Wall clock time and date at job start Mon Mar 30 2020 20:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.53396 * 2 1 4 4 C 1.53037 * 109.56078 * 120.07098 * 2 1 3 5 5 N 1.46845 * 109.58033 * 179.05310 * 4 2 1 6 6 C 1.46894 * 111.00479 * 174.18997 * 5 4 2 7 7 C 1.46844 * 111.19978 * 298.29706 * 5 4 2 8 8 C 1.53040 * 109.52696 * 61.73352 * 7 5 4 9 9 H 1.08997 * 109.53471 * 180.85832 * 8 7 5 10 10 C 1.52999 * 109.49824 * 60.76429 * 8 7 5 11 11 C 1.53117 * 109.27765 * 300.82623 * 8 7 5 12 12 O 1.42901 * 109.52227 * 297.68308 * 11 8 7 13 13 C 1.50702 * 109.51952 * 177.55755 * 11 8 7 14 14 H 1.08001 * 119.99598 * 245.01545 * 13 11 8 15 15 C 1.37873 * 120.00135 * 65.29376 * 13 11 8 16 16 N 1.31516 * 120.00278 * 7.55720 * 15 13 11 17 17 Si 1.86801 * 120.00146 * 187.55541 * 15 13 11 18 18 H 1.48504 * 109.46848 * 60.00130 * 17 15 13 19 19 H 1.48497 * 109.47400 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47496 * 300.00242 * 17 15 13 21 21 H 1.09007 * 109.46690 * 186.18139 * 1 2 3 22 22 H 1.08994 * 109.46915 * 306.17948 * 1 2 3 23 23 H 1.08998 * 109.47087 * 66.18182 * 1 2 3 24 24 H 1.09011 * 109.41063 * 59.04208 * 4 2 1 25 25 H 1.08997 * 109.45684 * 299.10445 * 4 2 1 26 26 H 1.08993 * 109.47337 * 184.21088 * 6 5 4 27 27 H 1.08999 * 109.47284 * 304.21556 * 6 5 4 28 28 H 1.09007 * 109.46972 * 64.21826 * 6 5 4 29 29 H 1.09003 * 109.45849 * 301.72070 * 7 5 4 30 30 H 1.08996 * 109.46521 * 181.75454 * 7 5 4 31 31 H 1.08999 * 109.47529 * 300.19539 * 10 8 7 32 32 H 1.08997 * 109.47556 * 60.19831 * 10 8 7 33 33 H 1.09004 * 109.46982 * 180.19699 * 10 8 7 34 34 H 0.96694 * 114.00361 * 179.87996 * 12 11 8 35 35 H 0.96993 * 120.00500 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0424 -0.7226 1.2480 5 7 3.5107 -0.7426 1.2370 6 6 4.0389 -1.3064 2.4864 7 6 4.0230 -1.4742 0.0714 8 6 3.5711 -0.7732 -1.2117 9 1 3.9386 -1.3247 -2.0771 10 6 4.1291 0.6512 -1.2391 11 6 2.0412 -0.7237 -1.2488 12 8 1.5209 -2.0544 -1.2761 13 6 1.5911 0.0185 -2.4807 14 1 1.0659 0.9572 -2.3838 15 6 1.8447 -0.5037 -3.7313 16 7 2.3442 -1.7146 -3.8494 17 14 1.4789 0.5087 -5.2580 18 1 2.2758 1.7613 -5.2239 19 1 1.8382 -0.2732 -6.4682 20 1 0.0326 0.8430 -5.2954 21 1 -0.3633 -1.0218 0.1107 22 1 -0.3633 0.6066 0.8295 23 1 -0.3633 0.4150 -0.9401 24 1 1.6653 -1.7454 1.2548 25 1 1.6929 -0.2008 2.1388 26 1 5.1268 -1.2409 2.4832 27 1 3.6436 -0.7460 3.3336 28 1 3.7381 -2.3508 2.5694 29 1 3.6367 -2.4934 0.0838 30 1 5.1121 -1.4985 0.1078 31 1 3.7625 1.2018 -0.3728 32 1 5.2181 0.6154 -1.2127 33 1 3.8040 1.1512 -2.1515 34 1 0.5552 -2.0987 -1.2985 35 1 2.5223 -2.0821 -4.7292 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260923813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:21 Heat of formation + Delta-G solvation = -71.321856 kcal Electronic energy + Delta-G solvation = -15935.849238 eV Core-core repulsion = 13546.724903 eV Total energy + Delta-G solvation = -2389.124335 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.65230 -36.89200 -34.45695 -33.53897 -33.41261 -28.41360 -27.58950 -27.38314 -25.18821 -22.97321 -22.00087 -19.34059 -18.67133 -16.99763 -16.59348 -16.18125 -15.83273 -15.67246 -15.25951 -14.57368 -14.15900 -13.55037 -13.43588 -13.07917 -12.96877 -12.77269 -12.74908 -12.62546 -12.41307 -12.28429 -12.00110 -11.85572 -11.69640 -11.46510 -11.27214 -10.49615 -10.25575 -9.81400 -9.08337 -7.93672 -6.14422 1.41437 1.44205 1.49480 2.46463 3.16999 3.27242 4.04533 4.13334 4.27945 4.39820 4.47848 4.66153 4.67754 4.71216 4.75416 4.87805 4.92988 4.95082 5.02798 5.05737 5.21700 5.25529 5.40010 5.50529 5.56628 5.65997 5.76788 5.92571 6.03868 6.27147 6.35210 6.40739 6.88765 7.49250 7.73858 9.04352 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040426 B = 0.011998 C = 0.011007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.464600 B = 2333.103956 C = 2543.157834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.109 4.109 3 H 0.064 0.936 4 C 0.072 3.928 5 N -0.544 5.544 6 C 0.026 3.974 7 C 0.074 3.926 8 C -0.065 4.065 9 H 0.047 0.953 10 C -0.108 4.108 11 C 0.257 3.743 12 O -0.572 6.572 13 C -0.553 4.553 14 H 0.050 0.950 15 C 0.037 3.963 16 N -0.884 5.884 17 Si 0.931 3.069 18 H -0.274 1.274 19 H -0.291 1.291 20 H -0.273 1.273 21 H 0.048 0.952 22 H 0.063 0.937 23 H 0.050 0.950 24 H 0.019 0.981 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.017 0.983 29 H 0.010 0.990 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.035 0.965 34 H 0.349 0.651 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 2.506 9.220 9.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.128 4.128 3 H 0.082 0.918 4 C -0.056 4.056 5 N -0.268 5.268 6 C -0.122 4.122 7 C -0.054 4.054 8 C -0.085 4.085 9 H 0.065 0.935 10 C -0.165 4.165 11 C 0.218 3.782 12 O -0.376 6.376 13 C -0.591 4.591 14 H 0.068 0.932 15 C -0.165 4.165 16 N -0.521 5.521 17 Si 0.757 3.243 18 H -0.199 1.199 19 H -0.217 1.217 20 H -0.199 1.199 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.069 0.931 24 H 0.037 0.963 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.035 0.965 29 H 0.028 0.972 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.193 0.807 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.358 2.699 9.083 9.572 hybrid contribution -1.003 -0.449 -1.290 1.695 sum 0.355 2.250 7.793 8.119 Atomic orbital electron populations 1.21637 0.94727 1.01143 1.01479 1.21737 0.96015 0.99613 0.95418 0.91809 1.22026 0.87032 0.98241 0.98261 1.61941 1.08489 1.53806 1.02602 1.22402 1.00997 0.97160 0.91605 1.21971 0.98372 0.94097 0.90985 1.20863 0.96495 0.96265 0.94857 0.93506 1.21445 0.98281 0.95934 1.00846 1.18718 0.89851 0.79517 0.90121 1.86437 1.23238 1.30852 1.97056 1.21767 1.38235 1.07030 0.92081 0.93170 1.25579 0.94798 0.95063 1.01054 1.70249 1.43728 1.15127 1.22965 0.86071 0.78657 0.79371 0.80177 1.19899 1.21736 1.19875 0.93261 0.91834 0.93113 0.96298 0.90078 0.90737 0.89994 0.96483 0.97213 0.91468 0.92125 0.93831 0.94539 0.80695 0.93848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 8.55 71.98 0.62 -4.00 16 2 C -0.11 -4.29 1.82 -10.74 -0.02 -4.31 16 3 H 0.06 2.60 6.59 -2.39 -0.02 2.59 16 4 C 0.07 2.53 4.61 86.33 0.40 2.93 16 5 N -0.54 -18.94 4.19 -922.60 -3.87 -22.81 16 6 C 0.03 0.71 9.59 127.69 1.22 1.93 16 7 C 0.07 2.98 4.77 86.33 0.41 3.39 16 8 C -0.07 -3.06 2.31 -10.74 -0.02 -3.08 16 9 H 0.05 2.57 6.88 -2.39 -0.02 2.55 16 10 C -0.11 -4.56 8.47 71.98 0.61 -3.95 16 11 C 0.26 12.17 0.11 -11.46 0.00 12.17 16 12 O -0.57 -28.98 10.70 -148.98 -1.59 -30.57 16 13 C -0.55 -28.79 5.91 25.60 0.15 -28.64 16 14 H 0.05 2.60 7.12 -2.91 -0.02 2.58 16 15 C 0.04 2.02 5.21 84.65 0.44 2.47 16 16 N -0.88 -50.88 11.25 21.45 0.24 -50.63 16 17 Si 0.93 43.06 29.54 68.60 2.03 45.08 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H 0.05 1.65 7.08 -2.38 -0.02 1.64 16 22 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.05 1.94 6.72 -2.39 -0.02 1.92 16 24 H 0.02 0.71 7.76 -2.38 -0.02 0.69 16 25 H 0.08 2.41 8.09 -2.39 -0.02 2.39 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.08 1.85 8.09 -2.39 -0.02 1.83 16 28 H 0.02 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.01 0.43 7.76 -2.39 -0.02 0.41 16 30 H 0.07 2.48 8.12 -2.39 -0.02 2.46 16 31 H 0.06 2.42 6.02 -2.39 -0.01 2.41 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.04 1.66 7.15 -2.39 -0.02 1.64 16 34 H 0.35 16.44 7.42 -74.06 -0.55 15.89 16 35 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -59.26 264.04 1.12 -58.13 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.51 Total: 21.89 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 3.81 Total: -21.09 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -3.63 Total: -73.44 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -1.59 Total: -30.57 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -59.26 1.12 -58.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260923813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.187 kcal (2) G-P(sol) polarization free energy of solvation -59.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds