Wall clock time and date at job start Mon Mar 30 2020 20:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42906 * 109.46934 * 2 1 4 4 C 1.42892 * 113.99804 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.53924 * 30.09977 * 4 3 2 6 6 C 1.53035 * 109.50780 * 269.99759 * 4 3 2 7 7 N 1.46846 * 109.52744 * 180.88128 * 6 4 3 8 8 C 1.46898 * 111.00056 * 185.84176 * 7 6 4 9 9 C 1.46846 * 111.19780 * 61.74478 * 7 6 4 10 10 C 1.53032 * 109.52443 * 298.25976 * 9 7 6 11 11 C 1.53123 * 109.28121 * 59.17535 * 10 9 7 12 12 H 1.09001 * 109.51952 * 62.25288 * 11 10 9 13 13 C 1.50698 * 109.52550 * 182.38103 * 11 10 9 14 14 H 1.08002 * 120.00149 * 120.00391 * 13 11 10 15 15 C 1.37878 * 119.99673 * 299.99751 * 13 11 10 16 16 N 1.31523 * 119.99664 * 179.97438 * 15 13 11 17 17 Si 1.86801 * 120.00429 * 0.02562 * 15 13 11 18 18 H 1.48498 * 109.47275 * 89.99245 * 17 15 13 19 19 H 1.48494 * 109.47151 * 209.99687 * 17 15 13 20 20 H 1.48501 * 109.46591 * 329.99442 * 17 15 13 21 21 H 1.09006 * 109.46839 * 60.00273 * 1 2 3 22 22 H 1.09000 * 109.46911 * 180.02562 * 1 2 3 23 23 H 1.08989 * 109.47250 * 299.99946 * 1 2 3 24 24 H 1.09000 * 109.47610 * 240.00384 * 2 1 3 25 25 H 1.08993 * 109.47034 * 119.99513 * 2 1 3 26 26 H 1.09008 * 109.45841 * 60.86284 * 6 4 3 27 27 H 1.09003 * 109.46290 * 300.90268 * 6 4 3 28 28 H 1.09000 * 109.47421 * 59.99517 * 8 7 6 29 29 H 1.08998 * 109.47264 * 180.02562 * 8 7 6 30 30 H 1.09003 * 109.47040 * 300.00176 * 8 7 6 31 31 H 1.09009 * 109.46169 * 58.27021 * 9 7 6 32 32 H 1.08995 * 109.46611 * 178.23876 * 9 7 6 33 33 H 1.09001 * 109.50949 * 179.12117 * 10 9 7 34 34 H 1.09005 * 109.50313 * 299.19974 * 10 9 7 35 35 H 0.96998 * 119.99571 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8646 0.6030 -0.5142 6 6 3.9396 1.5008 1.4433 7 7 5.4017 1.6380 1.4445 8 6 5.9384 1.5414 2.8084 9 6 5.8179 2.8914 0.8027 10 6 5.3652 2.8925 -0.6592 11 6 3.8418 2.7490 -0.7168 12 1 3.3767 3.6036 -0.2255 13 6 3.3955 2.6906 -2.1550 14 1 2.8665 1.8232 -2.5215 15 6 3.6623 3.7446 -3.0029 16 7 3.2732 3.6934 -4.2582 17 14 4.5777 5.2446 -2.3693 18 1 6.0378 5.0487 -2.5555 19 1 4.1394 6.4468 -3.1227 20 1 4.2833 5.4307 -0.9256 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 3.6609 0.5783 1.9528 27 1 3.4947 2.3503 1.9616 28 1 5.6779 0.5721 3.2337 29 1 7.0229 1.6467 2.7805 30 1 5.5125 2.3342 3.4235 31 1 5.3641 3.7345 1.3239 32 1 6.9034 2.9791 0.8468 33 1 5.6606 3.8296 -1.1311 34 1 5.8299 2.0581 -1.1846 35 1 3.4613 4.4348 -4.8548 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259801180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:15 Heat of formation + Delta-G solvation = -44.106357 kcal Electronic energy + Delta-G solvation = -15233.197841 eV Core-core repulsion = 12845.253659 eV Total energy + Delta-G solvation = -2387.944183 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.90014 -36.58255 -33.80578 -31.59526 -30.86626 -28.84340 -27.25042 -23.98743 -22.82172 -21.90036 -21.23514 -19.01687 -16.73018 -16.28460 -15.30688 -15.15273 -14.38968 -14.29007 -13.94268 -13.51574 -13.06996 -12.63519 -12.36227 -12.15498 -12.00255 -11.81143 -11.50045 -11.43136 -10.89373 -10.81550 -10.53128 -10.26452 -10.01747 -9.65054 -9.36967 -8.94834 -8.60679 -8.46996 -8.00065 -5.99113 -3.95703 3.29283 3.40712 3.42544 4.06571 4.46576 4.62898 5.31015 5.32355 5.41740 5.46533 5.53229 5.62671 5.68485 5.78771 5.85700 5.89955 5.94214 5.98142 6.06501 6.12609 6.31409 6.32388 6.42728 6.51157 6.73725 6.81680 7.01237 7.30930 7.37691 7.52696 7.81464 8.13461 8.61246 9.06825 9.62909 11.14661 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021053 B = 0.014465 C = 0.009099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.669247 B = 1935.176354 C = 3076.444446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.367 6.367 4 C 0.114 3.886 5 H 0.062 0.938 6 C 0.035 3.965 7 N -0.538 5.538 8 C 0.027 3.973 9 C 0.051 3.949 10 C -0.117 4.117 11 C 0.017 3.983 12 H 0.030 0.970 13 C -0.495 4.495 14 H 0.075 0.925 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.883 3.117 18 H -0.279 1.279 19 H -0.298 1.298 20 H -0.267 1.267 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.020 0.980 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.956 -4.770 11.775 12.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.285 6.285 4 C 0.056 3.944 5 H 0.080 0.920 6 C -0.094 4.094 7 N -0.264 5.264 8 C -0.121 4.121 9 C -0.076 4.076 10 C -0.155 4.155 11 C -0.002 4.002 12 H 0.048 0.952 13 C -0.533 4.533 14 H 0.093 0.907 15 C -0.133 4.133 16 N -0.542 5.542 17 Si 0.714 3.286 18 H -0.206 1.206 19 H -0.225 1.225 20 H -0.193 1.193 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.999 -4.900 11.323 12.498 hybrid contribution 0.382 1.309 0.759 1.560 sum 2.381 -3.591 12.082 12.827 Atomic orbital electron populations 1.21707 0.94593 1.01276 1.02987 1.22377 0.94997 0.85438 0.99148 1.87984 1.21380 1.24457 1.94638 1.21987 0.79881 1.00541 0.92031 0.91991 1.22653 0.87054 1.00191 0.99467 1.61836 1.10551 1.36365 1.17623 1.22328 1.00048 1.00514 0.89219 1.22256 0.99345 0.89170 0.96854 1.22017 0.99117 1.01476 0.92849 1.19266 0.90847 0.92798 0.97271 0.95188 1.20900 1.35932 1.04798 0.91686 0.90702 1.24990 0.95650 0.97956 0.94744 1.69898 1.47467 1.32209 1.04645 0.86913 0.79779 0.82809 0.79108 1.20577 1.22517 1.19260 0.91582 0.91956 0.92469 0.93585 0.94723 0.91802 0.94673 0.91788 0.91643 0.96136 0.95414 0.91554 0.92624 0.90971 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 37.16 0.38 -1.77 16 2 C 0.06 0.98 6.47 37.16 0.24 1.22 16 3 O -0.37 -7.86 9.69 -35.23 -0.34 -8.20 16 4 C 0.11 2.41 2.13 -26.65 -0.06 2.36 16 5 H 0.06 1.34 7.79 -51.93 -0.40 0.94 16 6 C 0.03 0.62 5.08 -3.84 -0.02 0.60 16 7 N -0.54 -9.21 4.91 -242.96 -1.19 -10.40 16 8 C 0.03 0.36 9.59 60.06 0.58 0.94 16 9 C 0.05 0.93 5.46 -3.84 -0.02 0.91 16 10 C -0.12 -2.56 4.83 -26.65 -0.13 -2.68 16 11 C 0.02 0.42 1.48 -91.64 -0.14 0.28 16 12 H 0.03 0.77 7.21 -51.93 -0.37 0.40 16 13 C -0.50 -14.20 8.87 -34.44 -0.31 -14.50 16 14 H 0.07 2.34 7.99 -52.49 -0.42 1.92 16 15 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 16 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 17 Si 0.88 22.24 24.35 -169.99 -4.14 18.11 16 18 H -0.28 -6.74 6.89 56.52 0.39 -6.35 16 19 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 20 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 21 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 25 H 0.03 0.51 7.89 -51.93 -0.41 0.10 16 26 H 0.06 1.02 7.87 -51.92 -0.41 0.61 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 32 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.06 1.27 3.34 -51.93 -0.17 1.10 16 34 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 272.88 15.07 4.11 4.11 Total: -1.00 -31.03 272.88 -6.37 -37.40 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -6.01 Total: -2.93 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 0.43 Total: -10.77 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.42 Total: -37.71 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.34 Total: -8.20 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.03 -6.37 -37.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259801180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.711 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds