Wall clock time and date at job start Mon Mar 30 2020 20:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47550 * 2 1 4 4 C 1.50702 * 109.46888 * 240.00002 * 2 1 3 5 5 H 1.08003 * 119.99779 * 239.99825 * 4 2 1 6 6 C 1.37879 * 120.00296 * 59.72772 * 4 2 1 7 7 N 1.31521 * 119.99564 * 0.27323 * 6 4 2 8 8 Si 1.86795 * 120.00387 * 180.27222 * 6 4 2 9 9 H 1.48506 * 109.47231 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47121 * 119.99725 * 8 6 4 11 11 H 1.48491 * 109.47388 * 240.00065 * 8 6 4 12 12 N 1.46897 * 109.46939 * 120.00301 * 2 1 3 13 13 C 1.46899 * 111.00023 * 274.99448 * 12 2 1 14 14 H 1.09002 * 109.46717 * 33.35861 * 13 12 2 15 15 C 1.53003 * 109.47303 * 273.35653 * 13 12 2 16 16 C 1.52995 * 109.47262 * 153.35187 * 13 12 2 17 17 H 1.08997 * 110.27653 * 179.72002 * 16 13 12 18 18 C 1.54950 * 110.31293 * 301.92225 * 16 13 12 19 19 C 1.55300 * 100.94232 * 155.35553 * 18 16 13 20 20 C 1.54380 * 102.25739 * 325.86641 * 19 18 16 21 21 O 1.43244 * 107.58585 * 21.35744 * 20 19 18 22 22 H 1.08997 * 109.47587 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46991 * 300.00229 * 1 2 3 24 24 H 1.09001 * 109.47061 * 59.99846 * 1 2 3 25 25 H 0.96998 * 119.99262 * 179.97438 * 7 6 4 26 26 H 1.00902 * 111.00377 * 38.95294 * 12 2 1 27 27 H 1.08999 * 109.46912 * 299.99729 * 15 13 12 28 28 H 1.09000 * 109.46971 * 59.99728 * 15 13 12 29 29 H 1.09000 * 109.46803 * 179.97438 * 15 13 12 30 30 H 1.08992 * 111.12171 * 273.27693 * 18 16 13 31 31 H 1.09001 * 111.12078 * 37.44033 * 18 16 13 32 32 H 1.09003 * 110.85031 * 207.67687 * 19 18 16 33 33 H 1.09000 * 110.84847 * 84.06200 * 19 18 16 34 34 H 1.08992 * 109.83257 * 261.84510 * 20 19 18 35 35 H 1.08998 * 109.82974 * 140.86678 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2427 -2.4828 7 7 0.9384 0.8267 -2.6034 8 14 2.3108 -1.1277 -4.0080 9 1 3.1364 -2.2941 -3.6039 10 1 1.1524 -1.5961 -4.8105 11 1 3.1331 -0.1970 -4.8221 12 7 2.0196 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2749 0.9511 2.2752 15 6 3.4281 0.9507 2.3453 16 6 1.9358 -0.5753 3.6440 17 1 1.9856 0.0911 4.5051 18 6 0.5994 -1.3597 3.6449 19 6 0.9367 -2.5155 4.6258 20 6 2.4324 -2.7651 4.3363 21 8 2.9598 -1.5790 3.7306 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7012 1.1559 -3.4844 26 1 1.4495 -1.4980 1.4100 27 1 4.2356 0.2221 2.4170 28 1 3.5325 1.5191 1.4212 29 1 3.4745 1.6300 3.1965 30 1 -0.2161 -0.7457 4.0268 31 1 0.3682 -1.7428 2.6510 32 1 0.3445 -3.4021 4.3989 33 1 0.7884 -2.2029 5.6594 34 1 2.5415 -3.6083 3.6545 35 1 2.9600 -2.9705 5.2677 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252439708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:52 Heat of formation + Delta-G solvation = -71.402516 kcal Electronic energy + Delta-G solvation = -15061.130951 eV Core-core repulsion = 12672.003118 eV Total energy + Delta-G solvation = -2389.127833 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.64306 -37.78876 -34.97427 -32.94109 -32.49298 -29.15885 -28.68999 -27.21899 -24.27205 -22.45615 -22.25505 -20.85197 -18.48912 -17.69433 -17.03481 -16.63254 -16.19721 -15.30863 -15.04980 -14.76509 -14.26326 -14.06826 -13.59004 -13.54924 -13.07533 -12.91854 -12.77397 -12.62597 -12.45458 -12.30523 -12.19295 -11.91638 -11.87623 -11.63911 -11.35771 -10.97548 -10.47213 -10.27802 -8.85223 -8.08842 -6.19241 1.40743 1.42493 1.55232 2.44483 2.95909 3.19120 3.56891 3.71524 3.83063 4.03573 4.25078 4.32089 4.38308 4.53238 4.71886 4.78946 4.85755 4.87471 4.90218 4.95622 4.99850 5.04185 5.09424 5.20610 5.29859 5.44892 5.51171 5.71259 5.86058 6.23991 6.32984 6.72164 6.91081 6.99817 7.50995 8.96789 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041423 B = 0.007810 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.789589 B = 3584.342389 C = 3638.005036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.216 3.784 3 H 0.002 0.998 4 C -0.512 4.512 5 H 0.050 0.950 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.281 1.281 12 N -0.677 5.677 13 C 0.079 3.921 14 H 0.041 0.959 15 C -0.125 4.125 16 C 0.085 3.915 17 H 0.088 0.912 18 C -0.159 4.159 19 C -0.142 4.142 20 C 0.041 3.959 21 O -0.391 6.391 22 H 0.029 0.971 23 H 0.026 0.974 24 H 0.061 0.939 25 H 0.260 0.740 26 H 0.329 0.671 27 H 0.051 0.949 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -4.270 14.182 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.107 3.893 3 H 0.020 0.980 4 C -0.551 4.551 5 H 0.068 0.932 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.207 1.207 12 N -0.310 5.310 13 C -0.031 4.031 14 H 0.059 0.941 15 C -0.183 4.183 16 C 0.027 3.973 17 H 0.106 0.894 18 C -0.197 4.197 19 C -0.179 4.179 20 C -0.035 4.035 21 O -0.310 6.310 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.149 0.851 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.565 -4.067 13.821 14.418 hybrid contribution -0.885 -0.084 -0.941 1.294 sum -1.450 -4.152 12.881 13.611 Atomic orbital electron populations 1.22228 0.99996 0.99048 1.00094 1.18967 0.89918 0.92693 0.87708 0.98045 1.21490 1.30014 1.12324 0.91269 0.93215 1.25703 0.95531 0.95950 1.01797 1.70016 1.38152 1.24323 1.23831 0.85490 0.78088 0.78591 0.79337 1.19565 1.20411 1.20739 1.60655 1.58126 1.09120 1.03125 1.21667 0.97245 0.93977 0.90192 0.94147 1.21621 0.97193 0.99244 1.00282 1.23181 0.87032 0.90709 0.96348 0.89413 1.23385 0.97754 0.98087 1.00509 1.23071 0.95435 0.99058 1.00348 1.23275 0.94420 0.87989 0.97838 1.88472 1.35722 1.24265 1.82574 0.95140 0.95457 0.92025 0.93049 0.85070 0.92969 0.95168 0.91018 0.88479 0.91749 0.88886 0.88723 0.92091 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.49 8.92 71.98 0.64 -6.85 16 2 C 0.22 11.25 2.39 44.17 0.11 11.35 16 3 H 0.00 0.09 7.24 -2.39 -0.02 0.08 16 4 C -0.51 -29.52 8.84 25.60 0.23 -29.30 16 5 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 6 C 0.01 0.45 5.30 84.65 0.45 0.90 16 7 N -0.92 -54.19 11.31 21.45 0.24 -53.95 16 8 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 N -0.68 -29.97 5.89 -473.32 -2.79 -32.76 16 13 C 0.08 2.92 2.36 44.91 0.11 3.03 16 14 H 0.04 1.52 7.11 -2.39 -0.02 1.50 16 15 C -0.13 -4.58 9.30 71.98 0.67 -3.92 16 16 C 0.08 2.47 3.19 31.26 0.10 2.57 16 17 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 18 C -0.16 -3.92 6.40 32.05 0.21 -3.72 16 19 C -0.14 -2.70 7.02 31.85 0.22 -2.48 16 20 C 0.04 0.97 7.79 72.45 0.56 1.54 16 21 O -0.39 -12.48 10.36 -148.98 -1.54 -14.03 16 22 H 0.03 1.40 8.13 -2.39 -0.02 1.38 16 23 H 0.03 1.15 7.45 -2.39 -0.02 1.13 16 24 H 0.06 3.35 6.06 -2.39 -0.01 3.34 16 25 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 26 H 0.33 13.83 5.75 -89.69 -0.52 13.31 16 27 H 0.05 2.00 7.79 -2.39 -0.02 1.98 16 28 H 0.03 1.22 7.55 -2.39 -0.02 1.20 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.06 1.88 5.94 -2.39 -0.01 1.86 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -63.75 276.06 1.77 -61.98 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.54 Total: 18.38 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 3.29 Total: -26.87 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -2.55 Total: -86.71 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -1.54 Total: -14.03 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -63.75 1.77 -61.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252439708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.420 kcal (2) G-P(sol) polarization free energy of solvation -63.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds