Wall clock time and date at job start Mon Mar 30 2020 20:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46961 * 110.99472 * 2 1 4 4 C 1.53049 * 109.36471 * 183.16391 * 3 2 1 5 5 N 1.46958 * 109.38271 * 301.63550 * 4 3 2 6 6 C 1.46907 * 110.99866 * 183.17463 * 5 4 3 7 7 C 1.50704 * 109.47093 * 294.17021 * 6 5 4 8 8 H 1.07998 * 119.99865 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99975 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99919 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00063 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47323 * 60.00074 * 11 9 7 13 13 H 1.48504 * 109.47340 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47162 * 299.99844 * 11 9 7 15 15 C 1.46956 * 110.88109 * 59.30747 * 5 4 3 16 16 H 1.09006 * 109.48998 * 60.64560 * 15 5 4 17 17 C 1.53005 * 109.48658 * 180.71060 * 15 5 4 18 18 N 1.46899 * 109.46669 * 183.46889 * 17 15 5 19 19 C 1.46956 * 111.00254 * 123.81897 * 2 1 3 20 20 H 1.08992 * 109.46934 * 296.17515 * 1 2 3 21 21 H 1.08994 * 109.47058 * 56.17888 * 1 2 3 22 22 H 1.09006 * 109.46572 * 176.17529 * 1 2 3 23 23 H 1.09008 * 109.47259 * 63.21117 * 3 2 1 24 24 H 1.08998 * 109.50822 * 303.14528 * 3 2 1 25 25 H 1.08994 * 109.49368 * 181.65193 * 4 3 2 26 26 H 1.09007 * 109.48656 * 61.61305 * 4 3 2 27 27 H 1.09000 * 109.47227 * 54.17051 * 6 5 4 28 28 H 1.08998 * 109.46777 * 174.16984 * 6 5 4 29 29 H 0.96994 * 120.00346 * 180.02562 * 10 9 7 30 30 H 1.08996 * 109.46956 * 303.46680 * 17 15 5 31 31 H 1.09000 * 109.47123 * 63.47274 * 17 15 5 32 32 H 1.00903 * 110.99832 * 65.44046 * 18 17 15 33 33 H 1.00901 * 111.00099 * 189.38961 * 18 17 15 34 34 H 1.09004 * 109.48402 * 56.84913 * 19 2 1 35 35 H 1.08996 * 109.50940 * 296.79567 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3293 -0.0797 5 7 4.0500 0.5656 1.0601 6 6 5.5191 0.5657 1.0601 7 6 6.0215 -0.1873 -0.1448 8 1 5.3197 -0.6221 -0.8411 9 6 7.3770 -0.3212 -0.3581 10 7 8.2316 0.2078 0.4901 11 14 7.9998 -1.2540 -1.8519 12 1 7.5054 -0.5959 -3.0880 13 1 9.4848 -1.2551 -1.8512 14 1 7.5043 -2.6530 -1.8038 15 6 3.5235 -0.8064 1.0595 16 1 3.8254 -1.3114 0.1419 17 6 4.0771 -1.5660 2.2668 18 7 3.6173 -2.9604 2.2206 19 6 1.9957 -0.7636 1.1398 20 1 -0.3633 0.4533 0.9222 21 1 -0.3633 0.5720 -0.8537 22 1 -0.3633 -1.0255 -0.0686 23 1 1.6933 1.8773 0.9174 24 1 1.6015 1.9131 -0.8602 25 1 3.9177 2.3450 -0.0503 26 1 3.8257 0.8487 -1.0103 27 1 5.8824 1.5928 1.0241 28 1 5.8824 0.0834 1.9675 29 1 9.1852 0.1139 0.3399 30 1 5.1665 -1.5417 2.2429 31 1 3.7231 -1.0969 3.1848 32 1 4.0053 -3.4429 1.4239 33 1 3.8389 -3.4429 3.0786 34 1 1.6014 -1.7794 1.1103 35 1 1.6938 -0.2832 2.0704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226625717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:08 Heat of formation + Delta-G solvation = 11.755647 kcal Electronic energy + Delta-G solvation = -15266.593741 eV Core-core repulsion = 12913.364667 eV Total energy + Delta-G solvation = -2353.229073 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.154 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.86325 -35.38055 -33.86370 -32.31643 -29.82816 -28.55612 -25.79076 -24.73494 -23.41626 -21.75146 -20.60027 -18.93303 -16.30163 -15.64683 -15.15641 -15.04566 -14.53561 -14.35367 -14.00425 -13.60300 -13.01533 -12.87103 -12.16421 -11.95060 -11.82165 -11.61608 -11.38084 -11.02316 -10.83075 -10.56566 -10.38854 -10.08904 -9.93406 -9.84474 -9.49942 -8.45655 -8.11975 -7.93939 -7.14140 -6.03310 -4.12366 3.27872 3.32896 3.36146 4.36776 4.40129 4.81351 5.26591 5.35510 5.41440 5.52658 5.67783 5.71214 5.90976 5.98392 5.99975 6.02523 6.14624 6.25657 6.43381 6.57656 6.64016 6.81192 6.97126 7.23747 7.44472 7.50924 7.51930 7.58422 7.84836 7.90517 8.08993 8.29702 8.32962 8.98679 9.54541 11.01318 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030897 B = 0.010061 C = 0.009092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.021113 B = 2782.380161 C = 3078.899070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.066 3.934 5 N -0.542 5.542 6 C 0.184 3.816 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.065 3.935 10 N -0.892 5.892 11 Si 0.888 3.112 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.102 3.898 16 H 0.054 0.946 17 C 0.068 3.932 18 N -0.852 5.852 19 C 0.073 3.927 20 H 0.019 0.981 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.032 0.968 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.029 0.971 28 H 0.034 0.966 29 H 0.262 0.738 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.339 0.661 33 H 0.334 0.666 34 H 0.080 0.920 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.575 -1.743 1.209 10.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.271 5.271 3 C -0.071 4.071 4 C -0.063 4.063 5 N -0.267 5.267 6 C 0.059 3.941 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.138 4.138 10 N -0.531 5.531 11 Si 0.716 3.284 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.008 4.008 16 H 0.072 0.928 17 C -0.063 4.063 18 N -0.381 5.381 19 C -0.055 4.055 20 H 0.038 0.962 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.051 0.949 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.098 0.902 35 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -11.108 -1.379 1.183 11.256 hybrid contribution 1.543 -0.704 -0.778 1.866 sum -9.566 -2.083 0.405 9.798 Atomic orbital electron populations 1.22294 0.88376 1.01592 0.99751 1.62130 1.06715 1.14252 1.44025 1.22234 0.96398 0.88841 0.99621 1.21903 0.91677 0.98430 0.94280 1.62628 1.11502 1.11853 1.40678 1.19791 0.80622 0.97250 0.96454 1.21723 0.91855 1.35183 1.09769 0.92418 1.24956 0.96984 0.95542 0.96298 1.69933 1.02209 1.44771 1.36176 0.86721 0.77602 0.80492 0.83598 1.20228 1.21291 1.20316 1.21288 0.91797 0.90237 0.97497 0.92805 1.21781 0.98762 0.87660 0.98094 1.58717 1.67624 1.04006 1.07731 1.22155 0.95533 0.97626 0.90177 0.96241 0.92005 0.91800 0.94944 0.91459 0.91349 0.93525 0.95336 0.94777 0.92811 0.93048 0.91828 0.84935 0.85481 0.90211 0.95400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.60 60.07 0.58 0.96 16 2 N -0.55 -9.29 4.97 -242.76 -1.21 -10.50 16 3 C 0.06 0.97 5.62 -3.77 -0.02 0.95 16 4 C 0.07 1.33 5.33 -3.77 -0.02 1.31 16 5 N -0.54 -11.80 4.73 -227.92 -1.08 -12.88 16 6 C 0.18 4.70 4.61 -4.97 -0.02 4.67 16 7 C -0.55 -14.84 7.68 -34.44 -0.26 -15.10 16 8 H 0.06 1.59 5.80 -52.49 -0.30 1.29 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 11 Si 0.89 21.43 29.54 -169.99 -5.02 16.40 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.10 2.04 1.85 -67.66 -0.12 1.92 16 16 H 0.05 1.24 6.46 -51.93 -0.34 0.90 16 17 C 0.07 1.27 5.95 -3.82 -0.02 1.25 16 18 N -0.85 -13.14 9.01 -10.37 -0.09 -13.24 16 19 C 0.07 1.29 4.76 -3.77 -0.02 1.27 16 20 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 21 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.03 0.55 8.14 -51.92 -0.42 0.12 16 24 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 25 H 0.07 1.35 8.11 -51.93 -0.42 0.93 16 26 H 0.05 1.04 6.94 -51.93 -0.36 0.68 16 27 H 0.03 0.79 8.10 -51.93 -0.42 0.36 16 28 H 0.03 0.92 6.29 -51.93 -0.33 0.59 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.05 1.11 6.21 -51.93 -0.32 0.78 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.34 5.23 9.07 -39.29 -0.36 4.87 16 33 H 0.33 4.38 9.08 -39.29 -0.36 4.02 16 34 H 0.08 1.37 7.76 -51.93 -0.40 0.96 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 272.81 15.07 4.11 4.11 Total: -1.00 -28.69 272.81 -8.27 -36.95 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.70 Total: 5.44 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.01 Total: -1.06 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -1.64 Total: -61.85 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.69 -8.27 -36.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226625717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.709 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds