Wall clock time and date at job start Mon Mar 30 2020 20:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47550 * 2 1 4 4 C 1.50702 * 109.46888 * 240.00002 * 2 1 3 5 5 H 1.08003 * 119.99779 * 239.99825 * 4 2 1 6 6 C 1.37879 * 120.00296 * 59.72772 * 4 2 1 7 7 N 1.31521 * 119.99564 * 0.27323 * 6 4 2 8 8 Si 1.86795 * 120.00387 * 180.27222 * 6 4 2 9 9 H 1.48506 * 109.47231 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47121 * 119.99725 * 8 6 4 11 11 H 1.48491 * 109.47388 * 240.00065 * 8 6 4 12 12 N 1.46897 * 109.46939 * 120.00301 * 2 1 3 13 13 C 1.46899 * 111.00023 * 274.99448 * 12 2 1 14 14 H 1.09002 * 109.46717 * 33.35861 * 13 12 2 15 15 C 1.53003 * 109.47303 * 273.35653 * 13 12 2 16 16 C 1.52995 * 109.47262 * 153.35187 * 13 12 2 17 17 H 1.08997 * 110.27653 * 179.72002 * 16 13 12 18 18 C 1.54950 * 110.31293 * 301.92225 * 16 13 12 19 19 C 1.55300 * 100.94232 * 155.35553 * 18 16 13 20 20 C 1.54380 * 102.25739 * 325.86641 * 19 18 16 21 21 O 1.43244 * 107.58585 * 21.35744 * 20 19 18 22 22 H 1.08997 * 109.47587 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46991 * 300.00229 * 1 2 3 24 24 H 1.09001 * 109.47061 * 59.99846 * 1 2 3 25 25 H 0.96998 * 119.99262 * 179.97438 * 7 6 4 26 26 H 1.00902 * 111.00377 * 38.95294 * 12 2 1 27 27 H 1.08999 * 109.46912 * 299.99729 * 15 13 12 28 28 H 1.09000 * 109.46971 * 59.99728 * 15 13 12 29 29 H 1.09000 * 109.46803 * 179.97438 * 15 13 12 30 30 H 1.08992 * 111.12171 * 273.27693 * 18 16 13 31 31 H 1.09001 * 111.12078 * 37.44033 * 18 16 13 32 32 H 1.09003 * 110.85031 * 207.67687 * 19 18 16 33 33 H 1.09000 * 110.84847 * 84.06200 * 19 18 16 34 34 H 1.08992 * 109.83257 * 261.84510 * 20 19 18 35 35 H 1.08998 * 109.82974 * 140.86678 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2427 -2.4828 7 7 0.9384 0.8267 -2.6034 8 14 2.3108 -1.1277 -4.0080 9 1 3.1364 -2.2941 -3.6039 10 1 1.1524 -1.5961 -4.8105 11 1 3.1331 -0.1970 -4.8221 12 7 2.0196 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2749 0.9511 2.2752 15 6 3.4281 0.9507 2.3453 16 6 1.9358 -0.5753 3.6440 17 1 1.9856 0.0911 4.5051 18 6 0.5994 -1.3597 3.6449 19 6 0.9367 -2.5155 4.6258 20 6 2.4324 -2.7651 4.3363 21 8 2.9598 -1.5790 3.7306 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7012 1.1559 -3.4844 26 1 1.4495 -1.4980 1.4100 27 1 4.2356 0.2221 2.4170 28 1 3.5325 1.5191 1.4212 29 1 3.4745 1.6300 3.1965 30 1 -0.2161 -0.7457 4.0268 31 1 0.3682 -1.7428 2.6510 32 1 0.3445 -3.4021 4.3989 33 1 0.7884 -2.2029 5.6594 34 1 2.5415 -3.6083 3.6545 35 1 2.9600 -2.9705 5.2677 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252439708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:52 Heat of formation + Delta-G solvation = -51.595390 kcal Electronic energy + Delta-G solvation = -15060.272049 eV Core-core repulsion = 12672.003118 eV Total energy + Delta-G solvation = -2388.268932 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.43949 -36.09517 -33.06125 -31.88424 -30.65522 -27.96114 -26.87891 -25.07912 -22.98510 -21.41303 -20.46638 -19.32675 -16.72782 -16.32053 -15.57595 -14.88183 -14.65210 -13.86690 -13.70195 -13.15635 -12.88413 -12.38797 -12.11938 -11.68859 -11.58730 -11.37838 -11.27489 -11.08921 -10.90163 -10.71913 -10.54363 -10.36409 -10.21257 -10.00109 -9.77940 -9.13281 -8.86283 -8.30460 -7.07926 -5.93061 -3.95245 3.35130 3.42705 3.48950 4.06599 4.49049 4.62249 4.90352 5.02995 5.26130 5.33085 5.38756 5.42066 5.60229 5.76501 5.83536 5.91074 5.95398 6.12353 6.20073 6.26921 6.51505 6.65551 6.72532 6.86225 7.01229 7.16100 7.33459 7.48755 7.78995 7.97692 8.36631 8.66155 8.72927 9.13346 9.70031 11.14154 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041423 B = 0.007810 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.789589 B = 3584.342389 C = 3638.005036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.209 3.791 3 H 0.034 0.966 4 C -0.489 4.489 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.286 1.286 12 N -0.671 5.671 13 C 0.085 3.915 14 H 0.044 0.956 15 C -0.131 4.131 16 C 0.082 3.918 17 H 0.065 0.935 18 C -0.159 4.159 19 C -0.154 4.154 20 C 0.050 3.950 21 O -0.361 6.361 22 H 0.025 0.975 23 H 0.003 0.997 24 H 0.089 0.911 25 H 0.258 0.742 26 H 0.324 0.676 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.966 -3.487 12.872 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.101 3.899 3 H 0.052 0.948 4 C -0.528 4.528 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.212 1.212 12 N -0.304 5.304 13 C -0.026 4.026 14 H 0.062 0.938 15 C -0.189 4.189 16 C 0.024 3.976 17 H 0.083 0.917 18 C -0.197 4.197 19 C -0.192 4.192 20 C -0.027 4.027 21 O -0.280 6.280 22 H 0.044 0.956 23 H 0.022 0.978 24 H 0.107 0.893 25 H 0.068 0.932 26 H 0.143 0.857 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.156 -3.276 12.494 12.917 hybrid contribution -1.043 -0.342 -0.577 1.240 sum -1.200 -3.618 11.916 12.511 Atomic orbital electron populations 1.22451 1.01025 0.98968 1.00404 1.19235 0.89275 0.94553 0.86814 0.94773 1.21226 1.29661 1.12343 0.89603 0.91916 1.24955 0.95446 0.95271 0.99011 1.69899 1.37605 1.23388 1.23082 0.86473 0.78444 0.79728 0.82946 1.19742 1.21318 1.21187 1.60796 1.58260 1.08476 1.02830 1.21565 0.97432 0.94019 0.89563 0.93799 1.21671 0.97593 0.99323 1.00304 1.23204 0.86078 0.90485 0.97804 0.91712 1.23403 0.98294 0.97146 1.00823 1.23090 0.96877 0.99450 0.99784 1.23060 0.92792 0.89492 0.97310 1.88509 1.34612 1.22968 1.81873 0.95559 0.97752 0.89273 0.93246 0.85655 0.91780 0.92469 0.94215 0.90337 0.89556 0.90307 0.91054 0.91447 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.92 37.16 0.33 -3.76 16 2 C 0.21 5.34 2.39 -68.87 -0.16 5.17 16 3 H 0.03 0.96 7.24 -51.93 -0.38 0.58 16 4 C -0.49 -13.85 8.84 -34.44 -0.30 -14.15 16 5 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.40 16 7 N -0.90 -26.09 11.31 55.43 0.63 -25.47 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 N -0.67 -14.72 5.89 -100.96 -0.59 -15.31 16 13 C 0.08 1.58 2.36 -67.71 -0.16 1.42 16 14 H 0.04 0.84 7.11 -51.93 -0.37 0.47 16 15 C -0.13 -2.40 9.30 37.16 0.35 -2.05 16 16 C 0.08 1.28 3.19 -25.70 -0.08 1.19 16 17 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 18 C -0.16 -2.15 6.40 -24.48 -0.16 -2.31 16 19 C -0.15 -1.73 7.02 -24.79 -0.17 -1.90 16 20 C 0.05 0.66 7.79 37.88 0.30 0.95 16 21 O -0.36 -6.04 10.36 -35.23 -0.37 -6.41 16 22 H 0.03 0.60 8.13 -51.93 -0.42 0.18 16 23 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 24 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.32 6.80 5.75 -39.29 -0.23 6.57 16 27 H 0.06 1.23 7.79 -51.93 -0.40 0.82 16 28 H 0.06 1.14 7.55 -51.93 -0.39 0.75 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.32 5.94 -51.93 -0.31 1.01 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 276.06 15.07 4.16 4.16 Total: -1.00 -29.56 276.06 -7.06 -36.62 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.70 Total: 3.53 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -0.16 Total: -14.03 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.03 Total: -40.78 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.37 Total: -6.41 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.56 -7.06 -36.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252439708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.978 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds