Wall clock time and date at job start Mon Mar 30 2020 20:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47110 * 2 1 4 4 C 1.42899 * 113.99955 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.84795 * 21.69888 * 4 3 2 6 6 C 1.53772 * 113.61924 * 250.49730 * 4 3 2 7 7 C 1.53781 * 87.08731 * 219.93677 * 6 4 3 8 8 H 1.08991 * 113.61508 * 140.06112 * 7 6 4 9 9 N 1.46500 * 113.61287 * 270.88754 * 7 6 4 10 10 C 1.36935 * 119.99795 * 255.48582 * 9 7 6 11 11 H 1.08006 * 119.99956 * 0.02562 * 10 9 7 12 12 C 1.38809 * 120.00104 * 180.02562 * 10 9 7 13 13 N 1.31615 * 120.00002 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00116 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99934 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99927 * 14 12 10 18 18 C 1.53779 * 113.68748 * 152.95933 * 4 3 2 19 19 C 1.53001 * 113.61489 * 25.45363 * 18 4 3 20 20 C 1.52995 * 113.61825 * 254.54200 * 18 4 3 21 21 H 1.08999 * 109.47132 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46984 * 299.99641 * 1 2 3 23 23 H 1.08994 * 109.47360 * 59.99926 * 1 2 3 24 24 H 1.09002 * 109.46984 * 240.00359 * 2 1 3 25 25 H 1.09001 * 109.47735 * 120.00611 * 2 1 3 26 26 H 1.09004 * 113.61667 * 105.39009 * 6 4 3 27 27 H 1.08999 * 113.69421 * 334.49958 * 6 4 3 28 28 H 0.96997 * 120.00022 * 75.49056 * 9 7 6 29 29 H 0.97004 * 120.00335 * 0.02562 * 13 12 10 30 30 H 1.09005 * 109.47311 * 157.49329 * 19 18 4 31 31 H 1.09006 * 109.46880 * 277.49212 * 19 18 4 32 32 H 1.09000 * 109.47423 * 37.48709 * 19 18 4 33 33 H 1.08996 * 109.47550 * 322.50478 * 20 18 4 34 34 H 1.08999 * 109.46785 * 82.50752 * 20 18 4 35 35 H 1.09001 * 109.47357 * 202.50541 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9266 0.5631 -0.3705 6 6 4.0073 1.9778 1.3288 7 6 4.9930 2.8060 0.4877 8 1 5.1684 3.8073 0.8809 9 7 6.2333 2.0949 0.1681 10 6 7.3907 2.4052 0.8308 11 1 7.3891 3.1740 1.5894 12 6 8.5660 1.7318 0.5275 13 7 8.5681 0.7953 -0.3972 14 14 10.1447 2.1547 1.4320 15 1 9.8776 3.2345 2.4159 16 1 11.1656 2.6156 0.4570 17 1 10.6463 0.9507 2.1419 18 6 3.9479 2.7592 -0.6396 19 6 2.9410 3.9100 -0.5899 20 6 4.5547 2.5582 -2.0297 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 4.4875 1.2039 1.9277 27 1 3.3071 2.5841 1.9035 28 1 6.2346 1.4042 -0.5130 29 1 7.7484 0.5759 -0.8673 30 1 3.4697 4.8594 -0.6757 31 1 2.2354 3.8113 -1.4149 32 1 2.4004 3.8793 0.3561 33 1 5.1022 1.6161 -2.0544 34 1 3.7585 2.5354 -2.7737 35 1 5.2356 3.3800 -2.2512 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233779844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:54 Heat of formation + Delta-G solvation = -24.988317 kcal Electronic energy + Delta-G solvation = -14933.381492 eV Core-core repulsion = 12546.266329 eV Total energy + Delta-G solvation = -2387.115162 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.72015 -36.57727 -33.76290 -30.98117 -30.47045 -29.01653 -26.94296 -24.06399 -22.95866 -22.44516 -21.66523 -17.86592 -17.44183 -16.35065 -15.44834 -14.98756 -14.69565 -13.94134 -13.58836 -13.32265 -12.80016 -12.72018 -12.52236 -12.13462 -11.84208 -11.73392 -11.56713 -11.04478 -10.99106 -10.81881 -10.70418 -10.26441 -10.11015 -9.99367 -9.59779 -9.15069 -8.88469 -8.86260 -7.05063 -6.12913 -3.12773 3.51475 3.57788 3.67480 3.98135 4.64256 4.94857 5.04800 5.17161 5.21211 5.32099 5.46709 5.47854 5.64968 5.65950 5.72971 5.84542 5.91729 5.94599 6.08887 6.11486 6.18720 6.27502 6.35622 6.43599 6.45198 6.59343 6.79190 6.92064 6.99296 7.61559 7.83295 8.72730 9.20065 10.06240 10.21109 11.35197 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.044276 B = 0.007390 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.242209 B = 3788.109458 C = 3959.194968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.376 6.376 4 C 0.076 3.924 5 H 0.079 0.921 6 C -0.188 4.188 7 C 0.182 3.818 8 H 0.068 0.932 9 N -0.717 5.717 10 C -0.331 4.331 11 H 0.067 0.933 12 C -0.045 4.045 13 N -0.945 5.945 14 Si 1.086 2.914 15 H -0.294 1.294 16 H -0.293 1.293 17 H -0.293 1.293 18 C -0.099 4.099 19 C -0.110 4.110 20 C -0.126 4.126 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.368 0.632 29 H 0.254 0.746 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.151 1.270 -0.095 13.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.296 6.296 4 C 0.018 3.982 5 H 0.097 0.903 6 C -0.229 4.229 7 C 0.069 3.931 8 H 0.086 0.914 9 N -0.357 5.357 10 C -0.462 4.462 11 H 0.085 0.915 12 C -0.242 4.242 13 N -0.590 5.590 14 Si 0.917 3.083 15 H -0.221 1.221 16 H -0.220 1.220 17 H -0.220 1.220 18 C -0.101 4.101 19 C -0.168 4.168 20 C -0.183 4.183 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.203 0.797 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.586 1.236 0.211 11.654 hybrid contribution -1.520 -0.243 -0.285 1.565 sum -13.106 0.993 -0.074 13.144 Atomic orbital electron populations 1.21724 0.94326 1.01741 1.02776 1.22413 0.95021 0.84989 0.99756 1.87894 1.21765 1.25171 1.94734 1.23838 0.79446 0.97288 0.97619 0.90335 1.24286 0.99955 1.01692 0.97017 1.20958 0.84936 0.94969 0.92192 0.91418 1.42233 1.04334 1.43564 1.45601 1.20155 0.88454 1.19657 1.17943 0.91481 1.25791 1.00967 0.97088 1.00366 1.70828 1.29589 1.32622 1.25951 0.83135 0.75032 0.75160 0.74936 1.22062 1.21995 1.22029 1.22689 0.96543 0.94661 0.96187 1.21317 0.97469 0.96183 1.01809 1.21563 0.99597 1.02186 0.94975 0.91587 0.92077 0.92118 0.93856 0.93765 0.91566 0.90575 0.79710 0.93447 0.92997 0.92933 0.92358 0.92721 0.93686 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 2 C 0.06 0.74 6.51 37.16 0.24 0.98 16 3 O -0.38 -6.14 9.45 -35.23 -0.33 -6.47 16 4 C 0.08 1.34 3.59 -25.92 -0.09 1.24 16 5 H 0.08 1.46 7.71 -51.93 -0.40 1.06 16 6 C -0.19 -3.57 7.36 -25.92 -0.19 -3.76 16 7 C 0.18 3.79 4.01 -67.11 -0.27 3.52 16 8 H 0.07 1.44 8.08 -51.93 -0.42 1.02 16 9 N -0.72 -18.02 4.86 -52.63 -0.26 -18.27 16 10 C -0.33 -9.33 9.97 -15.06 -0.15 -9.48 16 11 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 12 C -0.04 -1.30 5.50 -17.43 -0.10 -1.40 16 13 N -0.94 -29.18 13.70 55.49 0.76 -28.42 16 14 Si 1.09 26.08 29.92 -169.99 -5.09 21.00 16 15 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 C -0.10 -1.76 1.34 -153.69 -0.21 -1.96 16 19 C -0.11 -1.70 8.46 37.16 0.31 -1.38 16 20 C -0.13 -2.22 8.58 37.16 0.32 -1.91 16 21 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.08 1.33 7.66 -51.93 -0.40 0.93 16 28 H 0.37 9.47 5.10 -40.82 -0.21 9.26 16 29 H 0.25 7.74 6.78 -40.82 -0.28 7.46 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.89 7.19 -51.93 -0.37 0.51 16 33 H 0.05 1.03 6.58 -51.93 -0.34 0.69 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 283.19 15.07 4.27 4.27 Total: -1.00 -30.55 283.19 -6.25 -36.79 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.85 Total: 6.45 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 0.25 Total: -15.34 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.50 Total: -46.69 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.33 Total: -6.47 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.09 Total: 21.00 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.55 -6.25 -36.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233779844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.804 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds