Wall clock time and date at job start Mon Mar 30 2020 20:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46967 * 2 1 4 4 C 1.50699 * 109.47194 * 119.99614 * 2 1 3 5 5 H 1.07997 * 120.00251 * 119.99871 * 4 2 1 6 6 C 1.37879 * 119.99738 * 300.28040 * 4 2 1 7 7 N 1.31511 * 120.00481 * 359.72323 * 6 4 2 8 8 Si 1.86802 * 119.99670 * 179.71949 * 6 4 2 9 9 H 1.48500 * 109.46957 * 89.99939 * 8 6 4 10 10 H 1.48500 * 109.47386 * 209.99719 * 8 6 4 11 11 H 1.48502 * 109.47495 * 330.00121 * 8 6 4 12 12 N 1.46897 * 109.47168 * 240.00139 * 2 1 3 13 13 C 1.46898 * 111.00014 * 306.04082 * 12 2 1 14 14 C 1.52993 * 109.47605 * 196.27818 * 13 12 2 15 15 O 1.42900 * 109.47020 * 65.04224 * 14 13 12 16 16 C 1.46894 * 111.00142 * 69.99876 * 12 2 1 17 17 C 1.53786 * 113.61021 * 148.32214 * 16 12 2 18 18 C 1.53776 * 87.07890 * 220.01794 * 17 16 12 19 19 C 1.53779 * 87.08435 * 25.43247 * 18 17 16 20 20 H 1.08998 * 109.46967 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47611 * 300.00356 * 1 2 3 22 22 H 1.09005 * 109.47187 * 60.00047 * 1 2 3 23 23 H 0.97002 * 119.99901 * 180.02562 * 7 6 4 24 24 H 1.09004 * 109.47178 * 316.28209 * 13 12 2 25 25 H 1.09003 * 109.46559 * 76.27346 * 13 12 2 26 26 H 1.08999 * 109.47678 * 185.04822 * 14 13 12 27 27 H 1.09010 * 109.46853 * 305.04819 * 14 13 12 28 28 H 0.96698 * 113.99879 * 180.02562 * 15 14 13 29 29 H 1.08995 * 112.85198 * 279.62896 * 16 12 2 30 30 H 1.09001 * 113.61763 * 334.56639 * 17 16 12 31 31 H 1.09001 * 113.61328 * 105.47144 * 17 16 12 32 32 H 1.09008 * 113.61898 * 270.88558 * 18 17 16 33 33 H 1.09001 * 113.61803 * 139.98652 * 18 17 16 34 34 H 1.08998 * 113.61608 * 220.01250 * 19 18 17 35 35 H 1.09005 * 113.68461 * 89.12344 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6945 -0.2425 2.4827 7 7 0.9383 0.8267 2.6034 8 14 2.3107 -1.1276 4.0080 9 1 3.6175 -0.5543 4.4188 10 1 1.3283 -0.9594 5.1088 11 1 2.4763 -2.5727 3.7088 12 7 2.0197 -0.6924 -1.1994 13 6 1.4344 -2.0354 -1.3078 14 6 2.2455 -2.8665 -2.3038 15 8 3.5641 -3.0699 -1.7920 16 6 1.7529 0.0972 -2.4090 17 6 2.8084 -0.0895 -3.5117 18 6 2.6919 1.4219 -3.7699 19 6 2.2289 1.5561 -2.3097 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 0.7010 1.1560 3.4844 24 1 1.4523 -2.5195 -0.3312 25 1 0.4042 -1.9558 -1.6549 26 1 1.7605 -3.8313 -2.4521 27 1 2.3028 -2.3385 -3.2558 28 1 4.1357 -3.5901 -2.3731 29 1 0.7271 -0.0041 -2.7630 30 1 3.7847 -0.3941 -3.1346 31 1 2.4654 -0.7026 -4.3451 32 1 1.9232 1.6827 -4.4974 33 1 3.6478 1.9055 -3.9712 34 1 1.4182 2.2717 -2.1726 35 1 3.0459 1.7017 -1.6029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228374405.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:17 Heat of formation + Delta-G solvation = -23.975207 kcal Electronic energy + Delta-G solvation = -15326.955661 eV Core-core repulsion = 12939.884430 eV Total energy + Delta-G solvation = -2387.071231 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.97450 -36.28076 -35.05910 -32.34067 -29.46797 -27.09902 -25.18206 -25.00840 -23.65868 -21.62065 -19.68065 -18.25949 -16.99577 -16.01523 -15.46795 -15.20626 -14.47666 -14.05121 -13.50471 -12.96821 -12.38790 -12.27795 -12.12525 -11.86185 -11.57698 -11.27200 -10.86514 -10.72390 -10.63050 -10.41231 -10.28213 -9.98395 -9.92932 -9.85030 -9.42801 -9.24215 -8.74333 -8.27087 -7.02910 -5.91906 -3.93814 3.37726 3.43454 3.48707 4.49861 4.84888 5.00651 5.14749 5.27107 5.38751 5.41298 5.47819 5.75357 5.83335 6.03153 6.06664 6.11466 6.23619 6.35241 6.40170 6.51509 6.72495 6.80360 6.86916 6.91566 6.97171 7.22883 7.59892 7.77409 7.97882 8.16793 8.30264 8.49795 8.74804 9.14765 9.70711 11.15280 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029862 B = 0.010859 C = 0.009041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.432602 B = 2577.931646 C = 3096.175322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.210 3.790 3 H 0.044 0.956 4 C -0.493 4.493 5 H 0.065 0.935 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.508 5.508 13 C 0.061 3.939 14 C 0.079 3.921 15 O -0.550 6.550 16 C 0.056 3.944 17 C -0.125 4.125 18 C -0.147 4.147 19 C -0.126 4.126 20 H 0.026 0.974 21 H 0.087 0.913 22 H 0.004 0.996 23 H 0.258 0.742 24 H 0.090 0.910 25 H 0.032 0.968 26 H 0.030 0.970 27 H 0.041 0.959 28 H 0.359 0.641 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.332 -3.050 -11.041 11.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.062 0.938 4 C -0.532 4.532 5 H 0.083 0.917 6 C -0.144 4.144 7 N -0.538 5.538 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.200 1.200 12 N -0.231 5.231 13 C -0.068 4.068 14 C 0.001 3.999 15 O -0.352 6.352 16 C -0.053 4.053 17 C -0.163 4.163 18 C -0.185 4.185 19 C -0.163 4.163 20 H 0.046 0.954 21 H 0.106 0.894 22 H 0.023 0.977 23 H 0.068 0.932 24 H 0.108 0.892 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.203 0.797 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.509 -2.629 -10.331 10.767 hybrid contribution -0.580 -0.670 0.299 0.935 sum 0.929 -3.299 -10.032 10.602 Atomic orbital electron populations 1.22426 1.01124 0.99053 1.00386 1.19325 0.89431 0.94882 0.85982 0.93802 1.21198 1.29891 1.12481 0.89612 0.91712 1.24923 0.95367 0.95231 0.98925 1.69890 1.37391 1.23332 1.23167 0.86545 0.78406 0.80138 0.82586 1.20784 1.21551 1.19966 1.62467 1.57905 1.00940 1.01838 1.22000 0.93249 0.91432 1.00117 1.22370 0.83867 0.96756 0.96944 1.86754 1.23551 1.76365 1.48504 1.23040 0.95532 0.94272 0.92478 1.23040 1.00878 0.95029 0.97337 1.22781 1.00742 0.97500 0.97444 1.22922 1.01275 0.96193 0.95928 0.95449 0.89421 0.97661 0.93199 0.89190 0.94966 0.95221 0.94056 0.79687 0.93325 0.89258 0.93091 0.91151 0.91898 0.92349 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.31 37.16 0.31 -3.89 16 2 C 0.21 5.35 2.13 -68.87 -0.15 5.20 16 3 H 0.04 1.22 6.40 -51.93 -0.33 0.89 16 4 C -0.49 -13.89 7.73 -34.44 -0.27 -14.15 16 5 H 0.06 1.89 7.26 -52.49 -0.38 1.50 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -26.01 11.31 55.43 0.63 -25.38 16 8 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.51 -11.12 4.35 -219.14 -0.95 -12.07 16 13 C 0.06 1.22 4.04 -3.83 -0.02 1.21 16 14 C 0.08 1.29 6.97 37.15 0.26 1.55 16 15 O -0.55 -9.58 13.61 -35.23 -0.48 -10.05 16 16 C 0.06 1.04 2.37 -66.90 -0.16 0.88 16 17 C -0.12 -1.95 5.98 -25.92 -0.15 -2.10 16 18 C -0.15 -2.11 8.08 -25.92 -0.21 -2.32 16 19 C -0.13 -2.23 6.37 -25.92 -0.17 -2.40 16 20 H 0.03 0.65 6.70 -51.93 -0.35 0.30 16 21 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 22 H 0.00 0.10 7.25 -51.93 -0.38 -0.28 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.09 2.07 6.59 -51.93 -0.34 1.72 16 25 H 0.03 0.62 7.01 -51.93 -0.36 0.26 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.62 5.32 -51.92 -0.28 0.35 16 28 H 0.36 4.23 9.12 45.56 0.42 4.65 16 29 H 0.05 0.91 7.54 -51.93 -0.39 0.52 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.05 0.70 7.40 -51.93 -0.38 0.32 16 32 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.78 7.64 -51.93 -0.40 1.39 16 LS Contribution 270.71 15.07 4.08 4.08 Total: -1.00 -30.23 270.71 -7.13 -37.36 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.74 Total: 3.60 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -0.64 Total: -14.54 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.33 Total: -37.45 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.48 Total: -10.05 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.23 -7.13 -37.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228374405.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.381 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds