Wall clock time and date at job start Mon Mar 30 2020 20:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46804 * 2 1 4 4 C 1.50700 * 109.47289 * 240.00270 * 2 1 3 5 5 H 1.07999 * 119.99787 * 239.99741 * 4 2 1 6 6 C 1.37875 * 120.00067 * 59.99709 * 4 2 1 7 7 N 1.31509 * 120.00047 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99958 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47056 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47297 * 119.99857 * 8 6 4 11 11 H 1.48492 * 109.47439 * 240.00059 * 8 6 4 12 12 N 1.46895 * 109.47204 * 119.99975 * 2 1 3 13 13 C 1.46900 * 111.00037 * 275.00090 * 12 2 1 14 14 H 1.09003 * 112.85290 * 23.80327 * 13 12 2 15 15 C 1.53779 * 113.69049 * 252.53571 * 13 12 2 16 16 C 1.53785 * 87.08093 * 220.00567 * 15 13 12 17 17 H 1.09002 * 113.61570 * 270.88522 * 16 15 13 18 18 O 1.42901 * 113.69063 * 139.99216 * 16 15 13 19 19 C 1.53781 * 87.08241 * 25.43228 * 16 15 13 20 20 C 1.53003 * 113.61438 * 89.11210 * 19 16 15 21 21 C 1.52992 * 113.61881 * 220.01869 * 19 16 15 22 22 H 1.08995 * 109.47193 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47435 * 299.99816 * 1 2 3 24 24 H 1.09007 * 109.47338 * 60.00098 * 1 2 3 25 25 H 0.97005 * 119.99900 * 179.97438 * 7 6 4 26 26 H 1.00901 * 110.99841 * 38.95481 * 12 2 1 27 27 H 1.09003 * 113.61775 * 105.46444 * 15 13 12 28 28 H 1.08996 * 113.61960 * 334.55171 * 15 13 12 29 29 H 0.96698 * 114.00171 * 80.93851 * 18 16 15 30 30 H 1.08996 * 109.46999 * 79.50522 * 20 19 16 31 31 H 1.08996 * 109.47070 * 199.50803 * 20 19 16 32 32 H 1.09004 * 109.46910 * 319.50783 * 20 19 16 33 33 H 1.09003 * 109.47239 * 40.49145 * 21 19 16 34 34 H 1.09003 * 109.47452 * 160.49163 * 21 19 16 35 35 H 1.09000 * 109.47044 * 280.49840 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1455 -2.2876 -3.6038 10 1 1.1661 -1.5867 -4.8161 11 1 3.1466 -0.1873 -4.8165 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3468 14 1 1.4067 1.0722 2.2482 15 6 3.5144 0.6175 2.7446 16 6 3.0583 0.4928 4.2079 17 1 2.6493 1.4162 4.6181 18 8 4.0309 -0.1113 5.0630 19 6 1.9844 -0.4876 3.7074 20 6 2.4522 -1.9440 3.6734 21 6 0.6280 -0.3136 4.3933 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7095 1.1618 -3.4844 26 1 1.4495 -1.4979 1.4100 27 1 3.7832 1.6338 2.4563 28 1 4.2660 -0.1179 2.4574 29 1 4.7221 0.4950 5.3624 30 1 2.4048 -2.3643 4.6780 31 1 1.8063 -2.5176 3.0087 32 1 3.4787 -1.9875 3.3094 33 1 0.4173 0.7486 4.5176 34 1 -0.1501 -0.7691 3.7807 35 1 0.6504 -0.7962 5.3704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168224888.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:25 Heat of formation + Delta-G solvation = -37.466749 kcal Electronic energy + Delta-G solvation = -14981.221690 eV Core-core repulsion = 12593.565422 eV Total energy + Delta-G solvation = -2387.656268 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.81501 -35.74764 -34.35272 -31.82355 -30.15227 -27.79571 -27.01836 -25.10966 -22.88204 -22.07970 -20.03095 -18.02375 -17.26974 -16.10920 -14.96623 -14.76474 -14.47824 -14.36185 -13.39359 -12.91523 -12.51570 -12.49580 -12.20378 -11.84832 -11.70304 -11.47062 -11.30227 -10.97400 -10.91951 -10.65464 -10.39514 -10.17433 -10.08418 -9.98778 -9.72370 -9.29800 -8.88644 -8.33693 -7.18976 -5.95880 -3.98572 3.33181 3.40837 3.46561 4.35171 4.47850 4.78330 4.86875 5.10690 5.28900 5.35931 5.50601 5.61068 5.70398 5.87064 5.92007 6.09120 6.15560 6.26711 6.33611 6.35548 6.57734 6.71544 6.76518 6.84809 6.88246 7.14428 7.43369 7.77013 7.82455 7.94094 8.32983 8.59663 8.67630 9.09489 9.66813 11.11333 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.047198 B = 0.007505 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.102464 B = 3729.926229 C = 3897.529629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.492 4.492 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.666 5.666 13 C 0.076 3.924 14 H 0.064 0.936 15 C -0.153 4.153 16 C 0.080 3.920 17 H 0.073 0.927 18 O -0.557 6.557 19 C -0.081 4.081 20 C -0.106 4.106 21 C -0.137 4.137 22 H 0.027 0.973 23 H 0.004 0.996 24 H 0.088 0.912 25 H 0.258 0.742 26 H 0.327 0.673 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.370 0.630 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 -0.242 12.471 12.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.212 1.212 12 N -0.297 5.297 13 C -0.036 4.036 14 H 0.082 0.918 15 C -0.191 4.191 16 C 0.020 3.980 17 H 0.091 0.909 18 O -0.362 6.362 19 C -0.081 4.081 20 C -0.163 4.163 21 C -0.194 4.194 22 H 0.046 0.954 23 H 0.023 0.977 24 H 0.106 0.894 25 H 0.068 0.932 26 H 0.146 0.854 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.216 0.784 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.921 -0.589 12.043 12.209 hybrid contribution -0.431 0.392 -0.661 0.881 sum 1.490 -0.197 11.381 11.480 Atomic orbital electron populations 1.22444 1.00828 0.99123 1.00387 1.19227 0.89462 0.94381 0.86753 0.94978 1.21207 1.29919 1.12324 0.89625 0.91916 1.24953 0.95404 0.95233 0.99040 1.69896 1.37546 1.23287 1.23139 0.86469 0.78489 0.79678 0.82926 1.19744 1.21253 1.21194 1.60902 1.57540 1.08507 1.02708 1.22723 0.95777 0.95640 0.89451 0.91818 1.23711 0.99121 1.01536 0.94779 1.23440 0.90105 0.95314 0.89108 0.90917 1.86520 1.40607 1.40667 1.68370 1.22292 0.93581 0.96485 0.95775 1.21214 1.01914 0.92817 1.00405 1.21759 0.96359 1.01235 1.00087 0.95411 0.97711 0.89355 0.93202 0.85394 0.92265 0.88708 0.78366 0.93342 0.92602 0.91619 0.92916 0.92331 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.93 37.16 0.33 -3.75 16 2 C 0.21 5.30 2.42 -68.87 -0.17 5.13 16 3 H 0.03 0.90 7.84 -51.93 -0.41 0.49 16 4 C -0.49 -13.74 8.84 -34.44 -0.30 -14.05 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.94 11.32 55.43 0.63 -25.31 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 N -0.67 -14.17 5.80 -100.10 -0.58 -14.75 16 13 C 0.08 1.36 3.29 -66.90 -0.22 1.14 16 14 H 0.06 1.21 7.45 -51.93 -0.39 0.82 16 15 C -0.15 -2.51 7.37 -25.92 -0.19 -2.70 16 16 C 0.08 1.11 4.63 -25.92 -0.12 0.99 16 17 H 0.07 0.91 8.01 -51.93 -0.42 0.49 16 18 O -0.56 -7.34 12.82 -35.23 -0.45 -7.79 16 19 C -0.08 -1.22 1.26 -153.70 -0.19 -1.42 16 20 C -0.11 -1.62 7.73 37.16 0.29 -1.33 16 21 C -0.14 -1.84 9.17 37.15 0.34 -1.50 16 22 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 23 H 0.00 0.09 7.74 -51.93 -0.40 -0.32 16 24 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.33 6.70 6.74 -39.29 -0.26 6.44 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.69 7.63 -51.93 -0.40 1.29 16 29 H 0.37 3.22 9.12 45.56 0.42 3.63 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.85 6.86 -51.93 -0.36 0.49 16 32 H 0.06 1.08 7.25 -51.93 -0.38 0.71 16 33 H 0.05 0.66 8.01 -51.93 -0.42 0.25 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 279.26 15.07 4.21 4.21 Total: -1.00 -29.51 279.26 -6.53 -36.03 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -4.98 Total: 6.98 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -0.33 Total: -16.07 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.05 Total: -40.06 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.45 Total: -7.79 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.51 -6.53 -36.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168224888.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.432 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds