Wall clock time and date at job start Mon Mar 30 2020 20:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47428 * 2 1 4 4 C 1.50702 * 109.46976 * 239.99617 * 2 1 3 5 5 H 1.07998 * 120.00232 * 240.00063 * 4 2 1 6 6 C 1.37873 * 119.99677 * 60.00563 * 4 2 1 7 7 N 1.31519 * 120.00287 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99972 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47201 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47161 * 119.99752 * 8 6 4 11 11 H 1.48494 * 109.47389 * 240.00008 * 8 6 4 12 12 N 1.46900 * 109.46775 * 120.00057 * 2 1 3 13 13 C 1.46902 * 111.00181 * 274.99795 * 12 2 1 14 14 C 1.52998 * 109.47297 * 180.02562 * 13 12 2 15 15 H 1.09001 * 110.43667 * 52.45822 * 14 13 12 16 16 C 1.54895 * 110.59884 * 289.84201 * 14 13 12 17 17 C 1.54961 * 102.77671 * 203.35053 * 16 14 13 18 18 C 1.54270 * 104.16191 * 37.88526 * 17 16 14 19 19 C 1.53869 * 106.63967 * 336.44607 * 18 17 16 20 20 H 1.08999 * 110.03405 * 119.26051 * 19 18 17 21 21 O 1.42903 * 110.03424 * 240.64398 * 19 18 17 22 22 H 1.08998 * 109.47428 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47079 * 300.00157 * 1 2 3 24 24 H 1.08997 * 109.46800 * 59.99598 * 1 2 3 25 25 H 0.97000 * 120.00279 * 180.02562 * 7 6 4 26 26 H 1.00896 * 111.00513 * 38.95467 * 12 2 1 27 27 H 1.09002 * 109.47120 * 59.99882 * 13 12 2 28 28 H 1.09000 * 109.47016 * 299.99955 * 13 12 2 29 29 H 1.09001 * 110.75082 * 321.63589 * 16 14 13 30 30 H 1.08991 * 110.75596 * 84.82279 * 16 14 13 31 31 H 1.08997 * 110.47708 * 279.23123 * 17 16 14 32 32 H 1.09002 * 110.53308 * 156.56515 * 17 16 14 33 33 H 1.09002 * 110.03399 * 217.13605 * 18 17 16 34 34 H 1.08995 * 110.02943 * 95.75505 * 18 17 16 35 35 H 0.96701 * 113.99803 * 298.54665 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1473 -2.2865 -3.6037 10 1 1.1677 -1.5867 -4.8164 11 1 3.1472 -0.1860 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2225 2.3469 14 6 2.5961 -0.5329 3.5742 15 1 3.5301 -1.0449 3.3426 16 6 1.5344 -1.5429 4.0763 17 6 1.9223 -1.7367 5.5640 18 6 2.3622 -0.3319 6.0255 19 6 2.7901 0.4334 4.7610 20 1 2.1648 1.3164 4.6295 21 8 4.1630 0.8168 4.8619 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 0.7082 1.1609 -3.4844 26 1 1.4496 -1.4979 1.4101 27 1 1.0870 0.6163 2.5526 28 1 2.7589 1.0461 2.1183 29 1 0.5318 -1.1238 3.9906 30 1 1.6066 -2.4829 3.5295 31 1 2.7472 -2.4435 5.6540 32 1 1.0629 -2.0765 6.1420 33 1 3.2020 -0.4116 6.7158 34 1 1.5298 0.1801 6.5081 35 1 4.3527 1.4085 5.6029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251603372.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:34 Heat of formation + Delta-G solvation = -71.202589 kcal Electronic energy + Delta-G solvation = -14562.775643 eV Core-core repulsion = 12173.656479 eV Total energy + Delta-G solvation = -2389.119164 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.94383 -35.98018 -34.76539 -32.52146 -30.08785 -27.57231 -27.11641 -25.09307 -23.01168 -20.83322 -19.98295 -19.64509 -17.05546 -16.30603 -15.47137 -15.15099 -14.59751 -14.40644 -13.38946 -13.18470 -12.91270 -12.71054 -12.36077 -11.91962 -11.61145 -11.31248 -11.10187 -10.93330 -10.75347 -10.65637 -10.47000 -10.25946 -10.16330 -10.07385 -9.86842 -9.68756 -8.92575 -8.31746 -7.14546 -5.93625 -3.96491 3.35165 3.42565 3.48566 4.27893 4.48379 4.63003 4.66189 4.96951 5.34566 5.38026 5.41393 5.52532 5.57714 5.71942 5.75954 5.84740 5.96637 6.06551 6.19759 6.26260 6.30248 6.55317 6.69878 6.74227 6.88512 7.15294 7.44373 7.74932 7.78644 7.94869 8.33935 8.62455 8.69445 9.11447 9.68821 11.13598 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052113 B = 0.006142 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.166561 B = 4557.823128 C = 4618.396453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.209 3.791 3 H 0.033 0.967 4 C -0.492 4.492 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.683 5.683 13 C 0.070 3.930 14 C -0.081 4.081 15 H 0.092 0.908 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.157 4.157 19 C 0.102 3.898 20 H 0.057 0.943 21 O -0.562 6.562 22 H 0.027 0.973 23 H 0.004 0.996 24 H 0.088 0.912 25 H 0.258 0.742 26 H 0.324 0.676 27 H 0.016 0.984 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.543 -1.493 15.487 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.212 1.212 12 N -0.312 5.312 13 C -0.060 4.060 14 C -0.100 4.100 15 H 0.110 0.890 16 C -0.158 4.158 17 C -0.158 4.158 18 C -0.195 4.195 19 C 0.042 3.958 20 H 0.074 0.926 21 O -0.367 6.367 22 H 0.046 0.954 23 H 0.023 0.977 24 H 0.107 0.893 25 H 0.068 0.932 26 H 0.140 0.860 27 H 0.034 0.966 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.187 -1.674 14.637 14.780 hybrid contribution -0.851 0.153 -0.120 0.873 sum 0.337 -1.520 14.517 14.600 Atomic orbital electron populations 1.22424 1.00801 0.99115 1.00402 1.19184 0.89528 0.94462 0.86665 0.94951 1.21225 1.29906 1.12334 0.89636 0.91889 1.24963 0.95410 0.95243 0.99063 1.69900 1.37549 1.23338 1.23147 0.86451 0.78476 0.79668 0.82861 1.19733 1.21253 1.21161 1.60785 1.57966 1.09064 1.03413 1.21904 0.97879 0.95822 0.90431 1.22008 0.99825 0.95203 0.92948 0.88983 1.22566 0.98543 0.99716 0.95024 1.22290 1.00662 0.96348 0.96513 1.22900 1.01212 0.97229 0.98115 1.22567 0.82214 0.96455 0.94524 0.92552 1.86616 1.26545 1.69534 1.54015 0.95389 0.97712 0.89307 0.93195 0.85999 0.96572 0.91677 0.91579 0.90702 0.91535 0.91916 0.91245 0.91720 0.78348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 8.94 37.16 0.33 -3.81 16 2 C 0.21 5.44 2.57 -68.86 -0.18 5.27 16 3 H 0.03 0.93 7.80 -51.93 -0.40 0.52 16 4 C -0.49 -14.03 8.84 -34.44 -0.30 -14.33 16 5 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.29 11.32 55.43 0.63 -25.66 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 N -0.68 -15.05 6.23 -107.95 -0.67 -15.73 16 13 C 0.07 1.31 4.83 -3.82 -0.02 1.29 16 14 C -0.08 -1.26 2.82 -88.96 -0.25 -1.51 16 15 H 0.09 1.61 8.08 -51.93 -0.42 1.19 16 16 C -0.12 -1.59 5.70 -24.70 -0.14 -1.74 16 17 C -0.12 -1.32 6.84 -25.03 -0.17 -1.49 16 18 C -0.16 -1.65 6.60 -25.61 -0.17 -1.82 16 19 C 0.10 1.33 3.83 -25.62 -0.10 1.23 16 20 H 0.06 0.72 7.84 -51.93 -0.41 0.32 16 21 O -0.56 -7.54 13.22 -35.23 -0.47 -8.01 16 22 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 23 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 24 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.32 6.69 7.76 -39.29 -0.31 6.39 16 27 H 0.02 0.30 7.32 -51.93 -0.38 -0.08 16 28 H 0.06 1.32 8.06 -51.93 -0.42 0.91 16 29 H 0.07 0.87 7.98 -51.93 -0.41 0.46 16 30 H 0.07 0.99 8.04 -51.93 -0.42 0.58 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.67 7.95 -51.93 -0.41 0.26 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.37 3.13 9.10 45.56 0.41 3.54 16 LS Contribution 280.03 15.07 4.22 4.22 Total: -1.00 -30.49 280.03 -7.51 -38.00 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.10 Total: 5.75 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -1.09 Total: -15.49 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -0.05 Total: -41.39 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.47 Total: -8.01 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.49 -7.51 -38.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251603372.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.203 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds