Wall clock time and date at job start Mon Mar 30 2020 20:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47593 * 2 1 4 4 C 1.50707 * 109.46734 * 120.00099 * 2 1 3 5 5 H 1.08000 * 120.00049 * 120.00371 * 4 2 1 6 6 C 1.37880 * 119.99951 * 299.99521 * 4 2 1 7 7 N 1.31512 * 119.99674 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99674 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47159 * 89.99937 * 8 6 4 10 10 H 1.48506 * 109.46654 * 209.99915 * 8 6 4 11 11 H 1.48500 * 109.47427 * 329.99237 * 8 6 4 12 12 N 1.46902 * 109.47247 * 239.99430 * 2 1 3 13 13 C 1.46896 * 110.99469 * 59.21985 * 12 2 1 14 14 C 1.46907 * 111.00055 * 183.16821 * 12 2 1 15 15 H 1.08997 * 109.51996 * 52.81795 * 14 12 2 16 16 C 1.53178 * 109.51914 * 172.94317 * 14 12 2 17 17 C 1.53185 * 109.03133 * 176.88643 * 16 14 12 18 18 C 1.53090 * 109.16473 * 303.01821 * 17 16 14 19 19 O 1.42911 * 109.41611 * 57.60922 * 18 17 16 20 20 C 1.42903 * 114.09577 * 298.84622 * 19 18 17 21 21 H 1.08998 * 109.46795 * 303.72103 * 1 2 3 22 22 H 1.09002 * 109.46694 * 63.72209 * 1 2 3 23 23 H 1.09002 * 109.47211 * 183.71592 * 1 2 3 24 24 H 0.96997 * 119.99156 * 180.02562 * 7 6 4 25 25 H 1.09005 * 109.47166 * 183.95161 * 13 12 2 26 26 H 1.09003 * 109.47441 * 303.94672 * 13 12 2 27 27 H 1.09002 * 109.47852 * 63.95333 * 13 12 2 28 28 H 1.08997 * 109.54546 * 296.75375 * 16 14 12 29 29 H 1.08996 * 109.54217 * 57.02058 * 16 14 12 30 30 H 1.09001 * 109.52117 * 62.92779 * 17 16 14 31 31 H 1.09002 * 109.52073 * 183.11221 * 17 16 14 32 32 H 1.09001 * 109.48015 * 297.63065 * 18 17 16 33 33 H 1.08997 * 109.48454 * 177.58994 * 18 17 16 34 34 H 1.09001 * 109.47860 * 301.17110 * 20 19 18 35 35 H 1.09002 * 109.48791 * 181.14374 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 2.1379 -0.8591 3.5566 8 14 0.6248 1.2791 2.6540 9 1 -0.8028 0.8728 2.6997 10 1 0.9760 1.9952 3.9068 11 1 0.8473 2.1766 1.4920 12 7 2.0197 -0.6926 -1.1994 13 6 1.5335 -0.0374 -2.4209 14 6 3.4863 -0.7782 -1.1960 15 1 3.8234 -1.2150 -0.2560 16 6 3.9505 -1.6546 -2.3634 17 6 5.4819 -1.6729 -2.3961 18 6 5.9995 -0.2364 -2.5063 19 8 5.5059 0.5321 -1.4071 20 6 4.0809 0.6238 -1.3526 21 1 -0.3633 0.5705 0.8548 22 1 -0.3633 0.4550 -0.9215 23 1 -0.3634 -1.0255 0.0666 24 1 1.9033 -0.5278 4.4375 25 1 1.8521 -0.6101 -3.2919 26 1 0.4448 0.0128 -2.3976 27 1 1.9425 0.9712 -2.4798 28 1 3.5765 -2.6695 -2.2287 29 1 3.5706 -1.2458 -3.2997 30 1 5.8603 -2.1272 -1.4804 31 1 5.8209 -2.2493 -3.2569 32 1 5.6538 0.2037 -3.4417 33 1 7.0892 -0.2401 -2.4869 34 1 3.7102 1.0752 -2.2729 35 1 3.7884 1.2397 -0.5021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260328853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:32 Heat of formation + Delta-G solvation = -33.579422 kcal Electronic energy + Delta-G solvation = -15451.153188 eV Core-core repulsion = 13063.665488 eV Total energy + Delta-G solvation = -2387.487701 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.42622 -36.71662 -33.27287 -32.31669 -30.57977 -28.61600 -26.11870 -24.64030 -24.18482 -22.51501 -19.90937 -18.91428 -16.82205 -16.12932 -15.66051 -15.35177 -14.50815 -14.23069 -13.91053 -13.38817 -12.96637 -12.76516 -12.46826 -12.38116 -12.23883 -11.64086 -11.37819 -10.87628 -10.77906 -10.62935 -10.54572 -10.21820 -10.17422 -9.76369 -9.48611 -9.26856 -8.98761 -8.55396 -7.28117 -6.06429 -4.05110 3.26532 3.35718 3.38491 4.18436 4.39630 4.77945 5.14439 5.18541 5.25943 5.28393 5.45026 5.52619 5.72169 5.77584 5.90118 5.98134 6.03243 6.07986 6.20746 6.28209 6.33890 6.39812 6.44310 6.56056 6.65465 6.81140 6.95777 7.24871 7.50207 7.61609 7.93290 8.07148 8.64613 8.99693 9.55241 11.06351 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036343 B = 0.010506 C = 0.009527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.257781 B = 2664.447345 C = 2938.203850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.179 3.821 3 H -0.001 1.001 4 C -0.506 4.506 5 H 0.083 0.917 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.279 1.279 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.516 5.516 13 C 0.011 3.989 14 C 0.060 3.940 15 H 0.110 0.890 16 C -0.115 4.115 17 C -0.154 4.154 18 C 0.060 3.940 19 O -0.381 6.381 20 C 0.033 3.967 21 H 0.040 0.960 22 H 0.031 0.969 23 H 0.061 0.939 24 H 0.264 0.736 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.017 0.983 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.861 1.664 -12.309 12.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.071 3.929 3 H 0.016 0.984 4 C -0.544 4.544 5 H 0.101 0.899 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.716 3.284 9 H -0.206 1.206 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.241 5.241 13 C -0.138 4.138 14 C -0.049 4.049 15 H 0.128 0.872 16 C -0.153 4.153 17 C -0.192 4.192 18 C -0.017 4.017 19 O -0.299 6.299 20 C -0.045 4.045 21 H 0.059 0.941 22 H 0.050 0.950 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.035 0.965 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.794 1.273 -11.954 12.342 hybrid contribution -0.592 1.513 0.013 1.625 sum 2.203 2.786 -11.941 12.458 Atomic orbital electron populations 1.22226 0.98497 1.01485 0.98221 1.19729 0.91500 0.92655 0.88975 0.98360 1.20955 1.31936 1.13623 0.87863 0.89921 1.24912 0.95771 0.96538 0.95834 1.69878 1.45569 1.40229 0.97874 0.86901 0.80811 0.83899 0.76822 1.20576 1.22455 1.19513 1.62134 1.07561 1.52434 1.01950 1.22538 1.00840 0.96376 0.94039 1.22268 0.88059 0.94190 1.00362 0.87197 1.21688 0.94134 1.01220 0.98225 1.22189 0.96862 0.97542 1.02641 1.22522 0.98750 0.90935 0.89503 1.87936 1.21464 1.71958 1.48535 1.23375 0.80405 0.99451 1.01289 0.94150 0.94999 0.91991 0.92618 0.92367 0.91540 0.96483 0.90955 0.92530 0.90814 0.91430 0.93995 0.89496 0.94085 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.49 37.16 0.32 -2.90 16 2 C 0.18 4.20 1.34 -68.86 -0.09 4.10 16 3 H 0.00 -0.02 5.78 -51.93 -0.30 -0.32 16 4 C -0.51 -14.02 8.42 -34.44 -0.29 -14.31 16 5 H 0.08 2.50 6.73 -52.49 -0.35 2.15 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 8 Si 0.88 21.98 24.33 -169.99 -4.14 17.85 16 9 H -0.28 -6.75 6.90 56.52 0.39 -6.36 16 10 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 12 N -0.52 -10.55 4.60 -228.12 -1.05 -11.60 16 13 C 0.01 0.18 8.51 60.06 0.51 0.69 16 14 C 0.06 1.17 2.18 -67.57 -0.15 1.02 16 15 H 0.11 2.52 6.06 -51.93 -0.31 2.21 16 16 C -0.11 -1.79 5.24 -26.54 -0.14 -1.93 16 17 C -0.15 -2.10 6.14 -26.59 -0.16 -2.26 16 18 C 0.06 0.83 6.84 37.20 0.25 1.09 16 19 O -0.38 -6.92 10.77 -35.23 -0.38 -7.30 16 20 C 0.03 0.61 5.43 37.20 0.20 0.81 16 21 H 0.04 0.92 3.37 -51.93 -0.17 0.74 16 22 H 0.03 0.59 6.11 -51.93 -0.32 0.28 16 23 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.06 0.86 6.32 -51.93 -0.33 0.53 16 26 H 0.07 1.07 6.00 -51.93 -0.31 0.76 16 27 H 0.02 0.28 6.19 -51.93 -0.32 -0.04 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 0.81 6.34 -51.93 -0.33 0.48 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.04 0.70 6.22 -51.93 -0.32 0.37 16 35 H 0.10 2.03 6.79 -51.93 -0.35 1.68 16 LS Contribution 255.29 15.07 3.85 3.85 Total: -1.00 -29.82 255.29 -5.73 -35.55 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.14 Total: -0.04 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 0.35 Total: -11.74 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.28 Total: -38.17 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.38 Total: -7.30 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.82 -5.73 -35.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260328853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.973 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds