Wall clock time and date at job start Mon Mar 30 2020 20:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 119.99916 * 2 1 4 4 H 1.08008 * 120.00066 * 203.15134 * 3 2 1 5 5 C 1.38808 * 120.00164 * 23.15739 * 3 2 1 6 6 N 1.31623 * 120.00217 * 14.00243 * 5 3 2 7 7 Si 1.86800 * 120.00106 * 194.00773 * 5 3 2 8 8 H 1.48493 * 109.47126 * 59.99715 * 7 5 3 9 9 H 1.48497 * 109.47309 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47243 * 299.99739 * 7 5 3 11 11 C 1.46503 * 119.99667 * 180.02562 * 2 1 3 12 12 H 1.09006 * 109.62073 * 180.38496 * 11 2 1 13 13 C 1.54240 * 109.62675 * 60.00454 * 11 2 1 14 14 C 1.45544 * 112.40482 * 160.29899 * 13 11 2 15 15 C 1.54245 * 112.40516 * 61.93299 * 14 13 11 16 16 C 1.50472 * 108.52331 * 280.01240 * 15 14 13 17 17 C 1.54064 * 112.49434 * 94.15082 * 16 15 14 18 18 C 1.50468 * 109.62946 * 300.97362 * 11 2 1 19 19 H 1.09001 * 108.87623 * 93.08587 * 18 11 2 20 20 O 1.42895 * 108.87571 * 334.63874 * 18 11 2 21 21 H 1.08993 * 109.47167 * 275.16979 * 1 2 3 22 22 H 1.09006 * 109.46963 * 35.16792 * 1 2 3 23 23 H 1.09004 * 109.47048 * 155.16612 * 1 2 3 24 24 H 0.97000 * 120.00147 * 179.97438 * 6 5 3 25 25 H 1.08995 * 108.89431 * 281.04968 * 13 11 2 26 26 H 1.08994 * 108.89991 * 39.54754 * 13 11 2 27 27 H 1.09000 * 108.89637 * 182.68863 * 14 13 11 28 28 H 1.09007 * 108.89670 * 301.27571 * 14 13 11 29 29 H 1.08999 * 109.62837 * 39.72682 * 15 14 13 30 30 H 1.09002 * 109.62578 * 160.11004 * 15 14 13 31 31 H 1.08997 * 108.87922 * 214.92504 * 16 15 14 32 32 H 1.08999 * 108.87752 * 333.47566 * 16 15 14 33 33 H 1.09007 * 108.81572 * 79.14594 * 17 16 15 34 34 H 1.08997 * 108.81486 * 197.52975 * 17 16 15 35 35 H 0.96709 * 113.99475 * 180.02562 * 20 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1645 1.2236 -0.3678 5 6 1.5395 2.3396 0.4727 6 7 0.4249 2.2571 1.1679 7 14 2.3002 4.0093 0.1222 8 1 2.3771 4.2198 -1.3458 9 1 1.4617 5.0729 0.7310 10 1 3.6663 4.0626 0.7021 11 6 2.1975 -1.2688 -0.0006 12 1 3.2697 -1.0725 0.0064 13 6 1.8275 -2.0800 -1.2591 14 6 2.8154 -3.1025 -1.5704 15 6 2.9492 -4.1518 -0.4478 16 6 3.8155 -3.5791 0.6411 17 6 2.9926 -2.9084 1.7576 18 6 1.8185 -2.0718 1.2142 19 1 0.9994 -2.7417 0.9527 20 8 1.3739 -1.1794 2.2379 21 1 -0.3633 0.0926 1.0234 22 1 -0.3633 0.8401 -0.5919 23 1 -0.3633 -0.9327 -0.4316 24 1 -0.0012 3.0633 1.4986 25 1 0.8619 -2.5595 -1.0988 26 1 1.7452 -1.3993 -2.1064 27 1 2.5236 -3.6065 -2.4917 28 1 3.7831 -2.6240 -1.7216 29 1 1.9634 -4.3861 -0.0462 30 1 3.4072 -5.0573 -0.8458 31 1 4.4119 -4.3812 1.0759 32 1 4.4858 -2.8382 0.2055 33 1 2.5978 -3.6820 2.4164 34 1 3.6487 -2.2571 2.3350 35 1 1.1107 -1.6208 3.0572 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250386717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:21 Heat of formation + Delta-G solvation = -31.924437 kcal Electronic energy + Delta-G solvation = -15575.396408 eV Core-core repulsion = 13187.980473 eV Total energy + Delta-G solvation = -2387.415935 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.93411 -35.28467 -34.69075 -31.82596 -30.73001 -28.73759 -25.72521 -24.47310 -23.52929 -21.62754 -19.90635 -18.48170 -16.72301 -16.20397 -15.18612 -14.72527 -14.23522 -14.02016 -13.58796 -13.08468 -12.84357 -12.33766 -12.22176 -12.02593 -11.22074 -11.09971 -10.84756 -10.65052 -10.48407 -10.44450 -10.26227 -10.18981 -9.96885 -9.92066 -9.65688 -9.37970 -8.90673 -8.32664 -6.46422 -5.47911 -2.92412 3.49932 3.54597 3.55654 4.64603 4.94655 4.97699 5.08892 5.32148 5.50705 5.56856 5.67091 5.69299 5.76376 5.90414 5.98566 6.03028 6.25377 6.28622 6.40642 6.44189 6.53029 6.63876 6.70541 6.73464 6.92551 7.01239 7.12403 7.57941 7.96674 8.08294 8.57092 8.67248 9.46944 10.11940 10.62378 11.55706 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040631 B = 0.009868 C = 0.009432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.970869 B = 2836.889992 C = 2967.846977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.576 5.576 3 C -0.246 4.246 4 H 0.062 0.938 5 C 0.002 3.998 6 N -0.899 5.899 7 Si 0.898 3.102 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.286 1.286 11 C 0.187 3.813 12 H 0.065 0.935 13 C -0.135 4.135 14 C -0.111 4.111 15 C -0.118 4.118 16 C -0.114 4.114 17 C -0.148 4.148 18 C 0.093 3.907 19 H 0.031 0.969 20 O -0.519 6.519 21 H 0.038 0.962 22 H 0.031 0.969 23 H -0.010 1.010 24 H 0.247 0.753 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 -12.045 -1.431 12.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.297 5.297 3 C -0.376 4.376 4 H 0.080 0.920 5 C -0.196 4.196 6 N -0.544 5.544 7 Si 0.728 3.272 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.212 1.212 11 C 0.078 3.922 12 H 0.083 0.917 13 C -0.175 4.175 14 C -0.149 4.149 15 C -0.156 4.156 16 C -0.151 4.151 17 C -0.187 4.187 18 C 0.031 3.969 19 H 0.049 0.951 20 O -0.319 6.319 21 H 0.057 0.943 22 H 0.050 0.950 23 H 0.009 0.991 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.454 -11.412 -1.828 12.063 hybrid contribution 0.244 0.423 0.428 0.649 sum 3.698 -10.989 -1.400 11.679 Atomic orbital electron populations 1.20684 0.82850 0.94277 0.99598 1.43641 1.01541 0.99558 1.84953 1.19087 0.98298 0.85511 1.34724 0.92000 1.24972 0.98268 0.98035 0.98320 1.70102 1.20078 1.26483 1.37706 0.86450 0.78371 0.84627 0.77734 1.21373 1.21838 1.21212 1.20064 0.96318 0.86624 0.89216 0.91705 1.21018 0.98328 0.97587 1.00582 1.20471 1.00316 0.96567 0.97529 1.21368 1.00276 0.97738 0.96202 1.21249 0.98203 0.99456 0.96208 1.22695 0.98940 0.98956 0.98102 1.22327 0.93160 0.90476 0.90949 0.95138 1.87157 1.86485 1.34108 1.24182 0.94335 0.95047 0.99144 0.94225 0.93210 0.91581 0.93069 0.92339 0.91933 0.92525 0.92906 0.91807 0.93237 0.91569 0.81078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.46 7.84 59.85 0.47 4.93 16 2 N -0.58 -15.12 2.12 -174.18 -0.37 -15.49 16 3 C -0.25 -7.12 9.58 -15.06 -0.14 -7.26 16 4 H 0.06 1.75 7.84 -52.48 -0.41 1.34 16 5 C 0.00 0.07 5.08 -17.43 -0.09 -0.02 16 6 N -0.90 -27.49 10.78 55.49 0.60 -26.89 16 7 Si 0.90 22.83 29.58 -169.99 -5.03 17.80 16 8 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 9 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 C 0.19 3.98 2.18 -68.54 -0.15 3.83 16 12 H 0.06 1.43 6.73 -51.93 -0.35 1.08 16 13 C -0.14 -2.42 4.16 -29.60 -0.12 -2.54 16 14 C -0.11 -1.58 5.27 -29.60 -0.16 -1.74 16 15 C -0.12 -1.51 5.61 -27.34 -0.15 -1.67 16 16 C -0.11 -1.52 5.32 -27.44 -0.15 -1.67 16 17 C -0.15 -2.27 5.43 -25.62 -0.14 -2.41 16 18 C 0.09 1.75 2.47 -27.44 -0.07 1.69 16 19 H 0.03 0.56 6.63 -51.93 -0.34 0.22 16 20 O -0.52 -11.44 11.19 -35.23 -0.39 -11.84 16 21 H 0.04 1.10 6.69 -51.93 -0.35 0.75 16 22 H 0.03 0.87 7.38 -51.93 -0.38 0.49 16 23 H -0.01 -0.23 6.89 -51.93 -0.36 -0.59 16 24 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.05 0.88 6.84 -51.93 -0.36 0.52 16 26 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.84 7.47 -51.93 -0.39 0.45 16 29 H 0.06 0.82 6.98 -51.93 -0.36 0.46 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.90 6.63 -51.93 -0.34 0.56 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.35 5.92 9.04 45.56 0.41 6.33 16 LS Contribution 264.16 15.07 3.98 3.98 Total: -1.00 -32.11 264.16 -6.81 -38.93 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.90 Total: 0.38 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.70 Total: -6.87 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.23 Total: -42.38 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.39 Total: -11.84 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.11 -6.81 -38.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250386717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.001 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds