Wall clock time and date at job start Mon Mar 30 2020 20:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42906 * 109.46934 * 2 1 4 4 C 1.42892 * 113.99804 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.53924 * 30.09977 * 4 3 2 6 6 C 1.53035 * 109.50780 * 269.99759 * 4 3 2 7 7 N 1.46846 * 109.52744 * 180.88128 * 6 4 3 8 8 C 1.46898 * 111.00056 * 185.84176 * 7 6 4 9 9 C 1.46846 * 111.19780 * 61.74478 * 7 6 4 10 10 C 1.53032 * 109.52443 * 298.25976 * 9 7 6 11 11 C 1.53123 * 109.28121 * 59.17535 * 10 9 7 12 12 H 1.09001 * 109.51952 * 62.25288 * 11 10 9 13 13 C 1.50698 * 109.52550 * 182.38103 * 11 10 9 14 14 H 1.08002 * 120.00149 * 120.00391 * 13 11 10 15 15 C 1.37878 * 119.99673 * 299.99751 * 13 11 10 16 16 N 1.31523 * 119.99664 * 179.97438 * 15 13 11 17 17 Si 1.86801 * 120.00429 * 0.02562 * 15 13 11 18 18 H 1.48498 * 109.47275 * 89.99245 * 17 15 13 19 19 H 1.48494 * 109.47151 * 209.99687 * 17 15 13 20 20 H 1.48501 * 109.46591 * 329.99442 * 17 15 13 21 21 H 1.09006 * 109.46839 * 60.00273 * 1 2 3 22 22 H 1.09000 * 109.46911 * 180.02562 * 1 2 3 23 23 H 1.08989 * 109.47250 * 299.99946 * 1 2 3 24 24 H 1.09000 * 109.47610 * 240.00384 * 2 1 3 25 25 H 1.08993 * 109.47034 * 119.99513 * 2 1 3 26 26 H 1.09008 * 109.45841 * 60.86284 * 6 4 3 27 27 H 1.09003 * 109.46290 * 300.90268 * 6 4 3 28 28 H 1.09000 * 109.47421 * 59.99517 * 8 7 6 29 29 H 1.08998 * 109.47264 * 180.02562 * 8 7 6 30 30 H 1.09003 * 109.47040 * 300.00176 * 8 7 6 31 31 H 1.09009 * 109.46169 * 58.27021 * 9 7 6 32 32 H 1.08995 * 109.46611 * 178.23876 * 9 7 6 33 33 H 1.09001 * 109.50949 * 179.12117 * 10 9 7 34 34 H 1.09005 * 109.50313 * 299.19974 * 10 9 7 35 35 H 0.96998 * 119.99571 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8646 0.6030 -0.5142 6 6 3.9396 1.5008 1.4433 7 7 5.4017 1.6380 1.4445 8 6 5.9384 1.5414 2.8084 9 6 5.8179 2.8914 0.8027 10 6 5.3652 2.8925 -0.6592 11 6 3.8418 2.7490 -0.7168 12 1 3.3767 3.6036 -0.2255 13 6 3.3955 2.6906 -2.1550 14 1 2.8665 1.8232 -2.5215 15 6 3.6623 3.7446 -3.0029 16 7 3.2732 3.6934 -4.2582 17 14 4.5777 5.2446 -2.3693 18 1 6.0378 5.0487 -2.5555 19 1 4.1394 6.4468 -3.1227 20 1 4.2833 5.4307 -0.9256 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 3.6609 0.5783 1.9528 27 1 3.4947 2.3503 1.9616 28 1 5.6779 0.5721 3.2337 29 1 7.0229 1.6467 2.7805 30 1 5.5125 2.3342 3.4235 31 1 5.3641 3.7345 1.3239 32 1 6.9034 2.9791 0.8468 33 1 5.6606 3.8296 -1.1311 34 1 5.8299 2.0581 -1.1846 35 1 3.4613 4.4348 -4.8548 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259801180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:14 Heat of formation + Delta-G solvation = -67.165712 kcal Electronic energy + Delta-G solvation = -15234.197770 eV Core-core repulsion = 12845.253659 eV Total energy + Delta-G solvation = -2388.944112 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.45012 -38.04993 -35.65253 -33.54905 -32.30178 -30.32082 -28.86195 -25.65860 -24.29407 -23.34885 -22.87033 -20.69553 -18.86986 -17.87558 -16.88919 -16.70889 -15.92147 -15.68015 -15.47855 -15.13711 -14.86357 -14.37027 -13.82921 -13.59669 -13.32928 -13.14864 -13.06376 -12.72341 -12.59245 -12.43332 -12.10413 -12.01054 -11.74129 -11.52439 -11.09062 -11.02018 -10.69320 -10.19324 -9.30201 -8.27138 -6.28889 1.27828 1.34932 1.44849 2.33167 2.68048 3.06539 3.28065 3.89893 4.01393 4.16952 4.20504 4.25978 4.40466 4.41632 4.50672 4.56528 4.62980 4.65206 4.77773 4.81011 4.88758 4.99925 5.02896 5.06637 5.12687 5.23680 5.29395 5.58535 5.68303 5.99846 6.17388 6.31785 6.57529 6.76180 7.33569 8.90384 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021053 B = 0.014465 C = 0.009099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.669247 B = 1935.176354 C = 3076.444446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.398 6.398 4 C 0.115 3.885 5 H 0.048 0.952 6 C 0.047 3.953 7 N -0.549 5.549 8 C 0.027 3.973 9 C 0.057 3.943 10 C -0.115 4.115 11 C 0.015 3.985 12 H 0.015 0.985 13 C -0.500 4.500 14 H 0.028 0.972 15 C 0.007 3.993 16 N -0.952 5.952 17 Si 0.949 3.051 18 H -0.258 1.258 19 H -0.299 1.299 20 H -0.252 1.252 21 H 0.042 0.958 22 H 0.096 0.904 23 H 0.065 0.935 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.031 0.969 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.027 0.973 31 H 0.030 0.970 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 -4.767 14.604 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 O -0.317 6.317 4 C 0.057 3.943 5 H 0.066 0.934 6 C -0.082 4.082 7 N -0.275 5.275 8 C -0.120 4.120 9 C -0.070 4.070 10 C -0.152 4.152 11 C -0.004 4.004 12 H 0.034 0.966 13 C -0.538 4.538 14 H 0.046 0.954 15 C -0.189 4.189 16 N -0.593 5.593 17 Si 0.776 3.224 18 H -0.183 1.183 19 H -0.227 1.227 20 H -0.176 1.176 21 H 0.062 0.938 22 H 0.114 0.886 23 H 0.084 0.916 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.050 0.950 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.385 -4.921 14.182 15.388 hybrid contribution -0.136 1.183 -0.169 1.203 sum 3.249 -3.738 14.013 14.862 Atomic orbital electron populations 1.21726 0.92733 1.03310 1.02285 1.22648 0.96569 0.83621 0.99856 1.87930 1.21496 1.27297 1.94936 1.21863 0.80141 0.98147 0.94161 0.93388 1.22474 0.87813 1.01288 0.96577 1.61823 1.09759 1.35682 1.20276 1.22437 1.01005 1.01751 0.86832 1.22166 1.01045 0.89912 0.93906 1.21869 0.96761 1.00610 0.96005 1.19238 0.92768 0.94087 0.94321 0.96648 1.21142 1.35122 1.03210 0.94370 0.95376 1.25886 0.96750 1.01462 0.94763 1.70060 1.49463 1.33548 1.06267 0.85843 0.79337 0.78150 0.79089 1.18350 1.22691 1.17650 0.93841 0.88555 0.91554 0.94962 0.91780 0.89348 0.95030 0.90121 0.89859 0.95422 0.95203 0.88621 0.93458 0.91867 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 10.28 71.98 0.74 -3.29 16 2 C 0.05 1.66 6.47 71.98 0.47 2.13 16 3 O -0.40 -17.25 9.69 -148.98 -1.44 -18.70 16 4 C 0.11 4.87 2.13 30.65 0.07 4.94 16 5 H 0.05 2.12 7.79 -2.39 -0.02 2.10 16 6 C 0.05 1.57 5.08 86.33 0.44 2.01 16 7 N -0.55 -16.94 4.91 -922.59 -4.53 -21.47 16 8 C 0.03 0.59 9.59 127.69 1.22 1.82 16 9 C 0.06 1.90 5.46 86.32 0.47 2.37 16 10 C -0.11 -4.87 4.83 30.65 0.15 -4.72 16 11 C 0.01 0.73 1.48 -11.46 -0.02 0.71 16 12 H 0.02 0.80 7.21 -2.39 -0.02 0.78 16 13 C -0.50 -29.91 8.87 25.60 0.23 -29.68 16 14 H 0.03 1.88 7.99 -2.91 -0.02 1.85 16 15 C 0.01 0.45 5.45 84.65 0.46 0.91 16 16 N -0.95 -61.51 13.96 21.45 0.30 -61.21 16 17 Si 0.95 46.19 24.35 68.60 1.67 47.86 16 18 H -0.26 -11.62 6.89 99.48 0.69 -10.94 16 19 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 20 H -0.25 -11.55 6.53 99.48 0.65 -10.90 16 21 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 22 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.03 1.15 8.09 -2.39 -0.02 1.13 16 25 H 0.06 1.76 7.89 -2.39 -0.02 1.75 16 26 H 0.09 2.52 7.87 -2.38 -0.02 2.50 16 27 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 30 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.10 2.63 8.08 -2.39 -0.02 2.61 16 33 H 0.05 2.06 3.34 -2.39 -0.01 2.06 16 34 H 0.06 2.75 8.14 -2.38 -0.02 2.73 16 35 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -69.77 272.88 1.17 -68.59 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.95 Total: 7.73 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 4.23 Total: -22.81 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -4.23 Total: -82.67 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -1.44 Total: -18.70 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.67 Total: 47.86 kcal Total: -69.77 1.17 -68.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259801180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.425 kcal (2) G-P(sol) polarization free energy of solvation -69.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds