Wall clock time and date at job start Mon Mar 30 2020 20:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00294 * 2 1 4 4 H 1.08999 * 109.46503 * 29.99717 * 3 2 1 5 5 C 1.53006 * 109.46802 * 270.00269 * 3 2 1 6 6 C 1.52991 * 109.47287 * 150.00313 * 3 2 1 7 7 N 1.46906 * 109.47267 * 299.99993 * 6 3 2 8 8 C 1.46893 * 111.00098 * 179.97438 * 7 6 3 9 9 C 1.53002 * 109.47250 * 185.37571 * 8 7 6 10 10 C 1.50701 * 115.55139 * 294.80834 * 9 8 7 11 11 H 1.07998 * 119.99931 * 95.20118 * 10 9 8 12 12 C 1.37881 * 119.99675 * 274.92507 * 10 9 8 13 13 N 1.31509 * 120.00118 * 355.41870 * 12 10 9 14 14 Si 1.86797 * 119.99851 * 175.42112 * 12 10 9 15 15 H 1.48500 * 109.47305 * 59.99777 * 14 12 10 16 16 H 1.48502 * 109.46877 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47169 * 299.99984 * 14 12 10 18 18 C 1.53005 * 117.49771 * 80.47079 * 9 8 7 19 19 C 1.52998 * 117.50158 * 149.12935 * 9 8 7 20 20 H 1.08996 * 109.47187 * 59.99606 * 1 2 3 21 21 H 1.08996 * 109.47085 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46772 * 299.99890 * 1 2 3 23 23 H 1.08996 * 109.46732 * 179.97438 * 5 3 2 24 24 H 1.08995 * 109.46901 * 299.99778 * 5 3 2 25 25 H 1.09000 * 109.47073 * 59.99795 * 5 3 2 26 26 H 1.08998 * 109.47269 * 180.02562 * 6 3 2 27 27 H 1.08995 * 109.47367 * 59.99639 * 6 3 2 28 28 H 1.00901 * 110.99671 * 303.95659 * 7 6 3 29 29 H 1.09004 * 109.46845 * 65.38026 * 8 7 6 30 30 H 1.08997 * 109.47456 * 305.38043 * 8 7 6 31 31 H 0.96998 * 120.00611 * 185.00609 * 13 12 10 32 32 H 1.08998 * 117.50096 * 215.00821 * 18 9 8 33 33 H 1.08999 * 117.49296 * 0.02838 * 18 9 8 34 34 H 1.09004 * 117.49634 * 359.97438 * 19 9 8 35 35 H 1.08994 * 117.49846 * 144.97788 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7713 -1.4426 6 6 3.3590 1.2632 0.7211 7 7 3.1599 0.8158 2.1062 8 6 4.4365 0.7624 2.8308 9 6 4.2090 0.1672 4.2218 10 6 3.3485 0.9882 5.1473 11 1 2.2913 0.7821 5.2265 12 6 3.9120 1.9987 5.8972 13 7 5.2131 2.1879 5.8736 14 14 2.8271 3.0991 6.9468 15 1 2.1025 2.2726 7.9454 16 1 3.6698 4.0990 7.6505 17 1 1.8465 3.8001 6.0794 18 6 4.1105 -1.3558 4.3310 19 6 5.3563 -0.6301 4.8454 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 2.6607 2.7672 -1.4426 24 1 2.8829 1.0774 -1.9564 25 1 1.2568 1.8014 -1.9564 26 1 3.8021 2.2590 0.7215 27 1 4.0241 0.5693 0.2073 28 1 2.4963 1.4062 2.5850 29 1 4.8412 1.7699 2.9285 30 1 5.1413 0.1396 2.2799 31 1 5.6177 2.8502 6.4555 32 1 3.4234 -1.7638 5.0722 33 1 4.2083 -1.9335 3.4119 34 1 6.2731 -0.7309 4.2645 35 1 5.4890 -0.5605 5.9250 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224195334.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:42 Heat of formation + Delta-G solvation = -48.043326 kcal Electronic energy + Delta-G solvation = -14598.840253 eV Core-core repulsion = 12210.725350 eV Total energy + Delta-G solvation = -2388.114903 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.42642 -38.51329 -35.75661 -33.94456 -32.39269 -28.21693 -27.49628 -26.96959 -24.33252 -22.78610 -22.17040 -20.88723 -17.95495 -17.75432 -16.66335 -16.54474 -16.11721 -15.69837 -15.47655 -15.02689 -14.49299 -14.08156 -13.58635 -13.38896 -13.09098 -13.07016 -12.84996 -12.78192 -12.65543 -12.30967 -12.17964 -11.96344 -11.53326 -11.20797 -10.80954 -10.45064 -10.32438 -9.90542 -9.05638 -8.06230 -6.19194 1.42883 1.43125 1.50905 2.43853 2.96979 3.20288 3.28798 3.75275 4.01629 4.22951 4.34001 4.39213 4.55244 4.59825 4.63672 4.68478 4.73796 4.79808 4.85725 4.94700 5.01335 5.04095 5.05846 5.09676 5.30798 5.31479 5.65710 5.71775 5.82150 6.35447 6.44585 6.50024 6.68513 6.90212 7.48774 9.00345 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028748 B = 0.008177 C = 0.007435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.731980 B = 3423.584119 C = 3764.817436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.395 6.395 3 C 0.089 3.911 4 H 0.059 0.941 5 C -0.165 4.165 6 C 0.058 3.942 7 N -0.675 5.675 8 C 0.120 3.880 9 C 0.024 3.976 10 C -0.503 4.503 11 H 0.052 0.948 12 C 0.024 3.976 13 N -0.909 5.909 14 Si 0.949 3.051 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.269 1.269 18 C -0.180 4.180 19 C -0.161 4.161 20 H 0.053 0.947 21 H 0.090 0.910 22 H 0.037 0.963 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.337 0.663 29 H 0.002 0.998 30 H 0.045 0.955 31 H 0.259 0.741 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.539 0.143 -11.519 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.314 6.314 3 C 0.031 3.969 4 H 0.077 0.923 5 C -0.223 4.223 6 C -0.071 4.071 7 N -0.305 5.305 8 C -0.009 4.009 9 C 0.024 3.976 10 C -0.541 4.541 11 H 0.070 0.930 12 C -0.176 4.176 13 N -0.547 5.547 14 Si 0.775 3.225 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.194 1.194 18 C -0.217 4.217 19 C -0.199 4.199 20 H 0.071 0.929 21 H 0.108 0.892 22 H 0.055 0.945 23 H 0.094 0.906 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.155 0.845 29 H 0.020 0.980 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.276 -0.529 -11.665 13.256 hybrid contribution -0.157 1.716 1.072 2.029 sum -6.433 1.187 -10.593 12.450 Atomic orbital electron populations 1.22861 0.80529 1.03235 1.00115 1.87959 1.20457 1.27895 1.95093 1.22160 0.93819 0.84788 0.96097 0.92293 1.22190 1.02970 1.01991 0.95128 1.22142 0.96795 0.98432 0.89736 1.60319 1.11172 1.57252 1.01757 1.21184 0.89912 0.96737 0.93068 1.18915 0.97344 0.88771 0.92609 1.20661 0.94189 1.15161 1.24114 0.93016 1.25687 0.96015 0.98150 0.97793 1.70110 1.10751 1.35011 1.38856 0.85762 0.78930 0.78774 0.79039 1.20058 1.21308 1.19352 1.22817 1.00649 0.97192 1.01089 1.22406 0.91835 1.07011 0.98688 0.92870 0.89168 0.94463 0.90556 0.91937 0.91187 0.94237 0.91298 0.84518 0.97981 0.93608 0.93239 0.91170 0.90002 0.91277 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.82 113.37 1.23 1.89 16 2 O -0.39 -12.03 10.21 -148.98 -1.52 -13.55 16 3 C 0.09 2.44 2.93 30.59 0.09 2.53 16 4 H 0.06 1.56 7.79 -2.39 -0.02 1.54 16 5 C -0.16 -3.39 9.53 71.98 0.69 -2.71 16 6 C 0.06 1.90 5.37 86.30 0.46 2.36 16 7 N -0.67 -27.26 6.34 -513.91 -3.26 -30.52 16 8 C 0.12 5.54 5.54 86.31 0.48 6.01 16 9 C 0.02 1.23 1.65 -52.93 -0.09 1.14 16 10 C -0.50 -27.51 8.33 25.60 0.21 -27.30 16 11 H 0.05 2.83 7.82 -2.91 -0.02 2.81 16 12 C 0.02 1.29 5.43 84.66 0.46 1.75 16 13 N -0.91 -52.16 12.65 21.45 0.27 -51.89 16 14 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 15 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 C -0.18 -8.30 9.96 30.62 0.30 -8.00 16 19 C -0.16 -7.97 9.14 30.62 0.28 -7.69 16 20 H 0.05 0.97 7.87 -2.39 -0.02 0.95 16 21 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.04 0.87 8.08 -2.39 -0.02 0.85 16 23 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 1.23 7.87 -2.39 -0.02 1.21 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.34 14.19 8.31 -89.69 -0.75 13.45 16 29 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 30 H 0.05 2.00 8.08 -2.39 -0.02 1.99 16 31 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 32 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 34 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 35 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -60.39 294.30 1.93 -58.46 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.29 Total: 22.32 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: 4.11 Total: -30.01 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -2.98 Total: -82.41 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -1.52 Total: -13.55 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -60.39 1.93 -58.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224195334.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.416 kcal (2) G-P(sol) polarization free energy of solvation -60.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds