Wall clock time and date at job start Mon Mar 30 2020 20:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47110 * 2 1 4 4 C 1.42899 * 113.99955 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.84795 * 21.69888 * 4 3 2 6 6 C 1.53772 * 113.61924 * 250.49730 * 4 3 2 7 7 C 1.53781 * 87.08731 * 219.93677 * 6 4 3 8 8 H 1.08991 * 113.61508 * 140.06112 * 7 6 4 9 9 N 1.46500 * 113.61287 * 270.88754 * 7 6 4 10 10 C 1.36935 * 119.99795 * 255.48582 * 9 7 6 11 11 H 1.08006 * 119.99956 * 0.02562 * 10 9 7 12 12 C 1.38809 * 120.00104 * 180.02562 * 10 9 7 13 13 N 1.31615 * 120.00002 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00116 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99934 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99927 * 14 12 10 18 18 C 1.53779 * 113.68748 * 152.95933 * 4 3 2 19 19 C 1.53001 * 113.61489 * 25.45363 * 18 4 3 20 20 C 1.52995 * 113.61825 * 254.54200 * 18 4 3 21 21 H 1.08999 * 109.47132 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46984 * 299.99641 * 1 2 3 23 23 H 1.08994 * 109.47360 * 59.99926 * 1 2 3 24 24 H 1.09002 * 109.46984 * 240.00359 * 2 1 3 25 25 H 1.09001 * 109.47735 * 120.00611 * 2 1 3 26 26 H 1.09004 * 113.61667 * 105.39009 * 6 4 3 27 27 H 1.08999 * 113.69421 * 334.49958 * 6 4 3 28 28 H 0.96997 * 120.00022 * 75.49056 * 9 7 6 29 29 H 0.97004 * 120.00335 * 0.02562 * 13 12 10 30 30 H 1.09005 * 109.47311 * 157.49329 * 19 18 4 31 31 H 1.09006 * 109.46880 * 277.49212 * 19 18 4 32 32 H 1.09000 * 109.47423 * 37.48709 * 19 18 4 33 33 H 1.08996 * 109.47550 * 322.50478 * 20 18 4 34 34 H 1.08999 * 109.46785 * 82.50752 * 20 18 4 35 35 H 1.09001 * 109.47357 * 202.50541 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9266 0.5631 -0.3705 6 6 4.0073 1.9778 1.3288 7 6 4.9930 2.8060 0.4877 8 1 5.1684 3.8073 0.8809 9 7 6.2333 2.0949 0.1681 10 6 7.3907 2.4052 0.8308 11 1 7.3891 3.1740 1.5894 12 6 8.5660 1.7318 0.5275 13 7 8.5681 0.7953 -0.3972 14 14 10.1447 2.1547 1.4320 15 1 9.8776 3.2345 2.4159 16 1 11.1656 2.6156 0.4570 17 1 10.6463 0.9507 2.1419 18 6 3.9479 2.7592 -0.6396 19 6 2.9410 3.9100 -0.5899 20 6 4.5547 2.5582 -2.0297 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 4.4875 1.2039 1.9277 27 1 3.3071 2.5841 1.9035 28 1 6.2346 1.4042 -0.5130 29 1 7.7484 0.5759 -0.8673 30 1 3.4697 4.8594 -0.6757 31 1 2.2354 3.8113 -1.4149 32 1 2.4004 3.8793 0.3561 33 1 5.1022 1.6161 -2.0544 34 1 3.7585 2.5354 -2.7737 35 1 5.2356 3.3800 -2.2512 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233779844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:54 Heat of formation + Delta-G solvation = -43.870526 kcal Electronic energy + Delta-G solvation = -14934.200286 eV Core-core repulsion = 12546.266329 eV Total energy + Delta-G solvation = -2387.933956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.22215 -37.91889 -35.75516 -32.30120 -32.00117 -30.69229 -28.31293 -26.01323 -24.54826 -23.62086 -23.21902 -19.53128 -19.38180 -17.73799 -16.85316 -16.51100 -16.10901 -15.83672 -15.36402 -14.74013 -14.26475 -14.15786 -13.68317 -13.35046 -13.11929 -13.01721 -12.96475 -12.74984 -12.66441 -12.27404 -12.18346 -11.89051 -11.74902 -11.57000 -11.36391 -10.96090 -10.84832 -10.25020 -9.12892 -8.41592 -5.35395 1.58155 1.69350 1.81404 2.68715 2.74445 3.36443 3.47559 3.59509 3.71524 3.99322 4.06901 4.17672 4.30234 4.38488 4.40529 4.47551 4.65807 4.77578 4.79961 4.89194 4.92850 5.00874 5.02713 5.04949 5.14051 5.21192 5.26647 5.43082 5.54561 5.62595 6.32353 6.46994 7.06956 7.97273 8.08816 9.10046 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.044276 B = 0.007390 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.242209 B = 3788.109458 C = 3959.194968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 O -0.379 6.379 4 C 0.086 3.914 5 H 0.065 0.935 6 C -0.179 4.179 7 C 0.163 3.837 8 H 0.063 0.937 9 N -0.729 5.729 10 C -0.330 4.330 11 H 0.067 0.933 12 C -0.103 4.103 13 N -0.976 5.976 14 Si 1.133 2.867 15 H -0.272 1.272 16 H -0.290 1.290 17 H -0.292 1.292 18 C -0.088 4.088 19 C -0.104 4.104 20 C -0.122 4.122 21 H 0.088 0.912 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.095 0.905 28 H 0.362 0.638 29 H 0.243 0.757 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.550 1.952 0.199 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 O -0.298 6.298 4 C 0.028 3.972 5 H 0.083 0.917 6 C -0.219 4.219 7 C 0.053 3.947 8 H 0.081 0.919 9 N -0.369 5.369 10 C -0.462 4.462 11 H 0.085 0.915 12 C -0.294 4.294 13 N -0.624 5.624 14 Si 0.958 3.042 15 H -0.197 1.197 16 H -0.217 1.217 17 H -0.219 1.219 18 C -0.090 4.090 19 C -0.162 4.162 20 C -0.179 4.179 21 H 0.107 0.893 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.113 0.887 28 H 0.196 0.804 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.048 1.941 0.517 13.202 hybrid contribution -1.194 -0.457 -0.364 1.329 sum -14.243 1.484 0.153 14.321 Atomic orbital electron populations 1.21716 0.91862 1.03350 1.02952 1.22688 0.97001 0.83628 0.99888 1.87876 1.20268 1.27021 1.94663 1.23536 0.80505 0.96729 0.96409 0.91747 1.24160 0.99534 1.00906 0.97343 1.21204 0.84434 0.94457 0.94625 0.91935 1.42336 1.05145 1.43998 1.45441 1.20473 0.89567 1.18782 1.17353 0.91487 1.27195 1.04383 0.96962 1.00859 1.70941 1.29176 1.34544 1.27704 0.82539 0.71673 0.75579 0.74392 1.19654 1.21721 1.21852 1.22614 0.95696 0.95746 0.94941 1.21300 0.96986 0.95230 1.02671 1.21514 0.99985 1.00637 0.95771 0.89316 0.91984 0.91813 0.93527 0.93954 0.93704 0.88662 0.80408 0.94659 0.92221 0.91405 0.91979 0.94727 0.91107 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 10.28 71.98 0.74 -1.91 16 2 C 0.04 1.12 6.51 71.98 0.47 1.58 16 3 O -0.38 -11.60 9.45 -148.98 -1.41 -13.01 16 4 C 0.09 2.98 3.59 31.12 0.11 3.09 16 5 H 0.06 2.41 7.71 -2.39 -0.02 2.39 16 6 C -0.18 -6.66 7.36 31.12 0.23 -6.43 16 7 C 0.16 6.77 4.01 45.52 0.18 6.95 16 8 H 0.06 2.63 8.08 -2.39 -0.02 2.61 16 9 N -0.73 -37.25 4.86 -320.44 -1.56 -38.81 16 10 C -0.33 -18.78 9.97 84.03 0.84 -17.94 16 11 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 12 C -0.10 -6.02 5.50 84.86 0.47 -5.55 16 13 N -0.98 -61.47 13.70 21.65 0.30 -61.17 16 14 Si 1.13 52.51 29.92 68.60 2.05 54.56 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 16 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 18 C -0.09 -3.03 1.34 -51.65 -0.07 -3.10 16 19 C -0.10 -2.94 8.46 71.98 0.61 -2.33 16 20 C -0.12 -4.22 8.58 71.98 0.62 -3.60 16 21 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 22 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.04 1.07 8.14 -2.39 -0.02 1.06 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.10 3.17 7.66 -2.39 -0.02 3.15 16 28 H 0.36 19.24 5.10 -92.71 -0.47 18.77 16 29 H 0.24 15.29 6.78 -92.70 -0.63 14.66 16 30 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.06 1.71 7.19 -2.39 -0.02 1.69 16 33 H 0.03 1.32 6.58 -2.39 -0.02 1.30 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -64.96 283.19 4.29 -60.67 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.71 Total: 27.00 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 4.19 Total: -29.24 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -1.26 Total: -99.98 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -1.41 Total: -13.01 kcal Atomic # 14 Polarization: 52.51 SS G_CDS: 2.05 Total: 54.56 kcal Total: -64.96 4.29 -60.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233779844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.797 kcal (2) G-P(sol) polarization free energy of solvation -64.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds