Wall clock time and date at job start Mon Mar 30 2020 20:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47232 * 2 1 4 4 C 1.50699 * 109.46728 * 120.00098 * 2 1 3 5 5 H 1.08006 * 119.99508 * 120.00039 * 4 2 1 6 6 C 1.37869 * 120.00066 * 299.99933 * 4 2 1 7 7 N 1.31512 * 120.00561 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 120.00053 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46792 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47112 * 119.99740 * 8 6 4 11 11 H 1.48504 * 109.46983 * 239.99918 * 8 6 4 12 12 N 1.46900 * 109.46846 * 239.99976 * 2 1 3 13 13 C 1.46902 * 111.00394 * 306.04618 * 12 2 1 14 14 C 1.46900 * 111.00056 * 70.00420 * 12 2 1 15 15 H 1.08998 * 109.52259 * 299.87081 * 14 12 2 16 16 C 1.53176 * 109.52365 * 179.68158 * 14 12 2 17 17 C 1.53183 * 109.03838 * 183.11145 * 16 14 12 18 18 C 1.53094 * 109.15859 * 56.98139 * 17 16 14 19 19 O 1.42902 * 109.42545 * 302.39685 * 18 17 16 20 20 C 1.42904 * 114.09961 * 61.14161 * 19 18 17 21 21 H 1.08998 * 109.47427 * 300.00213 * 1 2 3 22 22 H 1.09006 * 109.46967 * 59.99605 * 1 2 3 23 23 H 1.08998 * 109.47674 * 179.97438 * 1 2 3 24 24 H 0.96998 * 120.00408 * 179.97438 * 7 6 4 25 25 H 1.08992 * 109.47401 * 183.95577 * 13 12 2 26 26 H 1.08999 * 109.46870 * 303.95530 * 13 12 2 27 27 H 1.09005 * 109.46542 * 63.95628 * 13 12 2 28 28 H 1.09002 * 109.54544 * 302.98189 * 16 14 12 29 29 H 1.09000 * 109.54423 * 63.15831 * 16 14 12 30 30 H 1.08997 * 109.51813 * 176.88468 * 17 16 14 31 31 H 1.08998 * 109.52255 * 297.01444 * 17 16 14 32 32 H 1.09000 * 109.47974 * 62.37640 * 18 17 16 33 33 H 1.09001 * 109.47833 * 182.40980 * 18 17 16 34 34 H 1.09002 * 109.48241 * 178.87096 * 20 19 18 35 35 H 1.08999 * 109.47648 * 58.84690 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3223 -1.1197 4.0080 9 1 3.1472 -2.2865 3.6037 10 1 3.1471 -0.1860 4.8161 11 1 1.1675 -1.5867 4.8165 12 7 2.0196 -0.6925 -1.1995 13 6 1.4343 -2.0355 -1.3079 14 6 1.7529 0.0972 -2.4090 15 1 0.6792 0.2537 -2.5125 16 6 2.2831 -0.6508 -3.6361 17 6 2.0696 0.2162 -4.8807 18 6 2.7637 1.5656 -4.6782 19 8 2.2465 2.1946 -3.5039 20 6 2.4593 1.4513 -2.3020 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7089 1.1613 3.4844 25 1 1.8663 -2.5521 -2.1648 26 1 1.6466 -2.5988 -0.3992 27 1 0.3555 -1.9520 -1.4400 28 1 3.3471 -0.8512 -3.5094 29 1 1.7457 -1.5924 -3.7494 30 1 2.4940 -0.2848 -5.7507 31 1 1.0023 0.3741 -5.0359 32 1 3.8363 1.4091 -4.5642 33 1 2.5790 2.2027 -5.5431 34 1 2.0553 2.0061 -1.4551 35 1 3.5279 1.2933 -2.1567 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230075231.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:28 Heat of formation + Delta-G solvation = -63.632578 kcal Electronic energy + Delta-G solvation = -15273.377368 eV Core-core repulsion = 12884.586465 eV Total energy + Delta-G solvation = -2388.790903 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.70193 -38.33092 -35.09710 -33.75377 -31.43603 -30.18782 -27.32092 -26.93556 -25.18605 -24.01330 -21.70510 -20.37052 -18.38676 -17.33836 -17.04945 -16.88679 -15.87908 -15.75856 -15.54087 -14.84010 -14.50567 -14.22607 -13.94125 -13.57476 -13.24972 -12.97093 -12.85633 -12.55086 -12.41936 -12.20729 -12.15512 -12.03989 -11.89033 -11.47213 -11.13252 -10.86769 -10.48895 -10.34116 -8.88704 -8.10072 -6.20787 1.41763 1.43766 1.55415 2.43114 2.86804 3.18964 3.44319 3.84788 3.93372 4.04409 4.19555 4.30014 4.51012 4.58977 4.67542 4.72782 4.78588 4.83908 4.86659 4.93367 5.00858 5.04325 5.13023 5.18252 5.23491 5.38176 5.52930 5.69475 5.79212 6.19631 6.25826 6.47533 6.74575 6.92723 7.48369 8.96305 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049923 B = 0.008219 C = 0.007783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.724953 B = 3406.129956 C = 3596.916508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.209 3.791 3 H 0.016 0.984 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.536 5.536 13 C 0.038 3.962 14 C 0.052 3.948 15 H 0.025 0.975 16 C -0.111 4.111 17 C -0.146 4.146 18 C 0.049 3.951 19 O -0.404 6.404 20 C 0.076 3.924 21 H 0.061 0.939 22 H 0.017 0.983 23 H 0.033 0.967 24 H 0.261 0.739 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.014 0.986 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 -2.462 -12.843 13.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.102 3.898 3 H 0.034 0.966 4 C -0.550 4.550 5 H 0.076 0.924 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.261 5.261 13 C -0.111 4.111 14 C -0.058 4.058 15 H 0.043 0.957 16 C -0.149 4.149 17 C -0.184 4.184 18 C -0.027 4.027 19 O -0.322 6.322 20 C -0.001 4.001 21 H 0.080 0.920 22 H 0.036 0.964 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.770 -2.222 -12.680 13.168 hybrid contribution -0.783 -0.299 1.207 1.469 sum 1.987 -2.520 -11.473 11.914 Atomic orbital electron populations 1.22197 1.00756 0.99126 0.99622 1.19158 0.89759 0.93521 0.87334 0.96616 1.21406 1.30403 1.12412 0.90826 0.92443 1.25702 0.95456 0.95834 1.01882 1.70022 1.38026 1.24253 1.23924 0.85481 0.78023 0.78640 0.79312 1.19145 1.20791 1.20769 1.62291 1.58898 1.03142 1.01772 1.22242 0.96222 0.90769 1.01818 1.22178 0.97172 0.94459 0.91944 0.95733 1.21690 1.01898 0.98651 0.92639 1.22178 1.01772 0.96165 0.98312 1.22871 0.97513 0.94658 0.87644 1.87901 1.81375 1.46843 1.16085 1.22444 0.99435 0.91790 0.86397 0.92030 0.96358 0.94821 0.93016 0.90362 0.92519 0.96733 0.91032 0.90766 0.87872 0.91710 0.92402 0.86837 0.91138 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.88 8.22 71.98 0.59 -7.29 16 2 C 0.21 10.68 2.12 44.17 0.09 10.77 16 3 H 0.02 0.90 5.88 -2.39 -0.01 0.89 16 4 C -0.51 -28.25 7.91 25.60 0.20 -28.04 16 5 H 0.06 3.16 7.12 -2.91 -0.02 3.14 16 6 C 0.01 0.53 5.30 84.65 0.45 0.97 16 7 N -0.92 -53.50 11.32 21.44 0.24 -53.25 16 8 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 N -0.54 -22.84 4.57 -875.67 -4.00 -26.85 16 13 C 0.04 1.43 8.25 127.69 1.05 2.48 16 14 C 0.05 1.89 1.93 45.01 0.09 1.98 16 15 H 0.02 0.99 6.63 -2.39 -0.02 0.97 16 16 C -0.11 -3.07 4.85 30.71 0.15 -2.92 16 17 C -0.15 -3.21 6.14 30.69 0.19 -3.03 16 18 C 0.05 1.17 6.84 72.01 0.49 1.66 16 19 O -0.40 -13.58 10.77 -148.98 -1.60 -15.18 16 20 C 0.08 2.87 5.84 72.01 0.42 3.29 16 21 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 22 H 0.02 0.83 6.69 -2.38 -0.02 0.81 16 23 H 0.03 1.61 6.41 -2.39 -0.02 1.59 16 24 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 25 H 0.08 2.43 6.32 -2.39 -0.02 2.42 16 26 H 0.06 2.33 6.76 -2.39 -0.02 2.32 16 27 H 0.01 0.55 6.46 -2.38 -0.02 0.53 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.07 1.91 6.55 -2.39 -0.02 1.89 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.07 3.04 6.34 -2.39 -0.02 3.03 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -61.05 263.31 1.45 -59.61 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 1.06 Total: 9.83 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 3.73 Total: -20.12 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -3.76 Total: -80.10 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -1.60 Total: -15.18 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -61.05 1.45 -59.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230075231.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.027 kcal (2) G-P(sol) polarization free energy of solvation -61.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds