Wall clock time and date at job start Mon Mar 30 2020 20:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.44268 * 111.00390 * 2 1 4 4 C 1.54069 * 111.98116 * 219.31185 * 3 2 1 5 5 C 1.54285 * 112.28952 * 318.91279 * 4 3 2 6 6 C 1.50516 * 112.97161 * 318.30061 * 5 4 3 7 7 C 1.54508 * 108.82784 * 92.24257 * 6 5 4 8 8 C 1.45863 * 111.53286 * 282.70803 * 7 6 5 9 9 H 1.09000 * 108.79023 * 300.47375 * 8 7 6 10 10 C 1.52996 * 108.79448 * 182.24884 * 8 7 6 11 11 O 1.42898 * 109.47593 * 174.99779 * 10 8 7 12 12 C 1.34926 * 117.00310 * 180.02562 * 11 10 8 13 13 H 1.07997 * 120.00002 * 359.97438 * 12 11 10 14 14 C 1.38632 * 119.99933 * 180.02562 * 12 11 10 15 15 N 1.31582 * 120.00349 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99896 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47060 * 90.00118 * 16 14 12 18 18 H 1.48502 * 109.47128 * 209.99987 * 16 14 12 19 19 H 1.48494 * 109.47110 * 330.00168 * 16 14 12 20 20 H 1.09000 * 109.46859 * 298.01667 * 1 2 3 21 21 H 1.08993 * 109.47069 * 58.01024 * 1 2 3 22 22 H 1.08999 * 109.47103 * 178.02184 * 1 2 3 23 23 H 1.09002 * 108.97553 * 339.95802 * 3 2 1 24 24 H 1.08998 * 108.97834 * 98.66770 * 3 2 1 25 25 H 1.09000 * 108.91658 * 79.63715 * 4 3 2 26 26 H 1.09005 * 108.91590 * 198.28199 * 4 3 2 27 27 H 1.09007 * 108.76846 * 79.21533 * 5 4 3 28 28 H 1.08995 * 108.77106 * 197.37951 * 5 4 3 29 29 H 1.08998 * 109.64047 * 332.40584 * 6 5 4 30 30 H 1.09001 * 109.52742 * 212.01366 * 6 5 4 31 31 H 1.09002 * 109.05647 * 162.19914 * 7 6 5 32 32 H 1.09004 * 109.05690 * 43.21441 * 7 6 5 33 33 H 1.09001 * 109.46960 * 295.00011 * 10 8 7 34 34 H 1.09005 * 109.47306 * 54.99415 * 10 8 7 35 35 H 0.96999 * 120.00132 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9861 1.3468 0.0000 4 6 3.2247 1.4890 -0.9051 5 6 4.1834 0.2868 -0.7782 6 6 4.3614 -0.1750 0.6433 7 6 3.3282 -1.2849 0.9401 8 6 1.9987 -0.7309 1.1704 9 1 2.0448 -0.0486 2.0191 10 6 1.0409 -1.8739 1.5124 11 8 -0.2385 -1.3372 1.8547 12 6 -1.2044 -2.2194 2.1852 13 1 -0.9924 -3.2784 2.1824 14 6 -2.4692 -1.7665 2.5273 15 7 -2.7276 -0.4763 2.5302 16 14 -3.8067 -2.9880 2.9842 17 1 -3.7711 -3.2365 4.4478 18 1 -5.1323 -2.4341 2.6083 19 1 -3.5800 -4.2642 2.2597 20 1 -0.3633 0.4827 0.9072 21 1 -0.3633 0.5444 -0.8716 22 1 -0.3633 -1.0270 -0.0355 23 1 1.2091 2.0248 -0.3533 24 1 2.2582 1.6221 1.0190 25 1 2.8974 1.5721 -1.9415 26 1 3.7609 2.3974 -0.6303 27 1 3.7894 -0.5399 -1.3694 28 1 5.1562 0.5699 -1.1801 29 1 4.2034 0.6622 1.3230 30 1 5.3690 -0.5694 0.7748 31 1 3.6426 -1.8360 1.8264 32 1 3.2869 -1.9687 0.0922 33 1 0.9396 -2.5333 0.6504 34 1 1.4359 -2.4385 2.3571 35 1 -3.6127 -0.1595 2.7692 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259904542.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:29 Heat of formation + Delta-G solvation = -27.105345 kcal Electronic energy + Delta-G solvation = -15268.465411 eV Core-core repulsion = 12881.258447 eV Total energy + Delta-G solvation = -2387.206964 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.21827 -36.14923 -33.72681 -32.71639 -31.39136 -27.65127 -26.28669 -24.21101 -23.58549 -22.19340 -19.84934 -19.10149 -17.41394 -15.99527 -15.36902 -15.05845 -14.36792 -14.08611 -13.57129 -13.35524 -12.99622 -12.84156 -12.43355 -11.94539 -11.61823 -11.31186 -11.12096 -10.94065 -10.68330 -10.55608 -10.37434 -10.29398 -10.11541 -10.03169 -9.74840 -9.37768 -8.99655 -7.90036 -7.50984 -5.95111 -3.57050 3.31248 3.34815 3.38013 4.31563 4.54218 4.96717 5.16016 5.31122 5.38048 5.45148 5.56880 5.61626 5.84362 5.90412 5.97308 6.05632 6.15293 6.24371 6.32496 6.38400 6.47815 6.50597 6.52758 6.57866 6.64458 6.73242 6.87287 7.07767 7.46416 7.53538 7.87459 7.95870 8.44886 9.49619 10.15689 11.25541 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060009 B = 0.007766 C = 0.007169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.485153 B = 3604.389110 C = 3904.978578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.528 5.528 3 C 0.054 3.946 4 C -0.107 4.107 5 C -0.107 4.107 6 C -0.113 4.113 7 C -0.106 4.106 8 C 0.088 3.912 9 H 0.042 0.958 10 C 0.066 3.934 11 O -0.287 6.287 12 C -0.363 4.363 13 H 0.060 0.940 14 C 0.026 3.974 15 N -0.888 5.888 16 Si 0.921 3.079 17 H -0.282 1.282 18 H -0.284 1.284 19 H -0.276 1.276 20 H 0.058 0.942 21 H 0.031 0.969 22 H 0.092 0.908 23 H 0.058 0.942 24 H 0.034 0.966 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.031 0.969 34 H 0.025 0.975 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.084 1.396 -4.700 12.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.253 5.253 3 C -0.076 4.076 4 C -0.146 4.146 5 C -0.145 4.145 6 C -0.150 4.150 7 C -0.144 4.144 8 C -0.020 4.020 9 H 0.060 0.940 10 C -0.012 4.012 11 O -0.203 6.203 12 C -0.442 4.442 13 H 0.078 0.922 14 C -0.173 4.173 15 N -0.531 5.531 16 Si 0.749 3.251 17 H -0.209 1.209 18 H -0.210 1.210 19 H -0.201 1.201 20 H 0.077 0.923 21 H 0.050 0.950 22 H 0.110 0.890 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.053 1.455 -5.109 12.264 hybrid contribution -0.950 -0.432 1.040 1.473 sum 10.103 1.023 -4.069 10.940 Atomic orbital electron populations 1.22720 0.84091 1.04465 0.99474 1.61762 1.10051 1.13092 1.40396 1.21880 0.96384 0.91076 0.98247 1.21939 0.95667 0.97129 0.99833 1.21180 0.97681 0.98770 0.96861 1.21312 0.98025 0.98420 0.97282 1.20550 0.94062 0.98057 1.01767 1.20519 0.93837 0.96134 0.91483 0.93958 1.22321 0.87424 0.94196 0.97287 1.85980 1.15937 1.32135 1.86220 1.20811 0.90416 0.88275 1.44748 0.92228 1.24877 0.97044 0.96291 0.99055 1.69994 1.21185 1.12036 1.49915 0.86020 0.80771 0.79821 0.78482 1.20889 1.20982 1.20136 0.92337 0.94989 0.88999 0.92336 0.94749 0.92455 0.92993 0.91533 0.93608 0.92298 0.92498 0.92078 0.91410 0.95096 0.95708 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 7.68 60.06 0.46 1.33 16 2 N -0.53 -10.08 4.44 -239.74 -1.07 -11.15 16 3 C 0.05 0.89 5.17 -4.67 -0.02 0.87 16 4 C -0.11 -1.45 6.14 -25.50 -0.16 -1.61 16 5 C -0.11 -1.39 5.42 -27.30 -0.15 -1.54 16 6 C -0.11 -1.48 5.60 -27.18 -0.15 -1.63 16 7 C -0.11 -1.63 4.70 -29.32 -0.14 -1.76 16 8 C 0.09 1.68 2.04 -70.59 -0.14 1.53 16 9 H 0.04 0.87 7.24 -51.93 -0.38 0.49 16 10 C 0.07 1.45 4.71 37.16 0.18 1.63 16 11 O -0.29 -7.86 5.41 -16.50 -0.09 -7.95 16 12 C -0.36 -10.46 9.81 30.88 0.30 -10.16 16 13 H 0.06 1.65 7.77 -52.49 -0.41 1.24 16 14 C 0.03 0.74 5.49 -17.51 -0.10 0.64 16 15 N -0.89 -27.04 13.67 55.48 0.76 -26.28 16 16 Si 0.92 21.99 29.55 -169.99 -5.02 16.97 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H 0.06 1.52 6.99 -51.93 -0.36 1.16 16 21 H 0.03 0.65 8.01 -51.93 -0.42 0.24 16 22 H 0.09 2.29 5.59 -51.93 -0.29 2.00 16 23 H 0.06 0.97 7.49 -51.93 -0.39 0.58 16 24 H 0.03 0.59 6.51 -51.93 -0.34 0.25 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.93 7.38 -51.92 -0.38 0.55 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.80 7.15 -51.93 -0.37 0.43 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.07 1.04 7.58 -51.93 -0.39 0.64 16 33 H 0.03 0.69 7.89 -51.93 -0.41 0.28 16 34 H 0.02 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 267.82 15.07 4.04 4.04 Total: -1.00 -30.20 267.82 -7.10 -37.31 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -5.80 Total: -2.24 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.31 Total: -37.43 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.09 Total: -7.95 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.20 -7.10 -37.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259904542.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.203 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds