Wall clock time and date at job start Mon Mar 30 2020 20:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 5 5 H 1.07994 * 120.00496 * 239.99942 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00100 * 4 2 1 7 7 N 1.31518 * 120.00216 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00016 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47172 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.47304 * 120.00302 * 8 6 4 11 11 H 1.48502 * 109.47432 * 240.00422 * 8 6 4 12 12 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 13 13 C 1.52993 * 109.47522 * 295.00072 * 12 2 1 14 14 N 1.46905 * 109.47258 * 180.02562 * 13 12 2 15 15 C 1.47013 * 110.99693 * 293.63291 * 14 13 12 16 16 C 1.53102 * 109.25515 * 177.60646 * 15 14 13 17 17 O 1.43016 * 109.25718 * 56.85047 * 16 15 14 18 18 C 1.43016 * 113.73874 * 301.32680 * 17 16 15 19 19 C 1.47007 * 110.99986 * 169.99877 * 14 13 12 20 20 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 21 21 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 23 23 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 24 24 H 1.09002 * 109.47016 * 55.00506 * 12 2 1 25 25 H 1.09000 * 109.46709 * 175.00070 * 12 2 1 26 26 H 1.09002 * 109.47330 * 300.00242 * 13 12 2 27 27 H 1.09000 * 109.47130 * 60.00256 * 13 12 2 28 28 H 1.08997 * 109.50948 * 297.54403 * 15 14 13 29 29 H 1.09001 * 109.50468 * 57.67907 * 15 14 13 30 30 H 1.09003 * 109.50461 * 296.91331 * 16 15 14 31 31 H 1.08997 * 109.53893 * 176.80704 * 16 15 14 32 32 H 1.08998 * 109.50867 * 298.73706 * 18 17 16 33 33 H 1.08993 * 109.54046 * 178.62566 * 18 17 16 34 34 H 1.08998 * 109.51549 * 302.32705 * 19 14 13 35 35 H 1.09000 * 109.50820 * 62.41764 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 3.1475 -2.2864 -3.6037 10 1 1.1679 -1.5866 -4.8164 11 1 3.1474 -0.1859 -4.8160 12 6 2.0399 -0.7212 1.2493 13 6 1.6352 0.0689 2.4953 14 7 2.1253 -0.6233 3.6948 15 6 1.4461 -1.9150 3.8720 16 6 2.0277 -2.6275 5.0960 17 8 1.8922 -1.7828 6.2421 18 6 2.5423 -0.5164 6.1041 19 6 1.9660 0.2174 4.8902 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7090 1.1614 -3.4844 24 1 1.6053 -1.7198 1.2952 25 1 3.1263 -0.7994 1.2057 26 1 2.0698 1.0675 2.4494 27 1 0.5488 0.1472 2.5389 28 1 0.3794 -1.7480 4.0208 29 1 1.5987 -2.5310 2.9858 30 1 3.0826 -2.8424 4.9249 31 1 1.4891 -3.5598 5.2652 32 1 3.6121 -0.6700 5.9623 33 1 2.3758 0.0786 7.0019 34 1 2.4978 1.1580 4.7474 35 1 0.9075 0.4191 5.0549 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260963704.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:29 Heat of formation + Delta-G solvation = -55.690150 kcal Electronic energy + Delta-G solvation = -14635.390814 eV Core-core repulsion = 12246.944320 eV Total energy + Delta-G solvation = -2388.446494 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42911 -36.35345 -34.35708 -31.61018 -31.07168 -28.43758 -25.67841 -25.14643 -23.92533 -22.05874 -20.26712 -19.00049 -16.63357 -16.05646 -15.93602 -15.04083 -14.95825 -14.72091 -14.35798 -13.76366 -13.36411 -12.60349 -12.43138 -11.91371 -11.72648 -11.51174 -11.32351 -10.99786 -10.86784 -10.55010 -10.46971 -10.30159 -10.07831 -9.66957 -9.50713 -9.14847 -8.75243 -8.30039 -8.08933 -5.95321 -4.01449 3.31052 3.39010 3.43155 3.83140 4.07363 4.46821 4.95063 5.10858 5.13439 5.21168 5.34275 5.35393 5.59067 5.62849 5.76488 5.83750 5.92007 5.97539 6.08176 6.32456 6.65515 6.68818 6.88344 7.03293 7.10642 7.19144 7.30633 7.31921 7.48981 7.76872 8.02065 8.20057 8.50153 9.03046 9.63368 11.10721 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.061638 B = 0.005969 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.156652 B = 4689.521103 C = 4878.037106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.042 3.958 3 H 0.024 0.976 4 C -0.509 4.509 5 H 0.055 0.945 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.890 3.110 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.099 4.099 13 C 0.055 3.945 14 N -0.538 5.538 15 C 0.015 3.985 16 C 0.064 3.936 17 O -0.391 6.391 18 C 0.065 3.935 19 C 0.016 3.984 20 H 0.006 0.994 21 H 0.080 0.920 22 H 0.022 0.978 23 H 0.258 0.742 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.039 0.961 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.333 -2.805 13.651 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.023 3.977 3 H 0.043 0.957 4 C -0.548 4.548 5 H 0.073 0.927 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.718 3.282 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.137 4.137 13 C -0.072 4.072 14 N -0.263 5.263 15 C -0.113 4.113 16 C -0.013 4.013 17 O -0.309 6.309 18 C -0.012 4.012 19 C -0.113 4.113 20 H 0.025 0.975 21 H 0.098 0.902 22 H 0.041 0.959 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.657 -2.837 13.617 14.008 hybrid contribution -0.497 -0.118 -1.129 1.240 sum 1.160 -2.955 12.488 12.885 Atomic orbital electron populations 1.21845 0.99103 0.98680 0.99812 1.18653 0.92381 0.95799 0.90864 0.95750 1.21244 1.30681 1.12182 0.90648 0.92714 1.24977 0.95184 0.95025 0.98979 1.69904 1.37102 1.23085 1.23059 0.86573 0.78623 0.79741 0.83279 1.19814 1.21123 1.21074 1.21671 1.00448 0.98248 0.93355 1.22369 0.97587 0.97924 0.89330 1.62309 1.57297 1.03845 1.02882 1.22807 0.96431 0.92573 0.99467 1.22688 1.00871 0.92970 0.84767 1.87936 1.76360 1.27613 1.39039 1.22642 0.96608 0.84568 0.97402 1.22761 0.99858 0.97352 0.91296 0.97543 0.90159 0.95861 0.93190 0.93558 0.92688 0.91255 0.94760 0.94313 0.88920 0.92346 0.88748 0.92400 0.88877 0.89836 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.73 37.16 0.32 -3.01 16 2 C 0.04 1.05 2.30 -91.77 -0.21 0.84 16 3 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.51 -14.14 8.56 -34.44 -0.29 -14.44 16 5 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.86 11.32 55.43 0.63 -25.23 16 8 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 C -0.10 -2.07 4.56 -26.74 -0.12 -2.20 16 13 C 0.05 0.98 4.71 -3.82 -0.02 0.96 16 14 N -0.54 -8.45 4.73 -234.31 -1.11 -9.56 16 15 C 0.02 0.22 5.44 -3.71 -0.02 0.20 16 16 C 0.06 0.80 7.01 37.21 0.26 1.06 16 17 O -0.39 -5.31 10.83 -35.23 -0.38 -5.69 16 18 C 0.06 0.76 7.01 37.21 0.26 1.02 16 19 C 0.02 0.21 5.64 -3.71 -0.02 0.19 16 20 H 0.01 0.12 6.56 -51.93 -0.34 -0.22 16 21 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 22 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.05 0.95 6.52 -51.93 -0.34 0.61 16 25 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 27 H 0.03 0.63 6.54 -51.93 -0.34 0.29 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 1.38 6.38 -51.93 -0.33 1.05 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 274.52 15.07 4.14 4.14 Total: -1.00 -29.33 274.52 -7.53 -36.86 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.85 Total: -3.17 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 0.06 Total: -13.80 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: -0.48 Total: -34.79 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.38 Total: -5.69 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.33 -7.53 -36.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963704.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.830 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds