Wall clock time and date at job start Mon Mar 30 2020 20:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46804 * 2 1 4 4 C 1.50700 * 109.47289 * 240.00270 * 2 1 3 5 5 H 1.07999 * 119.99787 * 239.99741 * 4 2 1 6 6 C 1.37875 * 120.00067 * 59.99709 * 4 2 1 7 7 N 1.31509 * 120.00047 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99958 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47056 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47297 * 119.99857 * 8 6 4 11 11 H 1.48492 * 109.47439 * 240.00059 * 8 6 4 12 12 N 1.46895 * 109.47204 * 119.99975 * 2 1 3 13 13 C 1.46900 * 111.00037 * 275.00090 * 12 2 1 14 14 H 1.09003 * 112.85290 * 23.80327 * 13 12 2 15 15 C 1.53779 * 113.69049 * 252.53571 * 13 12 2 16 16 C 1.53785 * 87.08093 * 220.00567 * 15 13 12 17 17 H 1.09002 * 113.61570 * 270.88522 * 16 15 13 18 18 O 1.42901 * 113.69063 * 139.99216 * 16 15 13 19 19 C 1.53781 * 87.08241 * 25.43228 * 16 15 13 20 20 C 1.53003 * 113.61438 * 89.11210 * 19 16 15 21 21 C 1.52992 * 113.61881 * 220.01869 * 19 16 15 22 22 H 1.08995 * 109.47193 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47435 * 299.99816 * 1 2 3 24 24 H 1.09007 * 109.47338 * 60.00098 * 1 2 3 25 25 H 0.97005 * 119.99900 * 179.97438 * 7 6 4 26 26 H 1.00901 * 110.99841 * 38.95481 * 12 2 1 27 27 H 1.09003 * 113.61775 * 105.46444 * 15 13 12 28 28 H 1.08996 * 113.61960 * 334.55171 * 15 13 12 29 29 H 0.96698 * 114.00171 * 80.93851 * 18 16 15 30 30 H 1.08996 * 109.46999 * 79.50522 * 20 19 16 31 31 H 1.08996 * 109.47070 * 199.50803 * 20 19 16 32 32 H 1.09004 * 109.46910 * 319.50783 * 20 19 16 33 33 H 1.09003 * 109.47239 * 40.49145 * 21 19 16 34 34 H 1.09003 * 109.47452 * 160.49163 * 21 19 16 35 35 H 1.09000 * 109.47044 * 280.49840 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1455 -2.2876 -3.6038 10 1 1.1661 -1.5867 -4.8161 11 1 3.1466 -0.1873 -4.8165 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3468 14 1 1.4067 1.0722 2.2482 15 6 3.5144 0.6175 2.7446 16 6 3.0583 0.4928 4.2079 17 1 2.6493 1.4162 4.6181 18 8 4.0309 -0.1113 5.0630 19 6 1.9844 -0.4876 3.7074 20 6 2.4522 -1.9440 3.6734 21 6 0.6280 -0.3136 4.3933 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7095 1.1618 -3.4844 26 1 1.4495 -1.4979 1.4100 27 1 3.7832 1.6338 2.4563 28 1 4.2660 -0.1179 2.4574 29 1 4.7221 0.4950 5.3624 30 1 2.4048 -2.3643 4.6780 31 1 1.8063 -2.5176 3.0087 32 1 3.4787 -1.9875 3.3094 33 1 0.4173 0.7486 4.5176 34 1 -0.1501 -0.7691 3.7807 35 1 0.6504 -0.7962 5.3704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168224888.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:24 Heat of formation + Delta-G solvation = -58.828100 kcal Electronic energy + Delta-G solvation = -14982.147988 eV Core-core repulsion = 12593.565422 eV Total energy + Delta-G solvation = -2388.582566 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.09049 -37.28358 -35.84206 -33.77277 -31.41457 -29.54598 -28.23602 -27.22871 -24.25187 -23.40676 -21.93067 -19.42586 -18.43343 -18.03168 -16.82284 -16.10794 -15.91197 -15.80672 -14.94670 -14.45850 -14.06300 -13.82855 -13.82209 -13.23680 -13.11962 -12.90892 -12.85316 -12.79914 -12.49783 -12.39216 -12.17289 -11.96605 -11.77674 -11.25522 -11.21901 -10.85166 -10.49371 -10.48232 -8.91522 -8.09621 -6.20308 1.41026 1.42798 1.55271 2.43990 3.18662 3.28941 3.52353 3.57903 3.97278 4.00282 4.12562 4.36109 4.53770 4.61244 4.73750 4.80594 4.84039 4.87713 5.01374 5.03609 5.09821 5.15338 5.17988 5.26637 5.44424 5.53931 5.62330 5.70294 5.87289 6.30464 6.69674 6.87564 6.96354 7.00427 7.49973 8.96183 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.047198 B = 0.007505 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.102464 B = 3729.926229 C = 3897.529629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H -0.001 1.001 4 C -0.513 4.513 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.282 1.282 12 N -0.669 5.669 13 C 0.062 3.938 14 H 0.055 0.945 15 C -0.156 4.156 16 C 0.100 3.900 17 H 0.097 0.903 18 O -0.566 6.566 19 C -0.078 4.078 20 C -0.102 4.102 21 C -0.134 4.134 22 H 0.030 0.970 23 H 0.025 0.975 24 H 0.060 0.940 25 H 0.260 0.740 26 H 0.331 0.669 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.392 0.608 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.814 -0.561 13.652 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.108 3.892 3 H 0.017 0.983 4 C -0.552 4.552 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.208 1.208 12 N -0.299 5.299 13 C -0.049 4.049 14 H 0.073 0.927 15 C -0.195 4.195 16 C 0.040 3.960 17 H 0.115 0.885 18 O -0.373 6.373 19 C -0.078 4.078 20 C -0.160 4.160 21 C -0.191 4.191 22 H 0.050 0.950 23 H 0.044 0.956 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.150 0.850 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.241 0.759 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.037 -0.903 13.249 13.435 hybrid contribution -0.419 0.509 -0.987 1.187 sum 1.617 -0.394 12.262 12.375 Atomic orbital electron populations 1.22242 1.00053 0.99140 0.99994 1.18954 0.89909 0.92529 0.87817 0.98321 1.21492 1.30177 1.12333 0.91168 0.92901 1.25713 0.95523 0.95908 1.01872 1.70016 1.38195 1.24298 1.23857 0.85481 0.78076 0.78591 0.79300 1.19421 1.20524 1.20773 1.60785 1.57229 1.09026 1.02879 1.22851 0.96854 0.95358 0.89861 0.92708 1.23696 0.97619 1.00948 0.97234 1.23234 0.89506 0.95586 0.87659 0.88516 1.86469 1.41242 1.41812 1.67821 1.22260 0.95349 0.96356 0.93878 1.21164 1.00696 0.93089 1.01016 1.21738 0.94768 1.02119 1.00487 0.95043 0.95630 0.92078 0.93052 0.85015 0.92187 0.90479 0.75887 0.91884 0.93061 0.93329 0.91915 0.92911 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.54 8.93 71.98 0.64 -6.90 16 2 C 0.22 11.15 2.42 44.17 0.11 11.26 16 3 H 0.00 -0.07 7.84 -2.38 -0.02 -0.09 16 4 C -0.51 -29.08 8.84 25.60 0.23 -28.85 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.43 5.30 84.65 0.45 0.88 16 7 N -0.92 -53.90 11.32 21.45 0.24 -53.66 16 8 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 N -0.67 -28.66 5.80 -470.61 -2.73 -31.39 16 13 C 0.06 2.19 3.29 45.44 0.15 2.34 16 14 H 0.06 2.05 7.45 -2.39 -0.02 2.04 16 15 C -0.16 -5.02 7.37 31.12 0.23 -4.80 16 16 C 0.10 2.54 4.63 31.12 0.14 2.68 16 17 H 0.10 2.06 8.01 -2.39 -0.02 2.04 16 18 O -0.57 -13.29 12.82 -148.98 -1.91 -15.20 16 19 C -0.08 -2.21 1.26 -51.65 -0.06 -2.28 16 20 C -0.10 -2.98 7.73 71.98 0.56 -2.42 16 21 C -0.13 -3.23 9.17 71.98 0.66 -2.57 16 22 H 0.03 1.45 8.13 -2.39 -0.02 1.43 16 23 H 0.02 1.09 7.74 -2.39 -0.02 1.07 16 24 H 0.06 3.32 6.07 -2.38 -0.01 3.31 16 25 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 26 H 0.33 13.54 6.74 -89.69 -0.60 12.94 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.08 2.75 7.63 -2.39 -0.02 2.73 16 29 H 0.39 5.58 9.12 -74.06 -0.68 4.90 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.51 6.86 -2.39 -0.02 1.49 16 32 H 0.05 1.56 7.25 -2.38 -0.02 1.55 16 33 H 0.06 1.39 8.01 -2.39 -0.02 1.37 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -62.75 279.26 0.52 -62.23 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -0.21 Total: 21.94 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 3.10 Total: -30.66 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -2.49 Total: -85.05 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -1.91 Total: -15.20 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -62.75 0.52 -62.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168224888.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.399 kcal (2) G-P(sol) polarization free energy of solvation -62.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds