Wall clock time and date at job start Mon Mar 30 2020 20:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46769 * 2 1 4 4 C 1.50695 * 109.46937 * 240.00318 * 2 1 3 5 5 H 1.08001 * 119.99721 * 239.99823 * 4 2 1 6 6 C 1.37875 * 120.00425 * 60.00107 * 4 2 1 7 7 N 1.31511 * 120.00101 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00150 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47217 * 59.99474 * 8 6 4 10 10 H 1.48498 * 109.47045 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46758 * 299.99979 * 8 6 4 12 12 N 1.46896 * 109.46684 * 119.99928 * 2 1 3 13 13 C 1.46893 * 111.00190 * 268.70886 * 12 2 1 14 14 H 1.08999 * 109.47152 * 343.10562 * 13 12 2 15 15 C 1.53008 * 109.47145 * 103.09962 * 13 12 2 16 16 C 1.52997 * 109.47623 * 223.09786 * 13 12 2 17 17 H 1.09000 * 110.80068 * 51.29299 * 16 13 12 18 18 C 1.54807 * 110.91241 * 174.92239 * 16 13 12 19 19 C 1.54105 * 104.18810 * 139.11524 * 18 16 13 20 20 O 1.43739 * 107.29489 * 2.03032 * 19 18 16 21 21 C 1.44388 * 106.97542 * 333.48918 * 20 19 18 22 22 H 1.08998 * 109.47084 * 184.78770 * 1 2 3 23 23 H 1.08997 * 109.47317 * 304.79061 * 1 2 3 24 24 H 1.09010 * 109.46959 * 64.79142 * 1 2 3 25 25 H 0.96997 * 120.00473 * 179.97438 * 7 6 4 26 26 H 1.00894 * 111.00257 * 32.67094 * 12 2 1 27 27 H 1.09000 * 109.47448 * 173.47414 * 15 13 12 28 28 H 1.09002 * 109.46891 * 293.48028 * 15 13 12 29 29 H 1.08995 * 109.46820 * 53.47124 * 15 13 12 30 30 H 1.08999 * 110.48396 * 20.44070 * 18 16 13 31 31 H 1.08994 * 110.49084 * 257.79627 * 18 16 13 32 32 H 1.09000 * 109.87687 * 242.60987 * 19 18 16 33 33 H 1.08992 * 110.00168 * 121.52843 * 19 18 16 34 34 H 1.08994 * 110.61906 * 158.55905 * 21 20 19 35 35 H 1.08999 * 110.61510 * 281.55777 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.8282 -2.5197 -4.0082 10 1 1.8269 -0.4198 -5.2204 11 1 3.8075 -1.1188 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 2.2242 0.2518 2.3059 14 1 2.2578 1.2685 1.9143 15 6 1.0701 0.1273 3.3027 16 6 3.5438 -0.0671 3.0113 17 1 4.3603 -0.1354 2.2924 18 6 3.8554 0.9856 4.1028 19 6 4.4055 0.1574 5.2802 20 8 4.4421 -1.2157 4.8566 21 6 3.4272 -1.3708 3.8413 22 1 -0.3633 -1.0241 0.0858 23 1 -0.3634 0.5863 0.8439 24 1 -0.3633 0.4377 -0.9299 25 1 0.7088 1.1614 -3.4844 26 1 1.3925 -1.4354 1.4693 27 1 1.2785 0.7416 4.1786 28 1 0.1463 0.4655 2.8331 29 1 0.9631 -0.9140 3.6063 30 1 2.9465 1.5103 4.3972 31 1 4.6068 1.6913 3.7488 32 1 3.7497 0.2611 6.1446 33 1 5.4104 0.4936 5.5351 34 1 3.6360 -2.2415 3.2198 35 1 2.4394 -1.4499 4.2951 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253081031.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:07 Heat of formation + Delta-G solvation = -52.576784 kcal Electronic energy + Delta-G solvation = -14860.042122 eV Core-core repulsion = 12471.730634 eV Total energy + Delta-G solvation = -2388.311488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.47779 -36.54989 -33.64009 -31.62438 -29.87675 -27.96204 -27.01556 -25.05130 -23.53754 -21.88389 -20.24550 -19.18670 -16.57274 -16.19254 -15.56205 -14.96331 -14.68836 -14.24910 -13.80430 -13.45345 -13.01968 -12.67562 -12.16194 -11.88384 -11.45322 -11.29534 -11.22181 -11.08039 -10.88574 -10.84960 -10.43416 -10.40235 -10.19237 -10.10713 -9.76432 -9.37048 -8.93103 -8.33878 -7.24878 -5.96944 -4.00381 3.35458 3.39188 3.42895 4.15764 4.44827 4.79287 4.98063 5.06634 5.23986 5.33832 5.41098 5.50459 5.55298 5.71361 5.82447 5.87841 5.89124 6.01821 6.18690 6.28986 6.37352 6.48228 6.61759 6.76166 6.86631 7.05966 7.09812 7.35468 7.75720 7.91295 8.30173 8.56533 8.62226 9.07097 9.65031 11.09550 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046429 B = 0.007103 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.923086 B = 3940.959028 C = 4219.331816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.031 0.969 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.680 5.680 13 C 0.093 3.907 14 H 0.070 0.930 15 C -0.180 4.180 16 C -0.103 4.103 17 H 0.090 0.910 18 C -0.157 4.157 19 C 0.049 3.951 20 O -0.387 6.387 21 C 0.050 3.950 22 H 0.026 0.974 23 H 0.006 0.994 24 H 0.090 0.910 25 H 0.260 0.740 26 H 0.326 0.674 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.090 0.095 12.154 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.105 3.895 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.309 5.309 13 C -0.018 4.018 14 H 0.088 0.912 15 C -0.239 4.239 16 C -0.123 4.123 17 H 0.109 0.891 18 C -0.196 4.196 19 C -0.028 4.028 20 O -0.306 6.306 21 C -0.026 4.026 22 H 0.045 0.955 23 H 0.025 0.975 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.143 0.857 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.813 0.064 11.867 12.196 hybrid contribution -0.867 0.038 -0.704 1.118 sum 1.946 0.103 11.163 11.332 Atomic orbital electron populations 1.22481 1.00637 0.98348 1.01365 1.19283 0.89678 0.93960 0.86605 0.95083 1.21177 1.30029 1.12406 0.89648 0.91982 1.24955 0.95393 0.95234 0.99037 1.69863 1.37386 1.23270 1.23411 0.86577 0.79184 0.79620 0.82087 1.20386 1.21500 1.20321 1.60769 1.53790 1.12072 1.04236 1.21450 0.91760 0.97220 0.91362 0.91207 1.22644 0.99737 1.01539 0.99948 1.22753 0.99732 0.93475 0.96342 0.89141 1.23069 1.01667 0.98990 0.95828 1.23072 1.00818 0.82453 0.96426 1.88823 1.57534 1.26670 1.57576 1.23766 0.91230 0.99162 0.88459 0.95513 0.97490 0.89177 0.93051 0.85650 0.92859 0.92456 0.92377 0.90639 0.90796 0.93091 0.90495 0.88724 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 9.07 37.16 0.34 -3.65 16 2 C 0.21 5.23 2.59 -68.87 -0.18 5.05 16 3 H 0.03 0.85 7.20 -51.93 -0.37 0.47 16 4 C -0.49 -13.61 8.84 -34.44 -0.30 -13.91 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.05 1.50 5.29 -17.82 -0.09 1.40 16 7 N -0.90 -25.69 11.29 55.43 0.63 -25.07 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.68 -13.83 6.06 -100.96 -0.61 -14.44 16 13 C 0.09 1.58 2.56 -67.71 -0.17 1.41 16 14 H 0.07 1.30 7.09 -51.93 -0.37 0.93 16 15 C -0.18 -2.59 8.24 37.16 0.31 -2.28 16 16 C -0.10 -1.58 3.17 -88.61 -0.28 -1.86 16 17 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 18 C -0.16 -1.98 6.37 -25.20 -0.16 -2.14 16 19 C 0.05 0.60 7.70 37.73 0.29 0.89 16 20 O -0.39 -5.89 11.52 -35.23 -0.41 -6.30 16 21 C 0.05 0.73 6.92 38.21 0.26 0.99 16 22 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 23 H 0.01 0.13 6.85 -51.93 -0.36 -0.22 16 24 H 0.09 2.39 5.96 -51.92 -0.31 2.08 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.33 6.31 7.71 -39.29 -0.30 6.01 16 27 H 0.05 0.67 6.32 -51.93 -0.33 0.34 16 28 H 0.06 0.87 6.85 -51.93 -0.36 0.52 16 29 H 0.06 0.78 6.23 -51.93 -0.32 0.46 16 30 H 0.08 0.88 6.21 -51.93 -0.32 0.56 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.06 0.84 5.54 -51.93 -0.29 0.55 16 LS Contribution 271.30 15.07 4.09 4.09 Total: -1.00 -28.41 271.30 -6.72 -35.13 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.40 Total: 4.16 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 0.01 Total: -14.11 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.01 Total: -39.51 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.41 Total: -6.30 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.41 -6.72 -35.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253081031.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.444 kcal (2) G-P(sol) polarization free energy of solvation -28.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds