Wall clock time and date at job start Mon Mar 30 2020 20:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99698 * 2 1 4 4 H 1.08995 * 110.82189 * 26.66188 * 3 2 1 5 5 C 1.54897 * 110.75375 * 263.33019 * 3 2 1 6 6 C 1.54272 * 104.19319 * 203.74491 * 5 3 2 7 7 C 1.53876 * 106.59819 * 23.60958 * 6 5 3 8 8 C 1.54262 * 106.59892 * 359.97438 * 7 6 5 9 9 H 1.08997 * 110.48593 * 95.20377 * 8 7 6 10 10 N 1.46900 * 110.48510 * 217.70995 * 8 7 6 11 11 C 1.46903 * 111.00314 * 273.54780 * 10 8 7 12 12 H 1.09001 * 109.46349 * 35.00245 * 11 10 8 13 13 C 1.52994 * 109.47033 * 275.00288 * 11 10 8 14 14 C 1.50699 * 109.46994 * 154.99989 * 11 10 8 15 15 H 1.08002 * 120.00516 * 359.97438 * 14 11 10 16 16 C 1.37884 * 119.99783 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99707 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 119.99956 * 180.27458 * 16 14 11 19 19 H 1.48497 * 109.47172 * 179.72730 * 18 16 14 20 20 H 1.48506 * 109.47132 * 299.72429 * 18 16 14 21 21 H 1.48501 * 109.47173 * 59.72550 * 18 16 14 22 22 H 1.08992 * 109.47491 * 60.00060 * 1 2 3 23 23 H 1.09004 * 109.46880 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46906 * 299.99935 * 1 2 3 25 25 H 1.08992 * 110.48740 * 85.06395 * 5 3 2 26 26 H 1.08994 * 110.59765 * 322.47370 * 5 3 2 27 27 H 1.08998 * 110.03080 * 264.32528 * 6 5 3 28 28 H 1.09001 * 110.06845 * 142.91620 * 6 5 3 29 29 H 1.09004 * 110.03117 * 240.71458 * 7 6 5 30 30 H 1.08995 * 110.07392 * 119.30995 * 7 6 5 31 31 H 1.00907 * 111.00419 * 149.59142 * 10 8 7 32 32 H 1.08998 * 109.47717 * 59.99706 * 13 11 10 33 33 H 1.09001 * 109.47144 * 180.02562 * 13 11 10 34 34 H 1.09007 * 109.47093 * 299.99300 * 13 11 10 35 35 H 0.97005 * 119.99656 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3360 2.0297 0.4571 5 6 2.3871 1.7385 -1.4387 6 6 3.4948 2.7934 -1.2382 7 6 4.1256 2.5125 0.1369 8 6 3.3789 1.2972 0.7243 9 1 3.9205 0.3762 0.5090 10 7 3.1956 1.4576 2.1730 11 6 4.3658 0.9618 2.9099 12 1 5.2698 1.1673 2.3366 13 6 4.2307 -0.5468 3.1260 14 6 4.4492 1.6552 4.2453 15 1 3.7074 2.3909 4.5191 16 6 5.4732 1.3511 5.1172 17 7 6.3772 0.4563 4.7831 18 14 5.5723 2.2050 6.7756 19 1 6.7524 1.7005 7.5224 20 1 5.7052 3.6699 6.5710 21 1 4.3379 1.9236 7.5518 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.5269 2.1795 -1.9420 26 1 2.7670 0.8899 -2.0074 27 1 3.0641 3.7946 -1.2540 28 1 4.2476 2.6987 -2.0208 29 1 4.0011 3.3775 0.7885 30 1 5.1846 2.2811 0.0224 31 1 2.3519 0.9994 2.4837 32 1 4.1704 -1.0483 2.1602 33 1 5.0988 -0.9145 3.6732 34 1 3.3266 -0.7522 3.6993 35 1 7.0978 0.2427 5.3964 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251717076.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:43 Heat of formation + Delta-G solvation = -58.540381 kcal Electronic energy + Delta-G solvation = -14881.896031 eV Core-core repulsion = 12493.325942 eV Total energy + Delta-G solvation = -2388.570089 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.88756 -36.19167 -34.66065 -32.04716 -28.72911 -28.00665 -26.27639 -25.16282 -24.79716 -20.73449 -20.27709 -19.08468 -16.75562 -16.39339 -15.37530 -14.82317 -14.74275 -14.49950 -13.50381 -13.30375 -13.14559 -12.48775 -12.21147 -12.03177 -11.40848 -11.19941 -11.06189 -10.88781 -10.85884 -10.69402 -10.52112 -10.28369 -10.12558 -9.94485 -9.84469 -9.19430 -8.89749 -8.29945 -7.18034 -5.92503 -3.95577 3.37549 3.41278 3.44585 3.96584 4.48216 4.85541 4.92519 5.18962 5.34642 5.38736 5.44909 5.51705 5.57229 5.70995 5.80394 5.86211 5.95984 6.07347 6.28807 6.33088 6.38841 6.64131 6.77528 6.83187 6.96045 7.21423 7.41040 7.52943 7.82424 7.95745 8.35946 8.61730 8.70236 9.11266 9.69255 11.14553 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040044 B = 0.007706 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.071238 B = 3632.598031 C = 3912.156393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.078 3.922 4 H 0.075 0.925 5 C -0.141 4.141 6 C -0.119 4.119 7 C -0.112 4.112 8 C 0.089 3.911 9 H 0.049 0.951 10 N -0.677 5.677 11 C 0.212 3.788 12 H 0.034 0.966 13 C -0.167 4.167 14 C -0.494 4.494 15 H 0.061 0.939 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.897 3.103 19 H -0.289 1.289 20 H -0.278 1.278 21 H -0.279 1.279 22 H 0.036 0.964 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.326 0.674 32 H 0.007 0.993 33 H 0.087 0.913 34 H 0.026 0.974 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.339 1.492 -10.340 13.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C 0.020 3.980 4 H 0.093 0.907 5 C -0.180 4.180 6 C -0.158 4.158 7 C -0.151 4.151 8 C -0.022 4.022 9 H 0.067 0.933 10 N -0.307 5.307 11 C 0.104 3.896 12 H 0.051 0.949 13 C -0.227 4.227 14 C -0.533 4.533 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.725 3.275 19 H -0.215 1.215 20 H -0.204 1.204 21 H -0.204 1.204 22 H 0.054 0.946 23 H 0.099 0.901 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.026 0.974 33 H 0.105 0.895 34 H 0.045 0.955 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.833 1.899 -10.247 13.037 hybrid contribution -0.192 -0.418 0.803 0.925 sum -8.025 1.481 -9.444 12.481 Atomic orbital electron populations 1.22738 0.81781 1.02253 0.99676 1.87931 1.19094 1.28134 1.94852 1.23424 0.95499 0.84046 0.95029 0.90700 1.22724 0.98649 0.99301 0.97300 1.22029 0.97458 0.98300 0.97971 1.22095 0.98958 0.99144 0.94878 1.22299 0.92799 0.96904 0.90241 0.93282 1.60972 1.06816 1.62275 1.00606 1.19175 0.87603 0.89703 0.93070 0.94859 1.22405 1.02218 1.00316 0.97724 1.21131 1.10386 1.21739 1.00041 0.92098 1.24953 0.95778 0.95413 0.98427 1.69886 1.14460 1.32861 1.36560 0.86583 0.77214 0.79823 0.83855 1.21494 1.20352 1.20435 0.94580 0.90103 0.93964 0.92160 0.91002 0.91999 0.92052 0.90211 0.92007 0.85724 0.97445 0.89457 0.95492 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.85 101.05 1.10 1.49 16 2 O -0.38 -6.18 10.49 -35.23 -0.37 -6.55 16 3 C 0.08 1.23 2.79 -24.75 -0.07 1.16 16 4 H 0.08 1.15 7.83 -51.93 -0.41 0.74 16 5 C -0.14 -1.89 6.55 -25.06 -0.16 -2.05 16 6 C -0.12 -1.60 6.80 -25.61 -0.17 -1.78 16 7 C -0.11 -1.92 6.35 -25.61 -0.16 -2.08 16 8 C 0.09 1.67 2.68 -66.07 -0.18 1.50 16 9 H 0.05 1.03 7.20 -51.93 -0.37 0.65 16 10 N -0.68 -14.85 6.02 -99.24 -0.60 -15.45 16 11 C 0.21 5.49 2.43 -68.87 -0.17 5.32 16 12 H 0.03 0.94 7.74 -51.93 -0.40 0.54 16 13 C -0.17 -4.23 8.92 37.15 0.33 -3.90 16 14 C -0.49 -13.94 8.84 -34.44 -0.30 -14.24 16 15 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 16 C 0.05 1.54 5.30 -17.82 -0.09 1.45 16 17 N -0.90 -26.20 11.32 55.43 0.63 -25.57 16 18 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.33 7.00 8.21 -39.29 -0.32 6.68 16 32 H 0.01 0.16 7.45 -51.93 -0.39 -0.23 16 33 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 34 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 282.13 15.07 4.25 4.25 Total: -1.00 -29.33 282.13 -6.97 -36.30 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.97 Total: 3.35 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 0.11 Total: -13.14 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.03 Total: -41.02 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.37 Total: -6.55 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.33 -6.97 -36.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251717076.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.245 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds