Wall clock time and date at job start Mon Mar 30 2020 20:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.49852 * 30.07792 * 4 3 2 6 6 C 1.53039 * 109.50221 * 269.99757 * 4 3 2 7 7 N 1.46840 * 109.52273 * 299.23774 * 6 4 3 8 8 C 1.46906 * 111.00098 * 174.16028 * 7 6 4 9 9 C 1.46842 * 111.19969 * 298.25816 * 7 6 4 10 10 C 1.53033 * 109.52674 * 61.74261 * 9 7 6 11 11 C 1.53116 * 109.50394 * 150.19586 * 4 3 2 12 12 H 1.08996 * 109.52467 * 182.19758 * 11 4 3 13 13 C 1.50704 * 109.52213 * 302.38150 * 11 4 3 14 14 H 1.08003 * 120.00202 * 359.97438 * 13 11 4 15 15 C 1.37875 * 120.00023 * 180.02562 * 13 11 4 16 16 N 1.31521 * 120.00103 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00171 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47196 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47395 * 119.99784 * 17 15 13 20 20 H 1.48504 * 109.46888 * 239.99933 * 17 15 13 21 21 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 22 22 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 23 23 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 25 25 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 26 26 H 1.09003 * 109.45978 * 59.25103 * 6 4 3 27 27 H 1.08995 * 109.45986 * 179.23283 * 6 4 3 28 28 H 1.08997 * 109.46598 * 59.99580 * 8 7 6 29 29 H 1.08994 * 109.47375 * 179.97438 * 8 7 6 30 30 H 1.08994 * 109.46767 * 300.00115 * 8 7 6 31 31 H 1.09004 * 109.46298 * 181.76077 * 9 7 6 32 32 H 1.09003 * 109.46556 * 301.73584 * 9 7 6 33 33 H 1.09008 * 109.50082 * 60.76012 * 10 9 7 34 34 H 1.08999 * 109.50767 * 180.87852 * 10 9 7 35 35 H 0.97001 * 119.99685 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8636 0.6025 -0.5158 6 6 3.9408 1.5003 1.4418 7 7 3.3739 2.6667 2.1304 8 6 3.7307 2.6616 3.5554 9 6 3.7931 3.9185 1.4874 10 6 3.2788 3.9506 0.0464 11 6 3.8413 2.7490 -0.7179 12 1 4.9287 2.8161 -0.7529 13 6 3.2907 2.7419 -2.1208 14 1 2.7066 1.9022 -2.4674 15 6 3.5335 3.8068 -2.9621 16 7 4.2453 4.8292 -2.5403 17 14 2.8504 3.7983 -4.7007 18 1 2.0896 2.5434 -4.9275 19 1 1.9491 4.9641 -4.8842 20 1 3.9700 3.8804 -5.6728 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3635 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.6379 0.5902 1.9596 27 1 5.0284 1.5726 1.4406 28 1 4.8154 2.6881 3.6584 29 1 3.2985 3.5364 4.0413 30 1 3.3432 1.7569 4.0237 31 1 3.3829 4.7649 2.0384 32 1 4.8814 3.9793 1.4858 33 1 2.1897 3.9037 0.0476 34 1 3.6034 4.8729 -0.4354 35 1 4.4158 5.5786 -3.1321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259801183.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:20 Heat of formation + Delta-G solvation = -68.851172 kcal Electronic energy + Delta-G solvation = -15342.569430 eV Core-core repulsion = 12953.552231 eV Total energy + Delta-G solvation = -2389.017199 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.28734 -37.62261 -35.57972 -33.08958 -31.85725 -30.36080 -28.55162 -25.82310 -23.84394 -23.43621 -22.90548 -20.36970 -18.44497 -17.16091 -16.88156 -16.54738 -16.08709 -15.60382 -15.30677 -14.79912 -14.48959 -13.97957 -13.76776 -13.36506 -12.94662 -12.89620 -12.88606 -12.78521 -12.52921 -12.50449 -12.10855 -11.91541 -11.86122 -11.47503 -10.91510 -10.64086 -10.42787 -10.00751 -9.08480 -8.04885 -6.14912 1.39726 1.42046 1.53237 2.45935 2.97917 3.22226 3.32799 4.04687 4.17742 4.28694 4.40801 4.43478 4.46740 4.58995 4.63467 4.65135 4.74843 4.77467 4.90798 4.96974 5.01725 5.06887 5.16796 5.23603 5.35947 5.53683 5.61661 5.91710 6.02788 6.29297 6.33957 6.42341 6.80739 6.92425 7.50313 9.00311 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.026449 B = 0.012013 C = 0.008948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.398170 B = 2330.296743 C = 3128.534789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 O -0.373 6.373 4 C 0.106 3.894 5 H 0.047 0.953 6 C 0.044 3.956 7 N -0.543 5.543 8 C 0.027 3.973 9 C 0.066 3.934 10 C -0.089 4.089 11 C 0.046 3.954 12 H 0.004 0.996 13 C -0.509 4.509 14 H 0.047 0.953 15 C 0.010 3.990 16 N -0.920 5.920 17 Si 0.951 3.049 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.280 1.280 21 H 0.058 0.942 22 H 0.045 0.955 23 H 0.092 0.908 24 H 0.035 0.965 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.033 0.967 28 H 0.023 0.977 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.017 0.983 33 H 0.029 0.971 34 H 0.061 0.939 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.452 -7.290 8.582 11.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 O -0.292 6.292 4 C 0.048 3.952 5 H 0.065 0.935 6 C -0.085 4.085 7 N -0.268 5.268 8 C -0.121 4.121 9 C -0.062 4.062 10 C -0.127 4.127 11 C 0.028 3.972 12 H 0.022 0.978 13 C -0.548 4.548 14 H 0.065 0.935 15 C -0.187 4.187 16 N -0.560 5.560 17 Si 0.777 3.223 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.206 1.206 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.110 0.890 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.035 0.965 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.021 -7.000 8.491 11.412 hybrid contribution 0.929 0.171 -1.080 1.435 sum -2.092 -6.829 7.411 10.292 Atomic orbital electron populations 1.21670 0.93109 1.02849 1.02101 1.22593 0.96389 0.84617 0.99315 1.88043 1.20714 1.25716 1.94750 1.22128 0.81418 0.98289 0.93410 0.93493 1.22548 0.96236 0.94138 0.95553 1.61821 1.59999 1.01964 1.02976 1.22414 0.98494 1.03360 0.87798 1.22084 0.96365 0.91700 0.96023 1.21305 0.98277 1.00866 0.92292 1.18770 0.93842 0.91112 0.93485 0.97780 1.21356 1.31973 1.03722 0.97723 0.93518 1.25675 0.95689 0.95413 1.01967 1.70013 1.40716 1.08405 1.36881 0.85616 0.78167 0.77912 0.80613 1.19511 1.20852 1.20555 0.92286 0.93556 0.88957 0.94685 0.92919 0.89696 0.94843 0.95797 0.90826 0.90345 0.91010 0.96519 0.95193 0.92099 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 10.28 71.98 0.74 -3.19 16 2 C 0.05 1.58 6.47 71.98 0.47 2.04 16 3 O -0.37 -16.16 8.80 -148.98 -1.31 -17.47 16 4 C 0.11 4.56 2.36 30.65 0.07 4.63 16 5 H 0.05 1.97 7.79 -2.39 -0.02 1.95 16 6 C 0.04 1.57 5.12 86.33 0.44 2.01 16 7 N -0.54 -19.78 4.79 -922.62 -4.42 -24.20 16 8 C 0.03 0.74 9.59 127.69 1.22 1.96 16 9 C 0.07 2.69 5.46 86.33 0.47 3.17 16 10 C -0.09 -4.48 4.97 30.65 0.15 -4.33 16 11 C 0.05 2.41 2.00 -11.46 -0.02 2.39 16 12 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 13 C -0.51 -29.06 8.20 25.60 0.21 -28.85 16 14 H 0.05 2.69 7.64 -2.91 -0.02 2.67 16 15 C 0.01 0.58 5.31 84.65 0.45 1.03 16 16 N -0.92 -54.14 11.37 21.45 0.24 -53.90 16 17 Si 0.95 45.16 29.54 68.60 2.03 47.19 16 18 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.03 1.16 8.09 -2.39 -0.02 1.14 16 25 H 0.05 1.51 7.86 -2.39 -0.02 1.49 16 26 H 0.08 2.60 7.84 -2.39 -0.02 2.58 16 27 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 1.83 8.09 -2.39 -0.02 1.81 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 2.67 8.09 -2.38 -0.02 2.65 16 32 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.03 1.60 7.80 -2.38 -0.02 1.58 16 34 H 0.06 3.40 6.17 -2.39 -0.01 3.39 16 35 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -63.50 278.39 1.77 -61.73 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 1.03 Total: 5.79 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 4.20 Total: -19.14 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -4.18 Total: -78.10 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -1.31 Total: -17.47 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -63.50 1.77 -61.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259801183.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.118 kcal (2) G-P(sol) polarization free energy of solvation -63.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds