Wall clock time and date at job start Mon Mar 30 2020 20:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46786 * 2 1 4 4 C 1.50697 * 109.47097 * 240.00306 * 2 1 3 5 5 H 1.08001 * 120.00371 * 239.99920 * 4 2 1 6 6 C 1.37889 * 120.00041 * 59.99201 * 4 2 1 7 7 N 1.31516 * 119.99957 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99843 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47381 * 60.00338 * 8 6 4 10 10 H 1.48501 * 109.47049 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47079 * 300.00076 * 8 6 4 12 12 N 1.46895 * 109.47626 * 120.00161 * 2 1 3 13 13 C 1.46907 * 110.99712 * 274.99983 * 12 2 1 14 14 H 1.09000 * 109.47216 * 35.00305 * 13 12 2 15 15 C 1.52999 * 109.47222 * 274.99740 * 13 12 2 16 16 C 1.53006 * 109.46775 * 155.00009 * 13 12 2 17 17 H 1.08995 * 111.01892 * 55.77543 * 16 13 12 18 18 C 1.55305 * 111.12200 * 180.02562 * 16 13 12 19 19 C 1.54382 * 102.43395 * 152.15163 * 18 16 13 20 20 O 1.43232 * 107.59109 * 338.54226 * 19 18 16 21 21 C 1.43649 * 109.97368 * 358.28680 * 20 19 18 22 22 H 1.09010 * 109.46781 * 299.99726 * 1 2 3 23 23 H 1.08993 * 109.47649 * 59.99742 * 1 2 3 24 24 H 1.09001 * 109.46948 * 180.02562 * 1 2 3 25 25 H 0.96992 * 119.99876 * 179.97438 * 7 6 4 26 26 H 1.00904 * 111.00183 * 38.95022 * 12 2 1 27 27 H 1.09006 * 109.46812 * 300.00460 * 15 13 12 28 28 H 1.09007 * 109.46697 * 60.00011 * 15 13 12 29 29 H 1.08995 * 109.47137 * 180.02562 * 15 13 12 30 30 H 1.09002 * 110.85041 * 33.86009 * 18 16 13 31 31 H 1.09001 * 110.84389 * 270.44146 * 18 16 13 32 32 H 1.09009 * 109.82643 * 98.05629 * 19 18 16 33 33 H 1.08995 * 109.83122 * 219.02553 * 19 18 16 34 34 H 1.08999 * 110.31137 * 143.34271 * 21 20 19 35 35 H 1.09000 * 110.31061 * 265.41699 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 1.8257 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2205 11 1 3.8062 -1.1207 -4.0083 12 7 2.0198 -0.6925 1.1993 13 6 2.0826 0.2227 2.3468 14 1 1.2577 0.9329 2.2907 15 6 3.4112 0.9810 2.3223 16 6 1.9773 -0.5797 3.6454 17 1 2.7477 -1.3492 3.6930 18 6 2.0391 0.3526 4.8859 19 6 1.2326 -0.4394 5.9374 20 8 0.3896 -1.3590 5.2337 21 6 0.5594 -1.1947 3.8168 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.7092 1.1618 -3.4844 26 1 1.4497 -1.4979 1.4100 27 1 4.2361 0.2706 2.3784 28 1 3.4862 1.5526 1.3971 29 1 3.4580 1.6596 3.1739 30 1 1.5651 1.3112 4.6748 31 1 3.0690 0.4948 5.2133 32 1 1.9130 -0.9865 6.5901 33 1 0.6224 0.2445 6.5273 34 1 0.5031 -2.1604 3.3145 35 1 -0.1981 -0.5183 3.4209 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253081030.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:03 Heat of formation + Delta-G solvation = -78.251562 kcal Electronic energy + Delta-G solvation = -14861.679153 eV Core-core repulsion = 12472.254323 eV Total energy + Delta-G solvation = -2389.424830 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61875 -38.11814 -35.37675 -33.31155 -31.12052 -29.81616 -28.62857 -27.22309 -24.03232 -23.15566 -21.83665 -21.05692 -18.43456 -17.68427 -17.08457 -16.69178 -16.10575 -15.72222 -15.06095 -14.70144 -14.38211 -14.01846 -13.73620 -13.62087 -13.20150 -13.01976 -12.85216 -12.75678 -12.36518 -12.22421 -12.16459 -12.04510 -11.71154 -11.65562 -11.33324 -10.99081 -10.49833 -10.46745 -8.96140 -8.08757 -6.19663 1.43883 1.45330 1.53079 2.44691 2.91322 3.19655 3.42717 3.59877 3.92540 3.95373 4.25292 4.30669 4.44880 4.49162 4.65218 4.74615 4.77041 4.85987 4.88425 4.91359 4.94951 5.02389 5.07801 5.20744 5.28280 5.42898 5.49389 5.70273 5.84954 6.01409 6.29662 6.67227 6.86012 6.96259 7.50399 8.96638 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055113 B = 0.006856 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.926363 B = 4082.907247 C = 4212.711375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.219 3.781 3 H 0.003 0.997 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.683 5.683 13 C 0.096 3.904 14 H 0.024 0.976 15 C -0.130 4.130 16 C -0.113 4.113 17 H 0.094 0.906 18 C -0.142 4.142 19 C 0.046 3.954 20 O -0.406 6.406 21 C 0.053 3.947 22 H 0.022 0.978 23 H 0.061 0.939 24 H 0.031 0.969 25 H 0.260 0.740 26 H 0.330 0.670 27 H 0.059 0.941 28 H 0.028 0.972 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.773 -0.794 13.760 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.110 3.890 3 H 0.021 0.979 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.314 5.314 13 C -0.014 4.014 14 H 0.042 0.958 15 C -0.188 4.188 16 C -0.132 4.132 17 H 0.113 0.887 18 C -0.180 4.180 19 C -0.030 4.030 20 O -0.326 6.326 21 C -0.024 4.024 22 H 0.041 0.959 23 H 0.079 0.921 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.147 0.853 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.231 -0.736 13.561 13.763 hybrid contribution -0.764 0.067 -1.098 1.340 sum 1.467 -0.669 12.462 12.566 Atomic orbital electron populations 1.22253 1.00272 0.99142 0.99908 1.18911 0.89700 0.92794 0.87601 0.97870 1.21452 1.30363 1.12460 0.91135 0.92732 1.25719 0.95494 0.95883 1.01892 1.70002 1.38098 1.24287 1.23997 0.85586 0.78631 0.78681 0.78540 1.19679 1.21064 1.19932 1.60775 1.57753 1.09410 1.03451 1.21391 0.97169 0.93657 0.89143 0.95835 1.21735 0.96781 0.99554 1.00713 1.23018 0.97337 0.98438 0.94415 0.88749 1.23151 1.02670 0.98709 0.93446 1.23319 0.93108 0.91762 0.94847 1.88348 1.65767 1.60567 1.17961 1.23528 0.96051 1.01068 0.81710 0.95862 0.92062 0.94986 0.93052 0.85271 0.92237 0.95242 0.90500 0.90419 0.87833 0.89844 0.90437 0.89647 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.55 8.92 71.98 0.64 -6.91 16 2 C 0.22 11.02 2.38 44.17 0.11 11.12 16 3 H 0.00 0.19 7.11 -2.39 -0.02 0.17 16 4 C -0.52 -28.74 8.84 25.60 0.23 -28.51 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.45 5.30 84.66 0.45 0.90 16 7 N -0.92 -53.58 11.32 21.45 0.24 -53.34 16 8 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 N -0.68 -28.18 6.04 -473.30 -2.86 -31.04 16 13 C 0.10 3.23 2.01 44.92 0.09 3.32 16 14 H 0.02 0.86 7.05 -2.39 -0.02 0.85 16 15 C -0.13 -4.11 9.18 71.98 0.66 -3.45 16 16 C -0.11 -3.00 2.73 -9.14 -0.02 -3.02 16 17 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 18 C -0.14 -2.89 5.35 31.86 0.17 -2.72 16 19 C 0.05 0.93 7.80 72.45 0.56 1.50 16 20 O -0.41 -11.31 11.36 -148.98 -1.69 -13.00 16 21 C 0.05 1.48 6.61 72.84 0.48 1.96 16 22 H 0.02 0.99 7.43 -2.38 -0.02 0.97 16 23 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 24 H 0.03 1.47 8.13 -2.39 -0.02 1.45 16 25 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 26 H 0.33 12.87 7.16 -89.69 -0.64 12.23 16 27 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.03 1.09 7.43 -2.38 -0.02 1.07 16 29 H 0.08 1.89 7.30 -2.39 -0.02 1.88 16 30 H 0.08 1.59 8.03 -2.39 -0.02 1.57 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.09 2.37 7.81 -2.39 -0.02 2.35 16 35 H 0.05 1.49 7.99 -2.39 -0.02 1.47 16 Total: -1.00 -61.01 277.03 1.49 -59.52 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.41 Total: 17.43 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 3.37 Total: -25.80 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -2.62 Total: -84.38 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -1.69 Total: -13.00 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -61.01 1.49 -59.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253081030.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.735 kcal (2) G-P(sol) polarization free energy of solvation -61.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds