Wall clock time and date at job start Mon Mar 30 2020 20:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 119.99916 * 2 1 4 4 H 1.08008 * 120.00066 * 203.15134 * 3 2 1 5 5 C 1.38808 * 120.00164 * 23.15739 * 3 2 1 6 6 N 1.31623 * 120.00217 * 14.00243 * 5 3 2 7 7 Si 1.86800 * 120.00106 * 194.00773 * 5 3 2 8 8 H 1.48493 * 109.47126 * 59.99715 * 7 5 3 9 9 H 1.48497 * 109.47309 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47243 * 299.99739 * 7 5 3 11 11 C 1.46503 * 119.99667 * 180.02562 * 2 1 3 12 12 H 1.09006 * 109.62073 * 180.38496 * 11 2 1 13 13 C 1.54240 * 109.62675 * 60.00454 * 11 2 1 14 14 C 1.45544 * 112.40482 * 160.29899 * 13 11 2 15 15 C 1.54245 * 112.40516 * 61.93299 * 14 13 11 16 16 C 1.50472 * 108.52331 * 280.01240 * 15 14 13 17 17 C 1.54064 * 112.49434 * 94.15082 * 16 15 14 18 18 C 1.50468 * 109.62946 * 300.97362 * 11 2 1 19 19 H 1.09001 * 108.87623 * 93.08587 * 18 11 2 20 20 O 1.42895 * 108.87571 * 334.63874 * 18 11 2 21 21 H 1.08993 * 109.47167 * 275.16979 * 1 2 3 22 22 H 1.09006 * 109.46963 * 35.16792 * 1 2 3 23 23 H 1.09004 * 109.47048 * 155.16612 * 1 2 3 24 24 H 0.97000 * 120.00147 * 179.97438 * 6 5 3 25 25 H 1.08995 * 108.89431 * 281.04968 * 13 11 2 26 26 H 1.08994 * 108.89991 * 39.54754 * 13 11 2 27 27 H 1.09000 * 108.89637 * 182.68863 * 14 13 11 28 28 H 1.09007 * 108.89670 * 301.27571 * 14 13 11 29 29 H 1.08999 * 109.62837 * 39.72682 * 15 14 13 30 30 H 1.09002 * 109.62578 * 160.11004 * 15 14 13 31 31 H 1.08997 * 108.87922 * 214.92504 * 16 15 14 32 32 H 1.08999 * 108.87752 * 333.47566 * 16 15 14 33 33 H 1.09007 * 108.81572 * 79.14594 * 17 16 15 34 34 H 1.08997 * 108.81486 * 197.52975 * 17 16 15 35 35 H 0.96709 * 113.99475 * 180.02562 * 20 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1645 1.2236 -0.3678 5 6 1.5395 2.3396 0.4727 6 7 0.4249 2.2571 1.1679 7 14 2.3002 4.0093 0.1222 8 1 2.3771 4.2198 -1.3458 9 1 1.4617 5.0729 0.7310 10 1 3.6663 4.0626 0.7021 11 6 2.1975 -1.2688 -0.0006 12 1 3.2697 -1.0725 0.0064 13 6 1.8275 -2.0800 -1.2591 14 6 2.8154 -3.1025 -1.5704 15 6 2.9492 -4.1518 -0.4478 16 6 3.8155 -3.5791 0.6411 17 6 2.9926 -2.9084 1.7576 18 6 1.8185 -2.0718 1.2142 19 1 0.9994 -2.7417 0.9527 20 8 1.3739 -1.1794 2.2379 21 1 -0.3633 0.0926 1.0234 22 1 -0.3633 0.8401 -0.5919 23 1 -0.3633 -0.9327 -0.4316 24 1 -0.0012 3.0633 1.4986 25 1 0.8619 -2.5595 -1.0988 26 1 1.7452 -1.3993 -2.1064 27 1 2.5236 -3.6065 -2.4917 28 1 3.7831 -2.6240 -1.7216 29 1 1.9634 -4.3861 -0.0462 30 1 3.4072 -5.0573 -0.8458 31 1 4.4119 -4.3812 1.0759 32 1 4.4858 -2.8382 0.2055 33 1 2.5978 -3.6820 2.4164 34 1 3.6487 -2.2571 2.3350 35 1 1.1107 -1.6208 3.0572 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250386717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:21 Heat of formation + Delta-G solvation = -53.745633 kcal Electronic energy + Delta-G solvation = -15576.342646 eV Core-core repulsion = 13187.980473 eV Total energy + Delta-G solvation = -2388.362173 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.39325 -36.75609 -36.59673 -33.53775 -32.32931 -30.40959 -27.88991 -26.02982 -24.89997 -23.40572 -21.18450 -20.02991 -18.74644 -17.87036 -16.99978 -16.17070 -15.96498 -15.30750 -15.14623 -14.67904 -14.50186 -14.02619 -13.81581 -13.48546 -12.99182 -12.80911 -12.63461 -12.34579 -12.26727 -12.14943 -11.97526 -11.83045 -11.51152 -11.35250 -11.19776 -10.97518 -10.53690 -10.39401 -8.59292 -7.69378 -5.15829 1.45376 1.48310 1.54576 2.55859 3.39459 3.52434 3.67192 3.80816 4.14993 4.23828 4.27487 4.37858 4.39892 4.50521 4.65591 4.77157 4.89251 5.03206 5.05056 5.14326 5.21806 5.31164 5.34019 5.40658 5.45149 5.49524 5.58771 5.61494 5.69562 5.89999 6.43225 7.19434 7.28277 8.02956 8.46794 9.32137 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040631 B = 0.009868 C = 0.009432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.970869 B = 2836.889992 C = 2967.846977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.592 5.592 3 C -0.257 4.257 4 H 0.061 0.939 5 C -0.055 4.055 6 N -0.929 5.929 7 Si 0.962 3.038 8 H -0.280 1.280 9 H -0.295 1.295 10 H -0.279 1.279 11 C 0.177 3.823 12 H 0.050 0.950 13 C -0.121 4.121 14 C -0.111 4.111 15 C -0.113 4.113 16 C -0.113 4.113 17 C -0.140 4.140 18 C 0.093 3.907 19 H 0.040 0.960 20 O -0.559 6.559 21 H 0.010 0.990 22 H 0.002 0.998 23 H 0.018 0.982 24 H 0.242 0.758 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.500 -13.937 -1.944 14.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.313 5.313 3 C -0.388 4.388 4 H 0.079 0.921 5 C -0.250 4.250 6 N -0.576 5.576 7 Si 0.791 3.209 8 H -0.206 1.206 9 H -0.221 1.221 10 H -0.205 1.205 11 C 0.070 3.930 12 H 0.069 0.931 13 C -0.160 4.160 14 C -0.149 4.149 15 C -0.150 4.150 16 C -0.150 4.150 17 C -0.178 4.178 18 C 0.033 3.967 19 H 0.058 0.942 20 O -0.362 6.362 21 H 0.028 0.972 22 H 0.020 0.980 23 H 0.037 0.963 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 4.533 -13.351 -2.349 14.294 hybrid contribution -0.067 0.947 0.580 1.113 sum 4.466 -12.404 -1.770 13.302 Atomic orbital electron populations 1.20330 0.83254 0.94338 0.97478 1.43812 1.01585 1.00723 1.85228 1.19417 0.98376 0.87027 1.33962 0.92110 1.25732 0.99066 1.01474 0.98690 1.70286 1.21467 1.26820 1.39020 0.85419 0.77588 0.80170 0.77708 1.20584 1.22101 1.20473 1.20364 0.95014 0.85545 0.92069 0.93139 1.20856 0.99720 0.97655 0.97808 1.20454 0.98950 0.96166 0.99338 1.21355 1.00433 0.98063 0.95192 1.21272 0.98044 0.99835 0.95862 1.22582 0.97420 0.98826 0.99002 1.22292 0.94946 0.90056 0.89437 0.94174 1.87092 1.87012 1.36371 1.25758 0.97176 0.97965 0.96314 0.94878 0.92849 0.93592 0.90817 0.92557 0.91892 0.89605 0.90189 0.93023 0.90650 0.93171 0.78979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.21 7.84 127.77 1.00 11.21 16 2 N -0.59 -31.52 2.12 -705.00 -1.49 -33.01 16 3 C -0.26 -15.13 9.58 84.03 0.80 -14.33 16 4 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 5 C -0.05 -3.25 5.08 84.86 0.43 -2.82 16 6 N -0.93 -58.39 10.78 21.65 0.23 -58.16 16 7 Si 0.96 47.71 29.58 68.60 2.03 49.74 16 8 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 9 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 10 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 11 C 0.18 7.49 2.18 44.59 0.10 7.58 16 12 H 0.05 2.24 6.73 -2.38 -0.02 2.22 16 13 C -0.12 -4.15 4.16 28.74 0.12 -4.03 16 14 C -0.11 -2.86 5.27 28.74 0.15 -2.71 16 15 C -0.11 -2.44 5.61 30.20 0.17 -2.27 16 16 C -0.11 -2.65 5.32 30.14 0.16 -2.49 16 17 C -0.14 -3.97 5.43 31.32 0.17 -3.80 16 18 C 0.09 3.43 2.47 30.14 0.07 3.51 16 19 H 0.04 1.40 6.63 -2.39 -0.02 1.38 16 20 O -0.56 -24.74 11.19 -148.98 -1.67 -26.40 16 21 H 0.01 0.59 6.69 -2.39 -0.02 0.57 16 22 H 0.00 0.09 7.38 -2.38 -0.02 0.07 16 23 H 0.02 0.86 6.89 -2.38 -0.02 0.84 16 24 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16 25 H 0.05 1.77 6.84 -2.39 -0.02 1.76 16 26 H 0.05 1.74 8.12 -2.39 -0.02 1.72 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.49 7.47 -2.38 -0.02 1.47 16 29 H 0.06 1.39 6.98 -2.39 -0.02 1.37 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.35 6.63 -2.39 -0.02 1.33 16 33 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.37 12.41 9.04 -74.05 -0.67 11.74 16 Total: -1.00 -70.14 264.16 2.67 -67.47 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.39 Total: 10.50 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 3.18 Total: -10.14 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -1.26 Total: -91.17 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -1.67 Total: -26.40 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -70.14 2.67 -67.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250386717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.724 kcal (2) G-P(sol) polarization free energy of solvation -70.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds