Wall clock time and date at job start Mon Mar 30 2020 20:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.44268 * 111.00390 * 2 1 4 4 C 1.54069 * 111.98116 * 219.31185 * 3 2 1 5 5 C 1.54285 * 112.28952 * 318.91279 * 4 3 2 6 6 C 1.50516 * 112.97161 * 318.30061 * 5 4 3 7 7 C 1.54508 * 108.82784 * 92.24257 * 6 5 4 8 8 C 1.45863 * 111.53286 * 282.70803 * 7 6 5 9 9 H 1.09000 * 108.79023 * 300.47375 * 8 7 6 10 10 C 1.52996 * 108.79448 * 182.24884 * 8 7 6 11 11 O 1.42898 * 109.47593 * 174.99779 * 10 8 7 12 12 C 1.34926 * 117.00310 * 180.02562 * 11 10 8 13 13 H 1.07997 * 120.00002 * 359.97438 * 12 11 10 14 14 C 1.38632 * 119.99933 * 180.02562 * 12 11 10 15 15 N 1.31582 * 120.00349 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99896 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47060 * 90.00118 * 16 14 12 18 18 H 1.48502 * 109.47128 * 209.99987 * 16 14 12 19 19 H 1.48494 * 109.47110 * 330.00168 * 16 14 12 20 20 H 1.09000 * 109.46859 * 298.01667 * 1 2 3 21 21 H 1.08993 * 109.47069 * 58.01024 * 1 2 3 22 22 H 1.08999 * 109.47103 * 178.02184 * 1 2 3 23 23 H 1.09002 * 108.97553 * 339.95802 * 3 2 1 24 24 H 1.08998 * 108.97834 * 98.66770 * 3 2 1 25 25 H 1.09000 * 108.91658 * 79.63715 * 4 3 2 26 26 H 1.09005 * 108.91590 * 198.28199 * 4 3 2 27 27 H 1.09007 * 108.76846 * 79.21533 * 5 4 3 28 28 H 1.08995 * 108.77106 * 197.37951 * 5 4 3 29 29 H 1.08998 * 109.64047 * 332.40584 * 6 5 4 30 30 H 1.09001 * 109.52742 * 212.01366 * 6 5 4 31 31 H 1.09002 * 109.05647 * 162.19914 * 7 6 5 32 32 H 1.09004 * 109.05690 * 43.21441 * 7 6 5 33 33 H 1.09001 * 109.46960 * 295.00011 * 10 8 7 34 34 H 1.09005 * 109.47306 * 54.99415 * 10 8 7 35 35 H 0.96999 * 120.00132 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9861 1.3468 0.0000 4 6 3.2247 1.4890 -0.9051 5 6 4.1834 0.2868 -0.7782 6 6 4.3614 -0.1750 0.6433 7 6 3.3282 -1.2849 0.9401 8 6 1.9987 -0.7309 1.1704 9 1 2.0448 -0.0486 2.0191 10 6 1.0409 -1.8739 1.5124 11 8 -0.2385 -1.3372 1.8547 12 6 -1.2044 -2.2194 2.1852 13 1 -0.9924 -3.2784 2.1824 14 6 -2.4692 -1.7665 2.5273 15 7 -2.7276 -0.4763 2.5302 16 14 -3.8067 -2.9880 2.9842 17 1 -3.7711 -3.2365 4.4478 18 1 -5.1323 -2.4341 2.6083 19 1 -3.5800 -4.2642 2.2597 20 1 -0.3633 0.4827 0.9072 21 1 -0.3633 0.5444 -0.8716 22 1 -0.3633 -1.0270 -0.0355 23 1 1.2091 2.0248 -0.3533 24 1 2.2582 1.6221 1.0190 25 1 2.8974 1.5721 -1.9415 26 1 3.7609 2.3974 -0.6303 27 1 3.7894 -0.5399 -1.3694 28 1 5.1562 0.5699 -1.1801 29 1 4.2034 0.6622 1.3230 30 1 5.3690 -0.5694 0.7748 31 1 3.6426 -1.8360 1.8264 32 1 3.2869 -1.9687 0.0922 33 1 0.9396 -2.5333 0.6504 34 1 1.4359 -2.4385 2.3571 35 1 -3.6127 -0.1595 2.7692 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259904542.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:29 Heat of formation + Delta-G solvation = -47.037951 kcal Electronic energy + Delta-G solvation = -15269.329754 eV Core-core repulsion = 12881.258447 eV Total energy + Delta-G solvation = -2388.071306 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73244 -38.00189 -35.12628 -34.31489 -33.35778 -29.13571 -27.96207 -26.21639 -25.08068 -23.69837 -21.29216 -20.38010 -19.50919 -17.58882 -17.36493 -16.48532 -15.92634 -15.60914 -15.11742 -14.97174 -14.75856 -14.22694 -13.91248 -13.57053 -13.27367 -13.05345 -12.79885 -12.71761 -12.19966 -12.15436 -11.94327 -11.63736 -11.47137 -11.37290 -11.28787 -11.04862 -10.96990 -10.04576 -9.15588 -8.15041 -5.82408 1.39643 1.44600 1.53731 2.33436 3.02429 3.18883 3.51559 3.97590 4.11908 4.16920 4.25891 4.33525 4.37489 4.54842 4.62480 4.66637 4.71706 4.80485 4.91717 4.94859 5.00045 5.04607 5.24798 5.26046 5.29998 5.41808 5.43105 5.48069 5.59855 5.64543 6.18513 6.24083 6.38849 7.28659 8.05199 9.08048 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.060009 B = 0.007766 C = 0.007169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.485153 B = 3604.389110 C = 3904.978578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.522 5.522 3 C 0.048 3.952 4 C -0.101 4.101 5 C -0.107 4.107 6 C -0.107 4.107 7 C -0.105 4.105 8 C 0.098 3.902 9 H 0.023 0.977 10 C 0.060 3.940 11 O -0.314 6.314 12 C -0.381 4.381 13 H 0.065 0.935 14 C -0.033 4.033 15 N -0.930 5.930 16 Si 0.997 3.003 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.263 1.263 20 H 0.015 0.985 21 H 0.046 0.954 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.028 0.972 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.496 0.860 -5.221 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.246 5.246 3 C -0.081 4.081 4 C -0.139 4.139 5 C -0.145 4.145 6 C -0.145 4.145 7 C -0.143 4.143 8 C -0.010 4.010 9 H 0.041 0.959 10 C -0.017 4.017 11 O -0.230 6.230 12 C -0.460 4.460 13 H 0.083 0.917 14 C -0.227 4.227 15 N -0.575 5.575 16 Si 0.821 3.179 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.187 1.187 20 H 0.033 0.967 21 H 0.064 0.936 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.046 0.954 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.502 0.913 -5.637 13.745 hybrid contribution -1.331 -0.241 1.192 1.803 sum 11.171 0.672 -4.445 12.042 Atomic orbital electron populations 1.22318 0.86427 1.02076 0.97863 1.61892 1.07744 1.14806 1.40162 1.22027 0.97865 0.89316 0.98882 1.21908 0.94252 0.98641 0.99133 1.21195 0.98748 0.97964 0.96576 1.21303 0.98490 0.97374 0.97319 1.20551 0.92304 0.98981 1.02474 1.20584 0.94978 0.94642 0.90824 0.95867 1.22579 0.86204 0.95706 0.97256 1.85980 1.17536 1.33025 1.86411 1.21254 0.91301 0.88784 1.44630 0.91708 1.26011 0.99466 0.98414 0.98827 1.70171 1.21865 1.14355 1.51117 0.84870 0.77085 0.77535 0.78456 1.19947 1.20514 1.18696 0.96660 0.93574 0.91901 0.92777 0.95407 0.91912 0.90759 0.92673 0.90846 0.92762 0.89749 0.90914 0.91144 0.95217 0.95190 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.82 7.68 127.69 0.98 3.80 16 2 N -0.52 -19.98 4.44 -912.39 -4.05 -24.04 16 3 C 0.05 1.57 5.17 87.16 0.45 2.02 16 4 C -0.10 -2.47 6.14 31.39 0.19 -2.27 16 5 C -0.11 -2.41 5.42 30.23 0.16 -2.25 16 6 C -0.11 -2.50 5.60 30.30 0.17 -2.33 16 7 C -0.11 -3.04 4.70 28.92 0.14 -2.90 16 8 C 0.10 3.73 2.04 42.55 0.09 3.82 16 9 H 0.02 0.97 7.24 -2.39 -0.02 0.96 16 10 C 0.06 2.71 4.71 71.98 0.34 3.05 16 11 O -0.31 -17.81 5.41 -81.95 -0.44 -18.26 16 12 C -0.38 -22.42 9.81 67.91 0.67 -21.75 16 13 H 0.07 3.62 7.77 -2.91 -0.02 3.60 16 14 C -0.03 -1.95 5.49 84.82 0.47 -1.49 16 15 N -0.93 -58.28 13.67 21.61 0.30 -57.99 16 16 Si 1.00 45.39 29.55 68.60 2.03 47.41 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 20 H 0.01 0.82 6.99 -2.39 -0.02 0.80 16 21 H 0.05 1.94 8.01 -2.39 -0.02 1.92 16 22 H 0.06 3.26 5.59 -2.39 -0.01 3.25 16 23 H 0.05 1.79 7.49 -2.39 -0.02 1.77 16 24 H 0.03 0.94 6.51 -2.39 -0.02 0.92 16 25 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.51 8.14 -2.38 -0.02 1.50 16 27 H 0.05 1.39 7.38 -2.38 -0.02 1.37 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.33 7.15 -2.39 -0.02 1.31 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.93 8.08 -2.39 -0.02 1.91 16 32 H 0.07 2.02 7.58 -2.38 -0.02 2.00 16 33 H 0.03 1.34 7.89 -2.39 -0.02 1.32 16 34 H 0.03 1.31 8.08 -2.38 -0.02 1.29 16 35 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -66.64 267.82 2.52 -64.12 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.04 Total: 9.06 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 3.65 Total: -20.31 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -3.76 Total: -82.02 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.44 Total: -18.26 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -66.64 2.52 -64.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259904542.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.084 kcal (2) G-P(sol) polarization free energy of solvation -66.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds