Wall clock time and date at job start Mon Mar 30 2020 20:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47587 * 2 1 4 4 C 1.46906 * 110.99845 * 67.68735 * 3 2 1 5 5 C 1.50695 * 109.47324 * 71.16754 * 4 3 2 6 6 H 1.08007 * 120.00167 * 355.39225 * 5 4 3 7 7 C 1.37878 * 119.99782 * 175.39648 * 5 4 3 8 8 N 1.31516 * 119.99573 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00255 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46821 * 90.00082 * 9 7 5 11 11 H 1.48495 * 109.47001 * 210.00447 * 9 7 5 12 12 H 1.48498 * 109.46660 * 330.00072 * 9 7 5 13 13 C 1.46898 * 111.00009 * 303.73179 * 3 2 1 14 14 H 1.08996 * 110.01366 * 50.42324 * 13 3 2 15 15 C 1.54265 * 110.03064 * 171.81466 * 13 3 2 16 16 C 1.54896 * 104.19271 * 142.94298 * 15 13 3 17 17 C 1.54884 * 102.75046 * 322.05865 * 16 15 13 18 18 C 1.53877 * 110.03210 * 289.03315 * 13 3 2 19 19 H 1.08996 * 110.03073 * 121.38274 * 18 13 3 20 20 O 1.42903 * 110.03340 * 359.95065 * 18 13 3 21 21 H 1.08995 * 109.47407 * 186.24296 * 1 2 3 22 22 H 1.09000 * 109.46845 * 306.24440 * 1 2 3 23 23 H 1.09002 * 109.46685 * 66.24237 * 1 2 3 24 24 H 1.09002 * 109.47435 * 239.99606 * 2 1 3 25 25 H 1.09000 * 109.46746 * 120.00164 * 2 1 3 26 26 H 1.08999 * 109.46777 * 191.17170 * 4 3 2 27 27 H 1.08998 * 109.46795 * 311.16336 * 4 3 2 28 28 H 0.97000 * 120.00019 * 179.97438 * 8 7 5 29 29 H 1.08994 * 110.48790 * 261.61959 * 15 13 3 30 30 H 1.08998 * 110.48641 * 24.13448 * 15 13 3 31 31 H 1.09005 * 110.75359 * 80.37173 * 16 15 13 32 32 H 1.09004 * 110.75264 * 203.55766 * 16 15 13 33 33 H 1.08994 * 110.48693 * 156.62313 * 17 16 15 34 34 H 1.09003 * 110.48549 * 279.13241 * 17 16 15 35 35 H 0.96697 * 114.00072 * 179.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.7044 2.0548 1.2688 5 6 2.5678 1.4863 2.3653 6 1 3.2260 0.6553 2.1583 7 6 2.5174 2.0269 3.6326 8 7 3.2706 1.5304 4.5897 9 14 1.3795 3.4644 3.9904 10 1 0.0558 2.9514 4.4259 11 1 1.9645 4.3025 5.0677 12 1 1.2138 4.2821 2.7620 13 6 1.4773 2.1352 -1.1405 14 1 0.3951 2.0135 -1.1863 15 6 1.8361 3.6297 -1.0086 16 6 2.1183 4.0823 -2.4629 17 6 2.8451 2.8555 -3.0677 18 6 2.1190 1.6417 -2.4492 19 1 1.3482 1.2807 -3.1300 20 8 3.0558 0.5988 -2.1722 21 1 -0.3634 -1.0215 0.1117 22 1 -0.3633 0.6076 0.8288 23 1 -0.3633 0.4140 -0.9406 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.8959 3.1236 1.1727 27 1 0.6543 1.8945 1.5131 28 1 3.2355 1.9109 5.4812 29 1 0.9981 4.1878 -0.5913 30 1 2.7237 3.7557 -0.3887 31 1 1.1869 4.2799 -2.9936 32 1 2.7625 4.9615 -2.4756 33 1 2.7434 2.8487 -4.1529 34 1 3.8976 2.8576 -2.7841 35 1 3.4943 0.2450 -2.9581 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252432345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:46 Heat of formation + Delta-G solvation = -41.321628 kcal Electronic energy + Delta-G solvation = -15347.048993 eV Core-core repulsion = 12959.225565 eV Total energy + Delta-G solvation = -2387.823428 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.12048 -35.87455 -34.44395 -32.38639 -29.71768 -28.14191 -27.29685 -25.48358 -22.70421 -20.83358 -20.31974 -18.42731 -17.10703 -16.67098 -15.44364 -14.87996 -14.49495 -14.17103 -13.69231 -13.52890 -12.98980 -12.44956 -12.29084 -11.92262 -11.64369 -11.41902 -11.14853 -10.96810 -10.80758 -10.67836 -10.47216 -10.36347 -10.07501 -9.70889 -9.58547 -9.40066 -9.10167 -8.47625 -7.04889 -5.95452 -3.90208 3.32575 3.40028 3.41618 4.49111 4.52165 4.80734 4.86786 5.01642 5.27986 5.37618 5.49239 5.70867 5.74877 5.79991 5.85442 5.98593 6.03600 6.04333 6.17956 6.21932 6.35291 6.42387 6.53252 6.64023 6.74669 6.98276 7.07897 7.21897 7.75730 7.98882 8.20444 8.32088 8.81871 9.16306 9.67319 11.18255 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032576 B = 0.010465 C = 0.009312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.328168 B = 2674.848652 C = 3006.123204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.059 3.941 3 N -0.496 5.496 4 C 0.148 3.852 5 C -0.497 4.497 6 H 0.080 0.920 7 C 0.065 3.935 8 N -0.904 5.904 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.079 3.921 14 H 0.042 0.958 15 C -0.122 4.122 16 C -0.121 4.121 17 C -0.153 4.153 18 C 0.110 3.890 19 H 0.044 0.956 20 O -0.529 6.529 21 H 0.049 0.951 22 H 0.057 0.943 23 H 0.041 0.959 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.033 0.967 27 H -0.016 1.016 28 H 0.261 0.739 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 2.186 -15.077 15.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.069 4.069 3 N -0.219 5.219 4 C 0.022 3.978 5 C -0.535 4.535 6 H 0.098 0.902 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.192 1.192 13 C -0.031 4.031 14 H 0.060 0.940 15 C -0.159 4.159 16 C -0.159 4.159 17 C -0.191 4.191 18 C 0.051 3.949 19 H 0.062 0.938 20 O -0.331 6.331 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.051 0.949 27 H 0.001 0.999 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.982 2.317 -14.298 15.022 hybrid contribution -1.430 0.761 -0.136 1.626 sum -5.412 3.078 -14.434 15.720 Atomic orbital electron populations 1.22459 1.00521 1.01211 1.00751 1.22109 0.90658 0.91294 1.02844 1.62166 1.57146 1.01147 1.01465 1.20389 0.94477 0.95279 0.87639 1.21071 1.23031 1.17534 0.91910 0.90224 1.24899 0.95595 0.96799 0.96241 1.69902 1.40158 1.42151 1.02196 0.86909 0.81348 0.83563 0.78205 1.20522 1.21290 1.19184 1.22327 0.95680 0.93476 0.91622 0.93993 1.22554 1.02571 0.94498 0.96294 1.22374 0.99747 0.97378 0.96447 1.23089 1.01138 0.95917 0.98950 1.22458 0.90142 0.86901 0.95444 0.93802 1.86922 1.58465 1.53166 1.34583 0.93201 0.92387 0.93958 0.90576 0.90301 0.94936 0.99879 0.92869 0.92159 0.89430 0.92022 0.91565 0.92309 0.90316 0.79867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.41 9.16 37.16 0.34 -3.07 16 2 C 0.06 1.20 5.52 -3.82 -0.02 1.18 16 3 N -0.50 -10.82 3.92 -226.74 -0.89 -11.71 16 4 C 0.15 3.69 3.42 -4.98 -0.02 3.68 16 5 C -0.50 -14.57 9.10 -34.44 -0.31 -14.88 16 6 H 0.08 2.57 7.59 -52.48 -0.40 2.17 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -28.41 13.96 55.43 0.77 -27.64 16 9 Si 0.87 22.02 27.56 -169.99 -4.69 17.33 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.44 6.41 56.52 0.36 -6.08 16 13 C 0.08 1.40 2.44 -66.60 -0.16 1.23 16 14 H 0.04 0.74 5.91 -51.93 -0.31 0.43 16 15 C -0.12 -2.04 4.89 -25.07 -0.12 -2.16 16 16 C -0.12 -1.57 6.91 -24.74 -0.17 -1.74 16 17 C -0.15 -1.94 6.56 -25.02 -0.16 -2.10 16 18 C 0.11 1.62 4.06 -25.56 -0.10 1.51 16 19 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 20 O -0.53 -8.28 10.03 -35.23 -0.35 -8.63 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.06 1.14 6.18 -51.93 -0.32 0.82 16 23 H 0.04 0.68 6.51 -51.93 -0.34 0.34 16 24 H 0.08 1.44 5.94 -51.93 -0.31 1.13 16 25 H 0.08 1.82 6.98 -51.93 -0.36 1.45 16 26 H 0.03 0.82 4.47 -51.93 -0.23 0.58 16 27 H -0.02 -0.41 5.70 -51.93 -0.30 -0.70 16 28 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 1.70 7.07 -51.93 -0.37 1.33 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 35 H 0.36 3.80 9.11 45.56 0.42 4.22 16 LS Contribution 264.35 15.07 3.98 3.98 Total: -1.00 -32.23 264.35 -6.65 -38.88 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.65 Total: 2.29 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -0.83 Total: -14.51 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: -0.12 Total: -39.35 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.35 Total: -8.63 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.69 Total: 17.33 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.23 -6.65 -38.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252432345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.446 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds