Wall clock time and date at job start Mon Mar 30 2020 20:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46961 * 110.99472 * 2 1 4 4 C 1.53049 * 109.36471 * 183.16391 * 3 2 1 5 5 N 1.46958 * 109.38271 * 301.63550 * 4 3 2 6 6 C 1.46907 * 110.99866 * 183.17463 * 5 4 3 7 7 C 1.50704 * 109.47093 * 294.17021 * 6 5 4 8 8 H 1.07998 * 119.99865 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99975 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99919 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00063 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47323 * 60.00074 * 11 9 7 13 13 H 1.48504 * 109.47340 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47162 * 299.99844 * 11 9 7 15 15 C 1.46956 * 110.88109 * 59.30747 * 5 4 3 16 16 H 1.09006 * 109.48998 * 60.64560 * 15 5 4 17 17 C 1.53005 * 109.48658 * 180.71060 * 15 5 4 18 18 N 1.46899 * 109.46669 * 183.46889 * 17 15 5 19 19 C 1.46956 * 111.00254 * 123.81897 * 2 1 3 20 20 H 1.08992 * 109.46934 * 296.17515 * 1 2 3 21 21 H 1.08994 * 109.47058 * 56.17888 * 1 2 3 22 22 H 1.09006 * 109.46572 * 176.17529 * 1 2 3 23 23 H 1.09008 * 109.47259 * 63.21117 * 3 2 1 24 24 H 1.08998 * 109.50822 * 303.14528 * 3 2 1 25 25 H 1.08994 * 109.49368 * 181.65193 * 4 3 2 26 26 H 1.09007 * 109.48656 * 61.61305 * 4 3 2 27 27 H 1.09000 * 109.47227 * 54.17051 * 6 5 4 28 28 H 1.08998 * 109.46777 * 174.16984 * 6 5 4 29 29 H 0.96994 * 120.00346 * 180.02562 * 10 9 7 30 30 H 1.08996 * 109.46956 * 303.46680 * 17 15 5 31 31 H 1.09000 * 109.47123 * 63.47274 * 17 15 5 32 32 H 1.00903 * 110.99832 * 65.44046 * 18 17 15 33 33 H 1.00901 * 111.00099 * 189.38961 * 18 17 15 34 34 H 1.09004 * 109.48402 * 56.84913 * 19 2 1 35 35 H 1.08996 * 109.50940 * 296.79567 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3293 -0.0797 5 7 4.0500 0.5656 1.0601 6 6 5.5191 0.5657 1.0601 7 6 6.0215 -0.1873 -0.1448 8 1 5.3197 -0.6221 -0.8411 9 6 7.3770 -0.3212 -0.3581 10 7 8.2316 0.2078 0.4901 11 14 7.9998 -1.2540 -1.8519 12 1 7.5054 -0.5959 -3.0880 13 1 9.4848 -1.2551 -1.8512 14 1 7.5043 -2.6530 -1.8038 15 6 3.5235 -0.8064 1.0595 16 1 3.8254 -1.3114 0.1419 17 6 4.0771 -1.5660 2.2668 18 7 3.6173 -2.9604 2.2206 19 6 1.9957 -0.7636 1.1398 20 1 -0.3633 0.4533 0.9222 21 1 -0.3633 0.5720 -0.8537 22 1 -0.3633 -1.0255 -0.0686 23 1 1.6933 1.8773 0.9174 24 1 1.6015 1.9131 -0.8602 25 1 3.9177 2.3450 -0.0503 26 1 3.8257 0.8487 -1.0103 27 1 5.8824 1.5928 1.0241 28 1 5.8824 0.0834 1.9675 29 1 9.1852 0.1139 0.3399 30 1 5.1665 -1.5417 2.2429 31 1 3.7231 -1.0969 3.1848 32 1 4.0053 -3.4429 1.4239 33 1 3.8389 -3.4429 3.0786 34 1 1.6014 -1.7794 1.1103 35 1 1.6938 -0.2832 2.0704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226625717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:08 Heat of formation + Delta-G solvation = -12.163451 kcal Electronic energy + Delta-G solvation = -15267.630951 eV Core-core repulsion = 12913.364667 eV Total energy + Delta-G solvation = -2354.266283 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.42819 -36.89695 -35.46869 -34.31699 -31.29543 -30.21526 -27.57236 -26.19027 -25.05729 -23.50189 -22.09156 -20.62738 -18.33496 -17.26711 -16.70731 -16.58050 -16.23841 -15.77533 -15.43050 -15.22671 -14.68083 -14.47772 -13.86113 -13.51772 -13.24419 -13.17951 -12.94312 -12.76197 -12.58585 -12.21257 -12.20114 -11.82320 -11.76584 -11.54851 -11.28901 -10.60541 -9.54864 -9.25593 -9.00280 -8.15804 -6.34613 1.35334 1.36252 1.44613 2.36097 3.07920 3.08952 3.21996 3.87216 4.10931 4.13078 4.24172 4.40619 4.48934 4.61257 4.64772 4.71219 4.79237 4.92412 5.01387 5.04556 5.09216 5.16758 5.26595 5.31388 5.37449 5.73977 6.03971 6.12023 6.13551 6.21964 6.33954 6.52073 6.66735 6.85990 7.36371 8.86084 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030897 B = 0.010061 C = 0.009092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.021113 B = 2782.380161 C = 3078.899070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.564 5.564 3 C 0.067 3.933 4 C 0.065 3.935 5 N -0.541 5.541 6 C 0.200 3.800 7 C -0.549 4.549 8 H 0.051 0.949 9 C 0.014 3.986 10 N -0.925 5.925 11 Si 0.953 3.047 12 H -0.273 1.273 13 H -0.281 1.281 14 H -0.270 1.270 15 C 0.104 3.896 16 H 0.023 0.977 17 C 0.080 3.920 18 N -0.839 5.839 19 C 0.086 3.914 20 H 0.028 0.972 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.038 0.962 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.020 0.980 27 H 0.000 1.000 28 H 0.015 0.985 29 H 0.265 0.735 30 H 0.015 0.985 31 H 0.070 0.930 32 H 0.341 0.659 33 H 0.350 0.650 34 H 0.089 0.911 35 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.274 -2.435 0.630 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.289 5.289 3 C -0.061 4.061 4 C -0.064 4.064 5 N -0.265 5.265 6 C 0.073 3.927 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.185 4.185 10 N -0.565 5.565 11 Si 0.778 3.222 12 H -0.198 1.198 13 H -0.207 1.207 14 H -0.195 1.195 15 C -0.006 4.006 16 H 0.041 0.959 17 C -0.052 4.052 18 N -0.369 5.369 19 C -0.042 4.042 20 H 0.046 0.954 21 H 0.097 0.903 22 H 0.093 0.907 23 H 0.056 0.944 24 H 0.110 0.890 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.019 0.981 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.088 0.912 32 H 0.153 0.847 33 H 0.163 0.837 34 H 0.107 0.893 35 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -12.837 -2.083 0.611 13.019 hybrid contribution 2.030 -0.482 -0.578 2.165 sum -10.807 -2.565 0.033 11.107 Atomic orbital electron populations 1.22366 0.85664 1.02820 1.00948 1.62115 1.09184 1.13970 1.43622 1.22136 0.93462 0.89446 1.01039 1.21954 0.94499 0.97654 0.92295 1.62593 1.09143 1.13310 1.41480 1.19437 0.83146 0.94932 0.95151 1.21860 0.91986 1.34985 1.09955 0.93097 1.25747 0.97223 0.96434 0.99112 1.70047 1.02509 1.46012 1.37919 0.85692 0.77161 0.79360 0.79992 1.19816 1.20674 1.19504 1.21314 0.93899 0.88823 0.96536 0.95924 1.21549 0.96405 0.89504 0.97763 1.58662 1.66921 1.02530 1.08788 1.21980 0.93144 0.98442 0.90669 0.95360 0.90328 0.90721 0.94357 0.88963 0.91536 0.96143 0.98136 0.96693 0.92652 0.96688 0.91192 0.84733 0.83669 0.89255 0.95271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.60 127.69 1.23 1.92 16 2 N -0.56 -17.83 4.97 -921.94 -4.58 -22.41 16 3 C 0.07 2.15 5.62 86.31 0.49 2.63 16 4 C 0.06 2.62 5.33 86.31 0.46 3.08 16 5 N -0.54 -23.93 4.73 -875.00 -4.14 -28.07 16 6 C 0.20 10.58 4.61 85.56 0.39 10.98 16 7 C -0.55 -30.59 7.68 25.60 0.20 -30.39 16 8 H 0.05 2.87 5.80 -2.91 -0.02 2.86 16 9 C 0.01 0.80 5.46 84.65 0.46 1.27 16 10 N -0.93 -54.96 13.29 21.45 0.28 -54.67 16 11 Si 0.95 44.25 29.54 68.60 2.03 46.28 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 15 C 0.10 4.17 1.85 44.92 0.08 4.25 16 16 H 0.02 1.06 6.46 -2.38 -0.02 1.04 16 17 C 0.08 2.97 5.95 86.31 0.51 3.48 16 18 N -0.84 -24.87 9.01 -186.72 -1.68 -26.56 16 19 C 0.09 2.88 4.76 86.31 0.41 3.29 16 20 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 21 H 0.08 1.58 8.13 -2.39 -0.02 1.56 16 22 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 23 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 24 H 0.09 2.50 8.13 -2.39 -0.02 2.48 16 25 H 0.07 2.66 8.11 -2.39 -0.02 2.64 16 26 H 0.02 0.93 6.94 -2.38 -0.02 0.91 16 27 H 0.00 0.03 8.10 -2.39 -0.02 0.01 16 28 H 0.02 0.85 6.29 -2.39 -0.02 0.83 16 29 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 30 H 0.01 0.66 6.21 -2.39 -0.01 0.65 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.34 10.18 9.07 -89.69 -0.81 9.37 16 33 H 0.35 8.60 9.08 -89.69 -0.81 7.79 16 34 H 0.09 2.84 7.76 -2.38 -0.02 2.82 16 35 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -61.87 272.81 -4.41 -66.28 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.55 Total: 18.64 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 4.23 Total: 0.51 kcal Atomic # 7 Polarization: -121.59 SS G_CDS: -10.12 Total: -131.70 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -61.87 -4.41 -66.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226625717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.117 kcal (2) G-P(sol) polarization free energy of solvation -61.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds