Wall clock time and date at job start Mon Mar 30 2020 20:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.47181 * 2 1 4 4 C 1.42903 * 113.99981 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.52134 * 329.87774 * 4 3 2 6 6 C 1.53115 * 109.52103 * 90.00126 * 4 3 2 7 7 C 1.53045 * 109.27971 * 62.31382 * 6 4 3 8 8 N 1.46848 * 109.51848 * 59.17700 * 7 6 4 9 9 C 1.46906 * 110.99535 * 174.16200 * 8 7 6 10 10 C 1.46843 * 111.20173 * 298.25870 * 8 7 6 11 11 C 1.53033 * 109.52266 * 61.74361 * 10 8 7 12 12 H 1.09001 * 109.53969 * 60.78554 * 11 10 8 13 13 C 1.50703 * 109.50558 * 180.88181 * 11 10 8 14 14 H 1.07997 * 120.00341 * 119.80376 * 13 11 10 15 15 C 1.37881 * 119.99781 * 299.80652 * 13 11 10 16 16 N 1.31512 * 119.99851 * 179.97438 * 15 13 11 17 17 Si 1.86797 * 119.99901 * 359.97438 * 15 13 11 18 18 H 1.48499 * 109.47224 * 90.00467 * 17 15 13 19 19 H 1.48498 * 109.47116 * 210.00084 * 17 15 13 20 20 H 1.48498 * 109.47574 * 330.00152 * 17 15 13 21 21 H 1.09004 * 109.46957 * 59.99330 * 1 2 3 22 22 H 1.08989 * 109.47160 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46913 * 300.00072 * 1 2 3 24 24 H 1.09002 * 109.47263 * 240.00622 * 2 1 3 25 25 H 1.08997 * 109.47459 * 120.00253 * 2 1 3 26 26 H 1.08998 * 109.50305 * 302.37323 * 6 4 3 27 27 H 1.09000 * 109.50493 * 182.25731 * 6 4 3 28 28 H 1.09000 * 109.46198 * 299.16264 * 7 6 4 29 29 H 1.08992 * 109.45165 * 179.18562 * 7 6 4 30 30 H 1.08992 * 109.47459 * 56.04492 * 9 8 7 31 31 H 1.09004 * 109.47040 * 176.04643 * 9 8 7 32 32 H 1.09000 * 109.47033 * 296.04595 * 9 8 7 33 33 H 1.08999 * 109.46355 * 181.76034 * 10 8 7 34 34 H 1.09001 * 109.45931 * 301.72798 * 10 8 7 35 35 H 0.97006 * 119.99726 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8644 0.6030 0.5147 6 6 3.9404 1.5008 -1.4439 7 6 3.3767 2.7395 -2.1440 8 7 3.8002 3.9463 -1.4223 9 6 3.3939 5.1603 -2.1429 10 6 3.2829 3.9521 -0.0480 11 6 3.8437 2.7496 0.7146 12 1 4.9312 2.8146 0.7489 13 6 3.2956 2.7439 2.1184 14 1 2.7113 1.9050 2.4665 15 6 3.5402 3.8097 2.9583 16 7 3.0615 3.8049 4.1831 17 14 4.5515 5.2603 2.3563 18 1 3.6520 6.2703 1.7430 19 1 5.2725 5.8705 3.5020 20 1 5.5338 4.7934 1.3452 21 1 -0.3633 0.5140 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.6130 0.6045 -1.9708 27 1 5.0294 1.5464 -1.4443 28 1 2.2881 2.6864 -2.1555 29 1 3.7493 2.7790 -3.1676 30 1 2.3165 5.1424 -2.3063 31 1 3.6575 6.0382 -1.5531 32 1 3.9065 5.2010 -3.1040 33 1 3.5871 4.8724 0.4506 34 1 2.1947 3.8933 -0.0693 35 1 3.2339 4.5546 4.7741 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259479031.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:42 Heat of formation + Delta-G solvation = -43.364946 kcal Electronic energy + Delta-G solvation = -15464.016303 eV Core-core repulsion = 13076.104270 eV Total energy + Delta-G solvation = -2387.912033 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.91267 -36.36171 -33.26803 -31.96638 -30.29140 -29.96275 -25.92630 -24.78200 -22.64840 -22.05281 -21.04196 -18.84966 -16.65191 -15.78806 -15.54065 -15.09983 -14.38334 -14.03681 -13.85579 -13.52015 -13.11186 -12.69483 -12.39160 -12.01045 -11.92441 -11.53309 -11.30558 -11.22442 -10.97627 -10.95520 -10.47810 -10.15947 -10.03564 -9.76710 -9.34137 -8.96484 -8.56264 -8.46911 -7.67272 -6.00904 -3.98793 3.31715 3.43468 3.50120 4.40269 4.46073 4.63177 5.31927 5.39255 5.46952 5.49007 5.63001 5.66395 5.77798 5.79193 5.91980 6.02243 6.06106 6.17549 6.17881 6.23673 6.30440 6.35378 6.46017 6.55809 6.63940 6.73454 7.07979 7.32492 7.64431 7.70888 7.88550 8.10939 8.61137 9.05729 9.60790 11.12310 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023521 B = 0.014728 C = 0.010263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.143224 B = 1900.696084 C = 2727.615577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 O -0.363 6.363 4 C 0.106 3.894 5 H 0.053 0.947 6 C -0.140 4.140 7 C 0.068 3.932 8 N -0.551 5.551 9 C 0.026 3.974 10 C 0.058 3.942 11 C 0.023 3.977 12 H 0.045 0.955 13 C -0.499 4.499 14 H 0.077 0.923 15 C 0.068 3.932 16 N -0.902 5.902 17 Si 0.879 3.121 18 H -0.282 1.282 19 H -0.298 1.298 20 H -0.257 1.257 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.033 0.967 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.059 0.941 30 H 0.020 0.980 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.607 -3.671 -11.564 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.282 6.282 4 C 0.048 3.952 5 H 0.071 0.929 6 C -0.178 4.178 7 C -0.060 4.060 8 N -0.276 5.276 9 C -0.122 4.122 10 C -0.069 4.069 11 C 0.004 3.996 12 H 0.063 0.937 13 C -0.537 4.537 14 H 0.095 0.905 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.709 3.291 18 H -0.209 1.209 19 H -0.225 1.225 20 H -0.182 1.182 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.232 -3.417 -11.368 11.873 hybrid contribution -0.287 0.720 -0.275 0.822 sum -0.519 -2.697 -11.643 11.962 Atomic orbital electron populations 1.21693 0.94712 1.01177 1.02900 1.22347 0.94959 0.85761 0.98913 1.88002 1.21527 1.23993 1.94689 1.22088 0.80449 0.99747 0.92892 0.92879 1.22141 1.01217 0.96690 0.97757 1.21846 0.97899 0.90185 0.96120 1.62092 1.60416 1.01400 1.03646 1.22299 0.97879 0.93533 0.98528 1.22643 0.98029 1.00265 0.85933 1.19334 0.96767 0.88933 0.94561 0.93711 1.20917 1.33220 1.06012 0.93592 0.90520 1.25009 0.95407 0.98083 0.94785 1.69895 1.45773 1.31761 1.06602 0.86964 0.81223 0.83152 0.77754 1.20891 1.22527 1.18196 0.92574 0.92051 0.91653 0.94851 0.93816 0.92540 0.90827 0.94625 0.92248 0.96142 0.92084 0.92213 0.92625 0.94139 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.28 37.16 0.38 -1.76 16 2 C 0.06 0.96 6.47 37.16 0.24 1.20 16 3 O -0.36 -7.60 8.34 -35.23 -0.29 -7.89 16 4 C 0.11 2.19 2.35 -26.61 -0.06 2.13 16 5 H 0.05 1.07 7.79 -51.93 -0.40 0.67 16 6 C -0.14 -2.40 5.79 -26.65 -0.15 -2.56 16 7 C 0.07 1.17 5.33 -3.83 -0.02 1.15 16 8 N -0.55 -10.86 4.91 -242.96 -1.19 -12.06 16 9 C 0.03 0.44 9.62 60.07 0.58 1.01 16 10 C 0.06 1.34 4.09 -3.84 -0.02 1.33 16 11 C 0.02 0.56 1.69 -91.69 -0.15 0.41 16 12 H 0.05 1.12 7.19 -51.93 -0.37 0.74 16 13 C -0.50 -14.19 8.78 -34.44 -0.30 -14.49 16 14 H 0.08 2.38 7.88 -52.49 -0.41 1.96 16 15 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 16 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 17 Si 0.88 22.36 24.38 -169.99 -4.14 18.22 16 18 H -0.28 -7.04 6.87 56.52 0.39 -6.65 16 19 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 20 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.06 0.72 8.14 -51.94 -0.42 0.29 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.03 0.49 7.83 -51.93 -0.41 0.08 16 25 H 0.04 0.74 8.09 -51.93 -0.42 0.32 16 26 H 0.06 0.84 7.83 -51.93 -0.41 0.43 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.04 0.65 7.76 -51.93 -0.40 0.25 16 29 H 0.06 0.89 8.12 -51.93 -0.42 0.46 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 1.01 8.02 -51.93 -0.42 0.60 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.36 3.21 -51.93 -0.17 1.19 16 34 H 0.04 0.99 7.76 -51.93 -0.40 0.59 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 270.60 15.07 4.08 4.08 Total: -1.00 -30.95 270.60 -6.34 -37.29 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.95 Total: -2.80 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 0.39 Total: -9.69 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: -0.42 Total: -39.21 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.29 Total: -7.89 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.22 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.95 -6.34 -37.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259479031.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.077 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds