Wall clock time and date at job start Mon Mar 30 2020 20:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99698 * 2 1 4 4 H 1.08995 * 110.82189 * 26.66188 * 3 2 1 5 5 C 1.54897 * 110.75375 * 263.33019 * 3 2 1 6 6 C 1.54272 * 104.19319 * 203.74491 * 5 3 2 7 7 C 1.53876 * 106.59819 * 23.60958 * 6 5 3 8 8 C 1.54262 * 106.59892 * 359.97438 * 7 6 5 9 9 H 1.08997 * 110.48593 * 95.20377 * 8 7 6 10 10 N 1.46900 * 110.48510 * 217.70995 * 8 7 6 11 11 C 1.46903 * 111.00314 * 273.54780 * 10 8 7 12 12 H 1.09001 * 109.46349 * 35.00245 * 11 10 8 13 13 C 1.52994 * 109.47033 * 275.00288 * 11 10 8 14 14 C 1.50699 * 109.46994 * 154.99989 * 11 10 8 15 15 H 1.08002 * 120.00516 * 359.97438 * 14 11 10 16 16 C 1.37884 * 119.99783 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99707 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 119.99956 * 180.27458 * 16 14 11 19 19 H 1.48497 * 109.47172 * 179.72730 * 18 16 14 20 20 H 1.48506 * 109.47132 * 299.72429 * 18 16 14 21 21 H 1.48501 * 109.47173 * 59.72550 * 18 16 14 22 22 H 1.08992 * 109.47491 * 60.00060 * 1 2 3 23 23 H 1.09004 * 109.46880 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46906 * 299.99935 * 1 2 3 25 25 H 1.08992 * 110.48740 * 85.06395 * 5 3 2 26 26 H 1.08994 * 110.59765 * 322.47370 * 5 3 2 27 27 H 1.08998 * 110.03080 * 264.32528 * 6 5 3 28 28 H 1.09001 * 110.06845 * 142.91620 * 6 5 3 29 29 H 1.09004 * 110.03117 * 240.71458 * 7 6 5 30 30 H 1.08995 * 110.07392 * 119.30995 * 7 6 5 31 31 H 1.00907 * 111.00419 * 149.59142 * 10 8 7 32 32 H 1.08998 * 109.47717 * 59.99706 * 13 11 10 33 33 H 1.09001 * 109.47144 * 180.02562 * 13 11 10 34 34 H 1.09007 * 109.47093 * 299.99300 * 13 11 10 35 35 H 0.97005 * 119.99656 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3360 2.0297 0.4571 5 6 2.3871 1.7385 -1.4387 6 6 3.4948 2.7934 -1.2382 7 6 4.1256 2.5125 0.1369 8 6 3.3789 1.2972 0.7243 9 1 3.9205 0.3762 0.5090 10 7 3.1956 1.4576 2.1730 11 6 4.3658 0.9618 2.9099 12 1 5.2698 1.1673 2.3366 13 6 4.2307 -0.5468 3.1260 14 6 4.4492 1.6552 4.2453 15 1 3.7074 2.3909 4.5191 16 6 5.4732 1.3511 5.1172 17 7 6.3772 0.4563 4.7831 18 14 5.5723 2.2050 6.7756 19 1 6.7524 1.7005 7.5224 20 1 5.7052 3.6699 6.5710 21 1 4.3379 1.9236 7.5518 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.5269 2.1795 -1.9420 26 1 2.7670 0.8899 -2.0074 27 1 3.0641 3.7946 -1.2540 28 1 4.2476 2.6987 -2.0208 29 1 4.0011 3.3775 0.7885 30 1 5.1846 2.2811 0.0224 31 1 2.3519 0.9994 2.4837 32 1 4.1704 -1.0483 2.1602 33 1 5.0988 -0.9145 3.6732 34 1 3.3266 -0.7522 3.6993 35 1 7.0978 0.2427 5.3964 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251717076.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:43 Heat of formation + Delta-G solvation = -78.306824 kcal Electronic energy + Delta-G solvation = -14882.753168 eV Core-core repulsion = 12493.325942 eV Total energy + Delta-G solvation = -2389.427226 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.19268 -37.65665 -36.30582 -34.03114 -30.50972 -29.18078 -27.54642 -27.22711 -26.26658 -22.48564 -21.65721 -20.58608 -18.44869 -17.92754 -16.91519 -16.71332 -15.93625 -15.80296 -15.07719 -14.77263 -14.66044 -14.15576 -13.79388 -13.45688 -13.19609 -12.88747 -12.80335 -12.39331 -12.23681 -12.21654 -12.17401 -12.03603 -11.87662 -11.45832 -11.29694 -11.00728 -10.48103 -10.39532 -9.00626 -8.08998 -6.20650 1.43160 1.45384 1.53146 2.44258 2.84445 3.19020 3.55498 3.64269 3.89886 4.13354 4.32387 4.47805 4.52263 4.58009 4.61820 4.71875 4.74295 4.82477 4.86654 4.90529 5.05354 5.06624 5.15819 5.18983 5.29720 5.39036 5.51263 5.67821 5.82487 6.26329 6.34910 6.64404 6.82144 6.93864 7.49110 8.96838 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040044 B = 0.007706 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.071238 B = 3632.598031 C = 3912.156393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.085 3.915 4 H 0.081 0.919 5 C -0.133 4.133 6 C -0.110 4.110 7 C -0.113 4.113 8 C 0.080 3.920 9 H 0.023 0.977 10 N -0.675 5.675 11 C 0.219 3.781 12 H 0.001 0.999 13 C -0.153 4.153 14 C -0.515 4.515 15 H 0.056 0.944 16 C 0.007 3.993 17 N -0.924 5.924 18 Si 0.963 3.037 19 H -0.284 1.284 20 H -0.272 1.272 21 H -0.271 1.271 22 H 0.057 0.943 23 H 0.094 0.906 24 H 0.044 0.956 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.328 0.672 32 H 0.017 0.983 33 H 0.062 0.938 34 H 0.029 0.971 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.728 2.348 -11.002 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C 0.027 3.973 4 H 0.099 0.901 5 C -0.171 4.171 6 C -0.148 4.148 7 C -0.151 4.151 8 C -0.031 4.031 9 H 0.041 0.959 10 N -0.304 5.304 11 C 0.110 3.890 12 H 0.019 0.981 13 C -0.212 4.212 14 C -0.554 4.554 15 H 0.074 0.926 16 C -0.191 4.191 17 N -0.565 5.565 18 Si 0.789 3.211 19 H -0.210 1.210 20 H -0.198 1.198 21 H -0.196 1.196 22 H 0.076 0.924 23 H 0.112 0.888 24 H 0.063 0.937 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.145 0.855 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.241 2.758 -10.926 14.574 hybrid contribution 0.226 -0.723 0.984 1.242 sum -9.015 2.035 -9.942 13.574 Atomic orbital electron populations 1.22962 0.79592 1.03619 1.00849 1.87890 1.21524 1.28304 1.95078 1.23318 0.93530 0.84312 0.96141 0.90074 1.22692 0.99563 0.99219 0.95618 1.21998 0.97785 0.99419 0.95586 1.22060 0.98382 0.97583 0.97088 1.22434 0.95447 0.96532 0.88674 0.95932 1.60882 1.05406 1.61790 1.02338 1.18912 0.87855 0.89853 0.92365 0.98149 1.22215 1.01076 1.00102 0.97835 1.21422 1.10629 1.22086 1.01242 0.92571 1.25767 0.95305 0.95995 1.02056 1.70021 1.14844 1.33838 1.37766 0.85537 0.77462 0.78802 0.79342 1.20973 1.19751 1.19623 0.92411 0.88776 0.93722 0.89187 0.91176 0.90044 0.90457 0.91713 0.93460 0.85521 0.96441 0.91929 0.95147 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.85 113.37 1.23 1.79 16 2 O -0.41 -12.63 10.49 -148.98 -1.56 -14.19 16 3 C 0.08 2.54 2.79 31.88 0.09 2.63 16 4 H 0.08 2.32 7.83 -2.39 -0.02 2.30 16 5 C -0.13 -3.16 6.55 31.67 0.21 -2.95 16 6 C -0.11 -2.68 6.80 31.32 0.21 -2.47 16 7 C -0.11 -3.85 6.35 31.32 0.20 -3.65 16 8 C 0.08 3.04 2.68 45.98 0.12 3.16 16 9 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 10 N -0.67 -30.06 6.02 -467.88 -2.82 -32.88 16 11 C 0.22 11.65 2.43 44.17 0.11 11.75 16 12 H 0.00 0.03 7.74 -2.39 -0.02 0.01 16 13 C -0.15 -7.91 8.92 71.98 0.64 -7.27 16 14 C -0.52 -29.50 8.84 25.60 0.23 -29.27 16 15 H 0.06 3.20 7.81 -2.91 -0.02 3.17 16 16 C 0.01 0.38 5.30 84.66 0.45 0.83 16 17 N -0.92 -54.86 11.32 21.45 0.24 -54.61 16 18 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 25 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 2.38 8.04 -2.39 -0.02 2.36 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.33 14.15 8.21 -89.69 -0.74 13.42 16 32 H 0.02 0.82 7.45 -2.39 -0.02 0.80 16 33 H 0.06 3.55 6.07 -2.39 -0.01 3.54 16 34 H 0.03 1.49 8.13 -2.38 -0.02 1.47 16 35 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 Total: -1.00 -63.36 282.13 1.69 -61.68 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.31 Total: 18.62 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 3.49 Total: -25.44 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -2.57 Total: -87.49 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -1.56 Total: -14.19 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -63.36 1.69 -61.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251717076.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.629 kcal (2) G-P(sol) polarization free energy of solvation -63.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds