.5635 -2.8442 -0.6967 32 1 3.4097 -3.7927 0.8989 33 1 4.1321 -2.1985 1.1931 34 1 1.6432 -3.7252 2.4714 35 1 2.9571 2.2119 3.4787 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260881212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:15 Heat of formation + Delta-G solvation = -48.735425 kcal Electronic energy + Delta-G solvation = -15625.151216 eV Core-core repulsion = 13237.006301 eV Total energy + Delta-G solvation = -2388.144914 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.11492 -35.65669 -34.67062 -32.14181 -29.88152 -28.44304 -26.62141 -24.48872 -22.83116 -22.13959 -20.17524 -17.92561 -16.62340 -15.97584 -15.24007 -14.89075 -14.41343 -14.06617 -13.66861 -13.05754 -12.69888 -12.23279 -11.96943 -11.83709 -11.64888 -11.35789 -11.02620 -10.96366 -10.80889 -10.63084 -10.29938 -9.92804 -9.69246 -9.53344 -9.19895 -8.65169 -8.46889 -8.20354 -7.75579 -5.86846 -3.80857 3.39390 3.47140 3.53248 4.35758 4.58261 5.25816 5.42132 5.45351 5.61463 5.69507 5.75985 5.87790 5.93647 6.01114 6.10237 6.17132 6.28924 6.41459 6.54062 6.63754 6.73334 6.85405 6.89596 7.03062 7.40306 7.48081 7.57997 7.72654 7.79566 7.91344 8.09809 8.47106 8.84195 9.23087 9.77308 11.24270 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036681 B = 0.011010 C = 0.010161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.162190 B = 2542.478801 C = 2755.036343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.076 4.076 3 H 0.061 0.939 4 C -0.117 4.117 5 C 0.065 3.935 6 N -0.555 5.555 7 C 0.032 3.968 8 C 0.043 3.957 9 C 0.119 3.881 10 H 0.043 0.957 11 O -0.534 6.534 12 C 0.040 3.960 13 H 0.055 0.945 14 C -0.466 4.466 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.903 5.903 18 Si 0.887 3.113 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.289 1.289 22 H 0.037 0.963 23 H 0.066 0.934 24 H 0.021 0.979 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.020 0.980 32 H 0.055 0.945 33 H 0.025 0.975 34 H 0.342 0.658 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 -6.784 -7.455 10.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.095 4.095 3 H 0.079 0.921 4 C -0.155 4.155 5 C -0.061 4.061 6 N -0.280 5.280 7 C -0.116 4.116 8 C -0.087 4.087 9 C 0.060 3.940 10 H 0.061 0.939 11 O -0.335 6.335 12 C 0.021 3.979 13 H 0.073 0.927 14 C -0.504 4.504 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.543 5.543 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.216 1.216 22 H 0.056 0.944 23 H 0.085 0.915 24 H 0.040 0.960 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.185 0.815 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.060 -6.174 -7.380 9.680 hybrid contribution 0.379 0.047 1.086 1.151 sum 1.439 -6.127 -6.294 8.901 Atomic orbital electron populations 1.21701 0.96600 1.00352 0.99459 1.21611 0.95047 0.99503 0.93376 0.92060 1.21583 0.95358 0.99960 0.98572 1.21848 0.98259 0.86887 0.99129 1.58857 1.38879 1.15113 1.15190 1.22319 0.90813 0.98616 0.99833 1.21776 1.00094 0.99509 0.87306 1.21735 0.91679 0.97522 0.83072 0.93884 1.87008 1.93645 1.21661 1.31153 1.18778 0.99455 0.86894 0.92751 0.92715 1.20854 1.05840 1.13639 1.10104 0.92532 1.24928 0.95300 0.96624 0.97604 1.69947 1.25025 1.20988 1.38378 0.86610 0.80146 0.77695 0.83941 1.19831 1.21348 1.21561 0.94413 0.91493 0.95959 0.93404 0.91697 0.93071 0.92123 0.92108 0.91874 0.96105 0.92620 0.95739 0.81485 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 8.31 37.16 0.31 -2.27 16 2 C -0.08 -1.67 2.53 -89.58 -0.23 -1.90 16 3 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 4 C -0.12 -2.12 4.79 -27.40 -0.13 -2.25 16 5 C 0.07 1.14 5.37 -4.52 -0.02 1.11 16 6 N -0.55 -9.41 4.19 -248.32 -1.04 -10.45 16 7 C 0.03 0.44 9.46 60.07 0.57 1.01 16 8 C 0.04 0.81 4.59 -6.74 -0.03 0.78 16 9 C 0.12 2.56 2.93 -27.07 -0.08 2.48 16 10 H 0.04 0.91 6.31 -51.93 -0.33 0.58 16 11 O -0.53 -11.70 11.78 -35.23 -0.42 -12.12 16 12 C 0.04 0.98 1.47 -92.26 -0.14 0.85 16 13 H 0.05 1.54 5.74 -51.93 -0.30 1.24 16 14 C -0.47 -12.89 5.00 -34.44 -0.17 -13.06 16 15 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 16 C 0.05 1.56 5.45 -17.82 -0.10 1.47 16 17 N -0.90 -26.77 12.81 55.43 0.71 -26.06 16 18 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 19 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H 0.04 0.76 7.33 -51.93 -0.38 0.38 16 23 H 0.07 1.53 6.92 -51.93 -0.36 1.17 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.18 7.09 -51.93 -0.37 0.81 16 27 H 0.05 1.02 6.66 -51.93 -0.35 0.68 16 28 H 0.06 0.90 7.62 -51.93 -0.40 0.51 16 29 H 0.06 0.74 8.04 -51.93 -0.42 0.32 16 30 H 0.06 0.75 7.83 -51.93 -0.41 0.34 16 31 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.92 7.89 -51.93 -0.41 0.51 16 33 H 0.02 0.52 7.54 -51.93 -0.39 0.13 16 34 H 0.34 5.56 9.05 45.56 0.41 5.97 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 266.07 15.07 4.01 4.01 Total: -1.00 -30.42 266.07 -6.69 -37.11 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.91 Total: 1.99 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -0.02 Total: -11.80 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.33 Total: -36.50 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.42 Total: -12.12 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.42 -6.69 -37.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260881212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.621 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds