Wall clock time and date at job start Mon Mar 30 2020 20:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47226 * 2 1 4 4 C 1.50701 * 109.47568 * 239.99791 * 2 1 3 5 5 H 1.08001 * 120.00161 * 245.49591 * 4 2 1 6 6 C 1.37879 * 119.99511 * 65.49247 * 4 2 1 7 7 N 1.31505 * 120.00328 * 8.07159 * 6 4 2 8 8 Si 1.86806 * 119.99751 * 188.07015 * 6 4 2 9 9 H 1.48498 * 109.46748 * 94.99038 * 8 6 4 10 10 H 1.48492 * 109.46965 * 214.98963 * 8 6 4 11 11 H 1.48496 * 109.47034 * 334.99048 * 8 6 4 12 12 N 1.46909 * 109.46956 * 119.99812 * 2 1 3 13 13 C 1.46900 * 110.99794 * 271.93991 * 12 2 1 14 14 H 1.08996 * 109.47363 * 343.13442 * 13 12 2 15 15 C 1.52999 * 109.46904 * 103.13703 * 13 12 2 16 16 C 1.53003 * 109.46997 * 223.13662 * 13 12 2 17 17 H 1.09001 * 109.87337 * 54.30079 * 16 13 12 18 18 C 1.54094 * 109.87744 * 175.30895 * 16 13 12 19 19 C 1.54816 * 104.18997 * 121.45605 * 18 16 13 20 20 C 1.54995 * 102.09165 * 20.87786 * 19 18 16 21 21 O 1.43746 * 109.87655 * 293.29559 * 16 13 12 22 22 H 1.08996 * 109.47662 * 303.81988 * 1 2 3 23 23 H 1.09004 * 109.47058 * 63.82459 * 1 2 3 24 24 H 1.09000 * 109.46922 * 183.82235 * 1 2 3 25 25 H 0.97006 * 120.00323 * 179.97438 * 7 6 4 26 26 H 1.00893 * 110.99889 * 35.89583 * 12 2 1 27 27 H 1.08992 * 109.47468 * 294.97496 * 15 13 12 28 28 H 1.09000 * 109.47215 * 54.97814 * 15 13 12 29 29 H 1.09005 * 109.47152 * 174.97317 * 15 13 12 30 30 H 1.09008 * 110.48904 * 240.12930 * 18 16 13 31 31 H 1.08992 * 110.49268 * 2.77616 * 18 16 13 32 32 H 1.08998 * 110.91249 * 139.07637 * 19 18 16 33 33 H 1.08998 * 110.90724 * 262.64575 * 19 18 16 34 34 H 1.08995 * 110.61817 * 81.47856 * 20 19 18 35 35 H 1.08998 * 110.61898 * 204.32194 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5782 -1.6374 -1.1338 6 6 1.7952 -0.1770 -2.4795 7 7 1.2732 1.0247 -2.5931 8 14 2.2154 -1.1613 -4.0106 9 1 1.0072 -1.8859 -4.4802 10 1 2.6864 -0.2413 -5.0767 11 1 3.2865 -2.1392 -3.6918 12 7 2.0196 -0.6925 1.1995 13 6 2.1513 0.2387 2.3280 14 1 2.1475 1.2632 1.9561 15 6 0.9791 0.0415 3.2913 16 6 3.4660 -0.0325 3.0622 17 1 4.2980 0.0071 2.3592 18 6 3.6701 1.0138 4.1750 19 6 3.7807 0.1733 5.4704 20 6 4.1709 -1.2220 4.9199 21 8 3.4176 -1.3247 3.6901 22 1 -0.3634 0.5719 0.8537 23 1 -0.3633 0.4533 -0.9223 24 1 -0.3633 -1.0254 0.0685 25 1 1.1067 1.4001 -3.4719 26 1 1.4207 -1.4684 1.4389 27 1 0.0498 0.3204 2.7948 28 1 0.9295 -1.0045 3.5940 29 1 1.1229 0.6680 4.1717 30 1 4.5882 1.5765 4.0058 31 1 2.8139 1.6861 4.2283 32 1 4.5603 0.5657 6.1234 33 1 2.8238 0.1331 5.9909 34 1 5.2408 -1.2692 4.7174 35 1 3.8788 -2.0058 5.6187 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252439707.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:49 Heat of formation + Delta-G solvation = -54.880749 kcal Electronic energy + Delta-G solvation = -14899.807702 eV Core-core repulsion = 12511.396307 eV Total energy + Delta-G solvation = -2388.411396 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.34029 -36.18345 -33.05248 -31.85445 -30.60434 -27.80516 -26.93092 -24.95492 -23.24489 -21.43176 -20.16236 -19.75576 -16.53212 -16.02425 -15.39876 -15.08701 -14.60887 -13.95079 -13.66526 -13.42784 -12.92405 -12.36410 -12.09103 -11.77537 -11.55048 -11.31494 -11.14070 -11.06413 -10.88767 -10.80306 -10.57638 -10.44534 -10.29540 -10.12421 -9.66327 -9.29876 -8.85081 -8.27642 -7.12266 -5.94146 -3.93452 3.36851 3.43409 3.48737 4.20451 4.50461 4.75450 4.89009 5.09502 5.21648 5.38222 5.46139 5.55528 5.62680 5.77257 5.82386 5.83245 5.93488 5.98263 6.11310 6.29176 6.47885 6.50946 6.60215 6.78725 6.85814 7.10855 7.30075 7.43126 7.69021 7.97396 8.31983 8.68852 8.71856 9.14429 9.70397 11.14935 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049198 B = 0.007149 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.992921 B = 3915.935608 C = 4139.793340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.209 3.791 3 H 0.038 0.962 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.893 3.107 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.674 5.674 13 C 0.086 3.914 14 H 0.075 0.925 15 C -0.169 4.169 16 C 0.091 3.909 17 H 0.071 0.929 18 C -0.155 4.155 19 C -0.153 4.153 20 C 0.043 3.957 21 O -0.360 6.360 22 H 0.011 0.989 23 H 0.070 0.930 24 H 0.029 0.971 25 H 0.258 0.742 26 H 0.330 0.670 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.787 -0.156 13.951 14.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.101 3.899 3 H 0.056 0.944 4 C -0.532 4.532 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.721 3.279 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.198 1.198 12 N -0.303 5.303 13 C -0.025 4.025 14 H 0.093 0.907 15 C -0.228 4.228 16 C 0.032 3.968 17 H 0.089 0.911 18 C -0.193 4.193 19 C -0.191 4.191 20 C -0.034 4.034 21 O -0.279 6.279 22 H 0.030 0.970 23 H 0.089 0.911 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.147 0.853 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.294 -0.165 13.516 13.913 hybrid contribution -0.684 -0.044 -0.568 0.891 sum 2.609 -0.209 12.948 13.210 Atomic orbital electron populations 1.22439 1.01142 0.98477 1.00160 1.19328 0.89162 0.94541 0.86885 0.94429 1.21189 1.34086 1.08161 0.89762 0.91939 1.24948 0.95726 0.94809 0.98984 1.69960 1.45586 1.14781 1.23491 0.86561 0.78506 0.80013 0.82813 1.20922 1.21482 1.19831 1.60707 1.56260 1.10011 1.03340 1.21719 0.92115 0.97123 0.91551 0.90699 1.22411 0.98870 1.02053 0.99460 1.22914 0.99138 0.81636 0.93085 0.91061 1.23061 1.02576 0.98980 0.94682 1.23097 1.02000 0.96279 0.97730 1.23499 0.96038 0.96677 0.87210 1.88999 1.73102 1.31087 1.34674 0.97034 0.91096 0.95218 0.93185 0.85285 0.92899 0.92082 0.93343 0.91063 0.90469 0.90912 0.90909 0.92783 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.08 37.15 0.34 -3.57 16 2 C 0.21 5.33 2.42 -68.86 -0.17 5.16 16 3 H 0.04 1.06 7.23 -51.93 -0.38 0.68 16 4 C -0.49 -14.01 8.77 -34.44 -0.30 -14.31 16 5 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 6 C 0.06 1.58 5.19 -17.82 -0.09 1.49 16 7 N -0.90 -26.30 12.09 55.43 0.67 -25.63 16 8 Si 0.89 21.95 29.55 -169.99 -5.02 16.93 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 12 N -0.67 -14.89 6.08 -100.95 -0.61 -15.51 16 13 C 0.09 1.58 2.43 -67.71 -0.16 1.42 16 14 H 0.07 1.45 7.14 -51.93 -0.37 1.08 16 15 C -0.17 -2.70 8.69 37.16 0.32 -2.38 16 16 C 0.09 1.50 3.35 -26.16 -0.09 1.41 16 17 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 18 C -0.15 -1.96 6.10 -25.20 -0.15 -2.12 16 19 C -0.15 -1.66 7.16 -24.72 -0.18 -1.83 16 20 C 0.04 0.53 7.72 38.21 0.29 0.82 16 21 O -0.36 -6.03 10.36 -35.23 -0.37 -6.39 16 22 H 0.01 0.23 6.64 -51.93 -0.34 -0.11 16 23 H 0.07 1.88 6.77 -51.93 -0.35 1.53 16 24 H 0.03 0.67 8.06 -51.93 -0.42 0.26 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.33 7.12 7.80 -39.30 -0.31 6.82 16 27 H 0.05 0.87 6.63 -51.93 -0.34 0.53 16 28 H 0.06 0.99 7.62 -51.93 -0.40 0.59 16 29 H 0.05 0.67 6.60 -51.93 -0.34 0.32 16 30 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.08 0.95 6.60 -51.93 -0.34 0.61 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 276.38 15.07 4.16 4.16 Total: -1.00 -29.63 276.38 -7.03 -36.66 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.67 Total: 3.68 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -0.19 Total: -13.91 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.06 Total: -41.14 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.37 Total: -6.39 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.63 -7.03 -36.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252439707.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.220 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds