Wall clock time and date at job start Mon Mar 30 2020 20:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.46872 * 2 1 4 4 C 1.46899 * 111.00373 * 285.81754 * 3 2 1 5 5 C 1.50703 * 109.46935 * 74.31052 * 4 3 2 6 6 H 1.07999 * 119.99924 * 5.49488 * 5 4 3 7 7 C 1.37876 * 120.00066 * 185.50088 * 5 4 3 8 8 N 1.31517 * 119.99963 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00101 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47383 * 59.99962 * 9 7 5 11 11 H 1.48496 * 109.47255 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47336 * 300.00042 * 9 7 5 13 13 C 1.46902 * 110.99962 * 161.86495 * 3 2 1 14 14 H 1.08997 * 110.54052 * 172.02275 * 13 3 2 15 15 C 1.54890 * 110.48752 * 49.40505 * 13 3 2 16 16 C 1.54889 * 102.75129 * 203.37943 * 15 13 3 17 17 C 1.54272 * 104.19139 * 37.94571 * 16 15 13 18 18 C 1.53872 * 106.59815 * 336.38527 * 17 16 15 19 19 H 1.09006 * 110.02828 * 119.28745 * 18 17 16 20 20 O 1.42899 * 110.03226 * 240.66646 * 18 17 16 21 21 H 1.08998 * 109.47103 * 69.63190 * 1 2 3 22 22 H 1.09002 * 109.46708 * 189.62508 * 1 2 3 23 23 H 1.08994 * 109.47284 * 309.62866 * 1 2 3 24 24 H 1.09004 * 109.47278 * 240.00688 * 2 1 3 25 25 H 1.09000 * 109.47447 * 120.00170 * 2 1 3 26 26 H 1.09000 * 109.47191 * 194.30204 * 4 3 2 27 27 H 1.08998 * 109.47186 * 314.30589 * 4 3 2 28 28 H 0.97000 * 120.00123 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.75001 * 85.06565 * 15 13 3 30 30 H 1.08996 * 110.75524 * 321.69951 * 15 13 3 31 31 H 1.09003 * 110.48765 * 279.26767 * 16 15 13 32 32 H 1.08995 * 110.48361 * 156.62026 * 16 15 13 33 33 H 1.08994 * 110.03027 * 95.67879 * 17 16 15 34 34 H 1.09005 * 110.02791 * 217.05661 * 17 16 15 35 35 H 0.96701 * 114.00343 * 298.55322 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8427 2.0060 -1.3195 5 6 0.3863 2.3313 -1.5303 6 1 -0.3218 2.1823 -0.7286 7 6 -0.0420 2.8190 -2.7467 8 7 0.8204 3.0008 -3.7228 9 14 -1.8472 3.2216 -3.0082 10 1 -2.2683 4.2622 -2.0361 11 1 -2.0468 3.7253 -4.3908 12 1 -2.6620 1.9966 -2.8058 13 6 3.4239 1.4469 0.4269 14 1 3.8210 2.4528 0.2906 15 6 4.2748 0.4173 -0.3573 16 6 5.4831 0.1850 0.5836 17 6 4.8696 0.2051 1.9989 18 6 3.5605 1.0075 1.8993 19 1 2.7153 0.3795 2.1814 20 8 3.6232 2.1542 2.7497 21 1 -0.3633 0.3577 -0.9634 22 1 -0.3633 -1.0132 0.1718 23 1 -0.3633 0.6554 0.7914 24 1 1.8934 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 2.4308 2.9223 -1.3716 27 1 2.1765 1.3154 -2.0938 28 1 0.5190 3.3436 -4.5787 29 1 4.6017 0.8326 -1.3106 30 1 3.7191 -0.5081 -0.5081 31 1 6.2127 0.9872 0.4726 32 1 5.9438 -0.7818 0.3811 33 1 4.6600 -0.8122 2.3294 34 1 5.5536 0.6902 2.6954 35 1 3.7304 1.9432 3.6873 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226281811.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:53 Heat of formation + Delta-G solvation = -75.436506 kcal Electronic energy + Delta-G solvation = -15138.219618 eV Core-core repulsion = 12748.916858 eV Total energy + Delta-G solvation = -2389.302760 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.54473 -37.55651 -35.59515 -34.41425 -31.46319 -29.69028 -28.58649 -26.93829 -24.30236 -23.03384 -21.48648 -20.19018 -18.51670 -18.21067 -16.96017 -16.61637 -16.28379 -15.57720 -15.20765 -14.87020 -14.27935 -13.94310 -13.59585 -13.45654 -13.13263 -13.02998 -12.82866 -12.67406 -12.38149 -12.22032 -12.11685 -12.02519 -11.59372 -11.51432 -11.11576 -11.03311 -10.70557 -10.51616 -8.92417 -8.15311 -6.22003 1.40832 1.44135 1.51614 2.41832 3.15362 3.18992 3.36302 3.66076 3.95084 4.05971 4.25491 4.41642 4.46579 4.53217 4.57775 4.63047 4.74707 4.86205 4.97997 5.01778 5.08255 5.11664 5.15729 5.24435 5.28368 5.36563 5.39058 5.70064 5.74224 6.12831 6.43033 6.69601 6.91607 7.04689 7.44190 8.95095 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.043346 B = 0.008259 C = 0.007944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.806873 B = 3389.565514 C = 3523.898779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.065 3.935 3 N -0.538 5.538 4 C 0.213 3.787 5 C -0.511 4.511 6 H 0.075 0.925 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.964 3.036 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.077 3.923 14 H 0.056 0.944 15 C -0.156 4.156 16 C -0.111 4.111 17 C -0.145 4.145 18 C 0.110 3.890 19 H 0.066 0.934 20 O -0.582 6.582 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.017 0.983 25 H 0.082 0.918 26 H -0.014 1.014 27 H -0.030 1.030 28 H 0.262 0.738 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.056 -8.405 11.340 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.063 4.063 3 N -0.261 5.261 4 C 0.087 3.913 5 C -0.549 4.549 6 H 0.093 0.907 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.789 3.211 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.189 1.189 13 C -0.032 4.032 14 H 0.074 0.926 15 C -0.195 4.195 16 C -0.149 4.149 17 C -0.183 4.183 18 C 0.051 3.949 19 H 0.084 0.916 20 O -0.390 6.390 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.035 0.965 25 H 0.101 0.899 26 H 0.004 0.996 27 H -0.013 1.013 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 5.699 -7.765 10.944 14.579 hybrid contribution -0.187 -0.046 -0.881 0.902 sum 5.511 -7.811 10.063 13.880 Atomic orbital electron populations 1.21959 0.95185 1.00457 1.02566 1.21984 0.96523 0.88558 0.99214 1.62149 1.16923 1.17761 1.29261 1.19344 0.96251 0.91721 0.83970 1.21642 0.94183 1.41232 0.97866 0.90705 1.25914 1.02405 0.95878 0.95854 1.70099 1.36273 1.47375 1.04236 0.85516 0.79675 0.78998 0.76955 1.19618 1.21104 1.18852 1.22580 0.88109 0.98323 0.94216 0.92570 1.23113 0.98182 0.99573 0.98642 1.22215 0.96199 1.02535 0.93942 1.22850 0.96242 1.01317 0.97904 1.22497 0.97134 0.86322 0.88903 0.91599 1.86565 1.96581 1.33721 1.22099 0.92704 0.91584 0.93351 0.96517 0.89941 0.99594 1.01253 0.92962 0.93464 0.90671 0.91667 0.89578 0.89194 0.89408 0.75970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.55 8.59 71.98 0.62 -4.93 16 2 C 0.06 2.49 4.22 86.30 0.36 2.85 16 3 N -0.54 -24.21 4.46 -869.24 -3.88 -28.09 16 4 C 0.21 11.83 4.43 85.56 0.38 12.21 16 5 C -0.51 -29.41 6.97 25.60 0.18 -29.23 16 6 H 0.07 4.18 5.87 -2.91 -0.02 4.16 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 8 N -0.94 -57.97 13.29 21.45 0.28 -57.69 16 9 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 13 C 0.08 2.96 2.63 45.99 0.12 3.08 16 14 H 0.06 2.49 7.78 -2.39 -0.02 2.47 16 15 C -0.16 -5.13 5.87 31.89 0.19 -4.94 16 16 C -0.11 -2.65 6.83 31.67 0.22 -2.43 16 17 C -0.15 -3.07 6.60 31.32 0.21 -2.86 16 18 C 0.11 3.23 3.66 31.32 0.11 3.34 16 19 H 0.07 1.89 6.15 -2.38 -0.01 1.87 16 20 O -0.58 -17.36 13.23 -148.98 -1.97 -19.34 16 21 H 0.05 2.49 5.63 -2.39 -0.01 2.48 16 22 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.05 1.88 7.92 -2.39 -0.02 1.86 16 24 H 0.02 0.67 6.65 -2.39 -0.02 0.66 16 25 H 0.08 2.59 6.00 -2.39 -0.01 2.58 16 26 H -0.01 -0.86 7.77 -2.39 -0.02 -0.88 16 27 H -0.03 -1.81 7.77 -2.39 -0.02 -1.83 16 28 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 2.42 5.87 -2.39 -0.01 2.41 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.59 7.96 -2.38 -0.02 1.57 16 35 H 0.39 7.12 9.10 -74.06 -0.67 6.45 16 Total: -1.00 -68.69 270.57 -0.29 -68.98 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.40 Total: 11.52 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 2.85 Total: -22.65 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -3.59 Total: -85.77 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -1.97 Total: -19.34 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -68.69 -0.29 -68.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226281811.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.457 kcal (2) G-P(sol) polarization free energy of solvation -68.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds