Wall clock time and date at job start Mon Mar 30 2020 20:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46967 * 2 1 4 4 C 1.50699 * 109.47194 * 119.99614 * 2 1 3 5 5 H 1.07997 * 120.00251 * 119.99871 * 4 2 1 6 6 C 1.37879 * 119.99738 * 300.28040 * 4 2 1 7 7 N 1.31511 * 120.00481 * 359.72323 * 6 4 2 8 8 Si 1.86802 * 119.99670 * 179.71949 * 6 4 2 9 9 H 1.48500 * 109.46957 * 89.99939 * 8 6 4 10 10 H 1.48500 * 109.47386 * 209.99719 * 8 6 4 11 11 H 1.48502 * 109.47495 * 330.00121 * 8 6 4 12 12 N 1.46897 * 109.47168 * 240.00139 * 2 1 3 13 13 C 1.46898 * 111.00014 * 306.04082 * 12 2 1 14 14 C 1.52993 * 109.47605 * 196.27818 * 13 12 2 15 15 O 1.42900 * 109.47020 * 65.04224 * 14 13 12 16 16 C 1.46894 * 111.00142 * 69.99876 * 12 2 1 17 17 C 1.53786 * 113.61021 * 148.32214 * 16 12 2 18 18 C 1.53776 * 87.07890 * 220.01794 * 17 16 12 19 19 C 1.53779 * 87.08435 * 25.43247 * 18 17 16 20 20 H 1.08998 * 109.46967 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47611 * 300.00356 * 1 2 3 22 22 H 1.09005 * 109.47187 * 60.00047 * 1 2 3 23 23 H 0.97002 * 119.99901 * 180.02562 * 7 6 4 24 24 H 1.09004 * 109.47178 * 316.28209 * 13 12 2 25 25 H 1.09003 * 109.46559 * 76.27346 * 13 12 2 26 26 H 1.08999 * 109.47678 * 185.04822 * 14 13 12 27 27 H 1.09010 * 109.46853 * 305.04819 * 14 13 12 28 28 H 0.96698 * 113.99879 * 180.02562 * 15 14 13 29 29 H 1.08995 * 112.85198 * 279.62896 * 16 12 2 30 30 H 1.09001 * 113.61763 * 334.56639 * 17 16 12 31 31 H 1.09001 * 113.61328 * 105.47144 * 17 16 12 32 32 H 1.09008 * 113.61898 * 270.88558 * 18 17 16 33 33 H 1.09001 * 113.61803 * 139.98652 * 18 17 16 34 34 H 1.08998 * 113.61608 * 220.01250 * 19 18 17 35 35 H 1.09005 * 113.68461 * 89.12344 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6945 -0.2425 2.4827 7 7 0.9383 0.8267 2.6034 8 14 2.3107 -1.1276 4.0080 9 1 3.6175 -0.5543 4.4188 10 1 1.3283 -0.9594 5.1088 11 1 2.4763 -2.5727 3.7088 12 7 2.0197 -0.6924 -1.1994 13 6 1.4344 -2.0354 -1.3078 14 6 2.2455 -2.8665 -2.3038 15 8 3.5641 -3.0699 -1.7920 16 6 1.7529 0.0972 -2.4090 17 6 2.8084 -0.0895 -3.5117 18 6 2.6919 1.4219 -3.7699 19 6 2.2289 1.5561 -2.3097 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 0.7010 1.1560 3.4844 24 1 1.4523 -2.5195 -0.3312 25 1 0.4042 -1.9558 -1.6549 26 1 1.7605 -3.8313 -2.4521 27 1 2.3028 -2.3385 -3.2558 28 1 4.1357 -3.5901 -2.3731 29 1 0.7271 -0.0041 -2.7630 30 1 3.7847 -0.3941 -3.1346 31 1 2.4654 -0.7026 -4.3451 32 1 1.9232 1.6827 -4.4974 33 1 3.6478 1.9055 -3.9712 34 1 1.4182 2.2717 -2.1726 35 1 3.0459 1.7017 -1.6029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228374405.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:17 Heat of formation + Delta-G solvation = -46.443849 kcal Electronic energy + Delta-G solvation = -15327.929974 eV Core-core repulsion = 12939.884430 eV Total energy + Delta-G solvation = -2388.045544 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.47102 -37.62197 -36.74837 -34.33011 -31.24713 -28.73455 -27.30284 -26.36285 -25.09058 -23.31702 -21.27342 -19.79057 -18.42383 -17.97858 -17.05586 -16.82025 -16.21375 -15.66991 -14.98007 -14.62532 -14.07509 -13.88821 -13.68060 -13.36579 -13.28042 -13.00215 -12.68100 -12.61496 -12.41514 -12.20611 -12.00201 -11.73315 -11.39517 -11.20500 -11.04342 -10.82226 -10.55125 -10.38109 -8.73462 -8.08574 -6.17494 1.40297 1.41126 1.52036 2.43976 3.19783 3.40881 3.64281 3.83554 3.95847 4.06729 4.15215 4.43462 4.48767 4.70414 4.74017 4.78116 4.82852 4.87953 4.92452 5.01891 5.10532 5.12512 5.20041 5.22589 5.45447 5.57812 5.64673 5.75662 5.84911 6.30331 6.57609 6.90556 6.97673 7.19465 7.51198 8.97293 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029862 B = 0.010859 C = 0.009041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.432602 B = 2577.931646 C = 3096.175322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.014 0.986 4 C -0.508 4.508 5 H 0.048 0.952 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.955 3.045 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.273 1.273 12 N -0.519 5.519 13 C 0.058 3.942 14 C 0.087 3.913 15 O -0.579 6.579 16 C 0.043 3.957 17 C -0.111 4.111 18 C -0.125 4.125 19 C -0.136 4.136 20 H 0.027 0.973 21 H 0.059 0.941 22 H 0.022 0.978 23 H 0.260 0.740 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.384 0.616 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -3.840 -12.775 13.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.109 3.891 3 H 0.032 0.968 4 C -0.547 4.547 5 H 0.066 0.934 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.198 1.198 12 N -0.243 5.243 13 C -0.071 4.071 14 C 0.009 3.991 15 O -0.386 6.386 16 C -0.065 4.065 17 C -0.149 4.149 18 C -0.163 4.163 19 C -0.174 4.174 20 H 0.046 0.954 21 H 0.078 0.922 22 H 0.041 0.959 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.232 0.768 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.819 -3.435 -12.094 12.703 hybrid contribution -0.669 -0.419 0.813 1.133 sum 1.150 -3.854 -11.280 11.976 Atomic orbital electron populations 1.22207 1.00661 0.98785 0.99775 1.19039 0.89597 0.93346 0.87168 0.96826 1.21392 1.29883 1.12161 0.91232 0.93367 1.25645 0.95567 0.95941 1.01625 1.70007 1.38077 1.24301 1.23786 0.85606 0.78017 0.79003 0.79275 1.20377 1.20722 1.19758 1.62410 1.58178 1.01806 1.01856 1.22029 0.94656 0.90853 0.99536 1.22272 0.83305 0.97554 0.95939 1.86682 1.24394 1.77256 1.50221 1.23277 0.96869 0.94295 0.92091 1.22914 0.98933 0.96492 0.96588 1.22731 1.02085 0.96456 0.95029 1.22917 1.00373 0.95885 0.98239 0.95366 0.92205 0.95899 0.93100 0.92851 0.94302 0.92443 0.92099 0.76789 0.92854 0.90610 0.90262 0.88705 0.90415 0.92861 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.76 8.31 71.98 0.60 -7.16 16 2 C 0.22 11.31 2.13 44.17 0.09 11.40 16 3 H 0.01 0.80 6.40 -2.39 -0.02 0.79 16 4 C -0.51 -29.43 7.73 25.60 0.20 -29.23 16 5 H 0.05 2.89 7.26 -2.91 -0.02 2.87 16 6 C 0.01 0.58 5.30 84.66 0.45 1.03 16 7 N -0.92 -54.54 11.31 21.45 0.24 -54.30 16 8 Si 0.95 45.84 29.54 68.60 2.03 47.87 16 9 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 12 N -0.52 -22.77 4.35 -847.24 -3.69 -26.46 16 13 C 0.06 2.30 4.04 86.30 0.35 2.65 16 14 C 0.09 2.65 6.97 71.98 0.50 3.15 16 15 O -0.58 -19.18 13.61 -148.98 -2.03 -21.20 16 16 C 0.04 1.56 2.37 45.44 0.11 1.66 16 17 C -0.11 -3.14 5.98 31.12 0.19 -2.96 16 18 C -0.13 -3.22 8.08 31.12 0.25 -2.97 16 19 C -0.14 -4.79 6.37 31.12 0.20 -4.59 16 20 H 0.03 1.35 6.70 -2.39 -0.02 1.34 16 21 H 0.06 3.33 6.06 -2.39 -0.01 3.32 16 22 H 0.02 1.01 7.25 -2.38 -0.02 0.99 16 23 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 24 H 0.05 2.49 6.59 -2.39 -0.02 2.48 16 25 H 0.04 1.46 7.01 -2.39 -0.02 1.45 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.61 5.32 -2.38 -0.01 1.60 16 28 H 0.38 8.08 9.12 -74.06 -0.68 7.41 16 29 H 0.05 1.88 7.54 -2.39 -0.02 1.86 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.08 1.82 7.40 -2.39 -0.02 1.80 16 32 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.06 2.52 7.64 -2.38 -0.02 2.50 16 Total: -1.00 -66.28 270.71 -0.12 -66.40 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.39 Total: 14.72 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 2.93 Total: -27.03 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -3.45 Total: -80.76 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -2.03 Total: -21.20 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -66.28 -0.12 -66.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228374405.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.956 kcal (2) G-P(sol) polarization free energy of solvation -66.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds