Wall clock time and date at job start Mon Mar 30 2020 20:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46786 * 2 1 4 4 C 1.50697 * 109.47097 * 240.00306 * 2 1 3 5 5 H 1.08001 * 120.00371 * 239.99920 * 4 2 1 6 6 C 1.37889 * 120.00041 * 59.99201 * 4 2 1 7 7 N 1.31516 * 119.99957 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99843 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47381 * 60.00338 * 8 6 4 10 10 H 1.48501 * 109.47049 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47079 * 300.00076 * 8 6 4 12 12 N 1.46895 * 109.47626 * 120.00161 * 2 1 3 13 13 C 1.46907 * 110.99712 * 274.99983 * 12 2 1 14 14 H 1.09000 * 109.47216 * 35.00305 * 13 12 2 15 15 C 1.52999 * 109.47222 * 274.99740 * 13 12 2 16 16 C 1.53006 * 109.46775 * 155.00009 * 13 12 2 17 17 H 1.08995 * 111.01892 * 55.77543 * 16 13 12 18 18 C 1.55305 * 111.12200 * 180.02562 * 16 13 12 19 19 C 1.54382 * 102.43395 * 152.15163 * 18 16 13 20 20 O 1.43232 * 107.59109 * 338.54226 * 19 18 16 21 21 C 1.43649 * 109.97368 * 358.28680 * 20 19 18 22 22 H 1.09010 * 109.46781 * 299.99726 * 1 2 3 23 23 H 1.08993 * 109.47649 * 59.99742 * 1 2 3 24 24 H 1.09001 * 109.46948 * 180.02562 * 1 2 3 25 25 H 0.96992 * 119.99876 * 179.97438 * 7 6 4 26 26 H 1.00904 * 111.00183 * 38.95022 * 12 2 1 27 27 H 1.09006 * 109.46812 * 300.00460 * 15 13 12 28 28 H 1.09007 * 109.46697 * 60.00011 * 15 13 12 29 29 H 1.08995 * 109.47137 * 180.02562 * 15 13 12 30 30 H 1.09002 * 110.85041 * 33.86009 * 18 16 13 31 31 H 1.09001 * 110.84389 * 270.44146 * 18 16 13 32 32 H 1.09009 * 109.82643 * 98.05629 * 19 18 16 33 33 H 1.08995 * 109.83122 * 219.02553 * 19 18 16 34 34 H 1.08999 * 110.31137 * 143.34271 * 21 20 19 35 35 H 1.09000 * 110.31061 * 265.41699 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 1.8257 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2205 11 1 3.8062 -1.1207 -4.0083 12 7 2.0198 -0.6925 1.1993 13 6 2.0826 0.2227 2.3468 14 1 1.2577 0.9329 2.2907 15 6 3.4112 0.9810 2.3223 16 6 1.9773 -0.5797 3.6454 17 1 2.7477 -1.3492 3.6930 18 6 2.0391 0.3526 4.8859 19 6 1.2326 -0.4394 5.9374 20 8 0.3896 -1.3590 5.2337 21 6 0.5594 -1.1947 3.8168 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.7092 1.1618 -3.4844 26 1 1.4497 -1.4979 1.4100 27 1 4.2361 0.2706 2.3784 28 1 3.4862 1.5526 1.3971 29 1 3.4580 1.6596 3.1739 30 1 1.5651 1.3112 4.6748 31 1 3.0690 0.4948 5.2133 32 1 1.9130 -0.9865 6.5901 33 1 0.6224 0.2445 6.5273 34 1 0.5031 -2.1604 3.3145 35 1 -0.1981 -0.5183 3.4209 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253081030.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:04 Heat of formation + Delta-G solvation = -59.046727 kcal Electronic energy + Delta-G solvation = -14860.846369 eV Core-core repulsion = 12472.254323 eV Total energy + Delta-G solvation = -2388.592046 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.48229 -36.54398 -33.63049 -31.63666 -29.77670 -28.64086 -26.94607 -25.12383 -22.68141 -22.09587 -20.13405 -19.64751 -16.65355 -16.47193 -15.63425 -15.05458 -14.62595 -14.35695 -13.51104 -13.33678 -12.89386 -12.55196 -12.37570 -11.96987 -11.72759 -11.41092 -11.20125 -11.07150 -10.86306 -10.83893 -10.52995 -10.34297 -10.33741 -10.05959 -9.70565 -9.45097 -8.97622 -8.34639 -7.24776 -5.97476 -4.00604 3.35212 3.39042 3.42491 3.95793 4.43565 4.56711 4.82242 4.98699 5.15180 5.32605 5.34267 5.41608 5.63348 5.73141 5.75888 5.88321 5.91536 5.99328 6.09290 6.28099 6.39411 6.55537 6.69151 6.80278 6.83497 7.04732 7.11434 7.38785 7.74657 7.90053 8.29184 8.54506 8.63161 9.06494 9.64691 11.09604 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055113 B = 0.006856 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.926363 B = 4082.907247 C = 4212.711375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.035 0.965 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.680 5.680 13 C 0.096 3.904 14 H 0.037 0.963 15 C -0.135 4.135 16 C -0.120 4.120 17 H 0.091 0.909 18 C -0.149 4.149 19 C 0.051 3.949 20 O -0.389 6.389 21 C 0.052 3.948 22 H 0.004 0.996 23 H 0.089 0.911 24 H 0.027 0.973 25 H 0.260 0.740 26 H 0.324 0.676 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 -0.341 12.593 12.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.311 5.311 13 C -0.015 4.015 14 H 0.055 0.945 15 C -0.193 4.193 16 C -0.139 4.139 17 H 0.110 0.890 18 C -0.187 4.187 19 C -0.025 4.025 20 O -0.308 6.308 21 C -0.024 4.024 22 H 0.023 0.977 23 H 0.107 0.893 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.141 0.859 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.604 -0.279 12.370 12.477 hybrid contribution -0.572 -0.099 -0.803 0.991 sum 1.032 -0.378 11.567 11.619 Atomic orbital electron populations 1.22447 1.00824 0.99159 1.00429 1.19192 0.89437 0.94474 0.86490 0.94758 1.21129 1.30195 1.12426 0.89637 0.92026 1.24954 0.95352 0.95214 0.99030 1.69872 1.37332 1.23197 1.23424 0.86569 0.79158 0.79614 0.82073 1.20384 1.21487 1.20325 1.60896 1.58086 1.08831 1.03263 1.21341 0.97172 0.94043 0.88931 0.94521 1.21770 0.97287 0.99368 1.00856 1.23154 0.97483 0.98205 0.95089 0.89029 1.23149 1.01200 0.99378 0.94980 1.23095 0.92864 0.91675 0.94897 1.88365 1.64825 1.59541 1.18087 1.23599 0.96137 1.01313 0.81385 0.97736 0.89267 0.95360 0.93040 0.85870 0.92510 0.92204 0.93787 0.90552 0.90054 0.91622 0.91884 0.89538 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 8.92 37.16 0.33 -3.72 16 2 C 0.21 5.25 2.38 -68.87 -0.16 5.09 16 3 H 0.03 0.94 7.11 -51.93 -0.37 0.57 16 4 C -0.50 -13.66 8.84 -34.44 -0.30 -13.96 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.05 1.52 5.30 -17.81 -0.09 1.43 16 7 N -0.90 -25.71 11.32 55.43 0.63 -25.08 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.68 -14.07 6.04 -100.95 -0.61 -14.68 16 13 C 0.10 1.64 2.01 -67.71 -0.14 1.51 16 14 H 0.04 0.68 7.05 -51.93 -0.37 0.31 16 15 C -0.13 -2.21 9.18 37.16 0.34 -1.87 16 16 C -0.12 -1.71 2.73 -88.06 -0.24 -1.95 16 17 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 18 C -0.15 -1.75 5.35 -24.78 -0.13 -1.88 16 19 C 0.05 0.60 7.80 37.88 0.30 0.90 16 20 O -0.39 -5.79 11.36 -35.23 -0.40 -6.19 16 21 C 0.05 0.76 6.61 38.49 0.25 1.01 16 22 H 0.00 0.08 7.43 -51.92 -0.39 -0.31 16 23 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 24 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.32 6.39 7.16 -39.29 -0.28 6.11 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.11 7.43 -51.93 -0.39 0.72 16 29 H 0.04 0.59 7.30 -51.93 -0.38 0.21 16 30 H 0.08 0.89 8.03 -51.93 -0.42 0.48 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.24 7.81 -51.93 -0.41 0.83 16 35 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 LS Contribution 277.03 15.07 4.17 4.17 Total: -1.00 -28.61 277.03 -6.88 -35.49 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.80 Total: 3.21 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 0.15 Total: -13.44 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.02 Total: -39.76 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.40 Total: -6.19 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.61 -6.88 -35.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253081030.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.556 kcal (2) G-P(sol) polarization free energy of solvation -28.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds