Wall clock time and date at job start Mon Mar 30 2020 20:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47593 * 2 1 4 4 C 1.50707 * 109.46734 * 120.00099 * 2 1 3 5 5 H 1.08000 * 120.00049 * 120.00371 * 4 2 1 6 6 C 1.37880 * 119.99951 * 299.99521 * 4 2 1 7 7 N 1.31512 * 119.99674 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99674 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47159 * 89.99937 * 8 6 4 10 10 H 1.48506 * 109.46654 * 209.99915 * 8 6 4 11 11 H 1.48500 * 109.47427 * 329.99237 * 8 6 4 12 12 N 1.46902 * 109.47247 * 239.99430 * 2 1 3 13 13 C 1.46896 * 110.99469 * 59.21985 * 12 2 1 14 14 C 1.46907 * 111.00055 * 183.16821 * 12 2 1 15 15 H 1.08997 * 109.51996 * 52.81795 * 14 12 2 16 16 C 1.53178 * 109.51914 * 172.94317 * 14 12 2 17 17 C 1.53185 * 109.03133 * 176.88643 * 16 14 12 18 18 C 1.53090 * 109.16473 * 303.01821 * 17 16 14 19 19 O 1.42911 * 109.41611 * 57.60922 * 18 17 16 20 20 C 1.42903 * 114.09577 * 298.84622 * 19 18 17 21 21 H 1.08998 * 109.46795 * 303.72103 * 1 2 3 22 22 H 1.09002 * 109.46694 * 63.72209 * 1 2 3 23 23 H 1.09002 * 109.47211 * 183.71592 * 1 2 3 24 24 H 0.96997 * 119.99156 * 180.02562 * 7 6 4 25 25 H 1.09005 * 109.47166 * 183.95161 * 13 12 2 26 26 H 1.09003 * 109.47441 * 303.94672 * 13 12 2 27 27 H 1.09002 * 109.47852 * 63.95333 * 13 12 2 28 28 H 1.08997 * 109.54546 * 296.75375 * 16 14 12 29 29 H 1.08996 * 109.54217 * 57.02058 * 16 14 12 30 30 H 1.09001 * 109.52117 * 62.92779 * 17 16 14 31 31 H 1.09002 * 109.52073 * 183.11221 * 17 16 14 32 32 H 1.09001 * 109.48015 * 297.63065 * 18 17 16 33 33 H 1.08997 * 109.48454 * 177.58994 * 18 17 16 34 34 H 1.09001 * 109.47860 * 301.17110 * 20 19 18 35 35 H 1.09002 * 109.48791 * 181.14374 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 2.1379 -0.8591 3.5566 8 14 0.6248 1.2791 2.6540 9 1 -0.8028 0.8728 2.6997 10 1 0.9760 1.9952 3.9068 11 1 0.8473 2.1766 1.4920 12 7 2.0197 -0.6926 -1.1994 13 6 1.5335 -0.0374 -2.4209 14 6 3.4863 -0.7782 -1.1960 15 1 3.8234 -1.2150 -0.2560 16 6 3.9505 -1.6546 -2.3634 17 6 5.4819 -1.6729 -2.3961 18 6 5.9995 -0.2364 -2.5063 19 8 5.5059 0.5321 -1.4071 20 6 4.0809 0.6238 -1.3526 21 1 -0.3633 0.5705 0.8548 22 1 -0.3633 0.4550 -0.9215 23 1 -0.3634 -1.0255 0.0666 24 1 1.9033 -0.5278 4.4375 25 1 1.8521 -0.6101 -3.2919 26 1 0.4448 0.0128 -2.3976 27 1 1.9425 0.9712 -2.4798 28 1 3.5765 -2.6695 -2.2287 29 1 3.5706 -1.2458 -3.2997 30 1 5.8603 -2.1272 -1.4804 31 1 5.8209 -2.2493 -3.2569 32 1 5.6538 0.2037 -3.4417 33 1 7.0892 -0.2401 -2.4869 34 1 3.7102 1.0752 -2.2729 35 1 3.7884 1.2397 -0.5021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260328853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:32 Heat of formation + Delta-G solvation = -56.254044 kcal Electronic energy + Delta-G solvation = -15452.136434 eV Core-core repulsion = 13063.665488 eV Total energy + Delta-G solvation = -2388.470946 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.84740 -38.25939 -35.04086 -33.95287 -32.24288 -30.14653 -27.74355 -26.05926 -25.95570 -23.90280 -21.48342 -20.49092 -18.80893 -17.62700 -17.07548 -16.99156 -16.03359 -15.74510 -15.43380 -15.13249 -14.59672 -14.22457 -14.08761 -13.98502 -13.51289 -13.30102 -12.75305 -12.62666 -12.44142 -12.35551 -12.08909 -11.82024 -11.57267 -11.36955 -11.15183 -10.97310 -10.72797 -10.60430 -8.86466 -8.28207 -6.30840 1.28341 1.33403 1.43112 2.30698 2.86234 3.06354 3.32079 3.86270 3.95550 4.05086 4.12261 4.24012 4.40499 4.51199 4.53684 4.62976 4.68359 4.71835 4.74831 4.79169 4.91827 4.96060 5.04075 5.13072 5.16845 5.32506 5.45151 5.45893 5.65821 6.01771 6.19365 6.44294 6.70748 6.76097 7.33398 8.88470 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036343 B = 0.010506 C = 0.009527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.257781 B = 2664.447345 C = 2938.203850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.181 3.819 3 H -0.008 1.008 4 C -0.503 4.503 5 H 0.038 0.962 6 C 0.011 3.989 7 N -0.949 5.949 8 Si 0.948 3.052 9 H -0.264 1.264 10 H -0.300 1.300 11 H -0.251 1.251 12 N -0.530 5.530 13 C 0.010 3.990 14 C 0.060 3.940 15 H 0.056 0.944 16 C -0.107 4.107 17 C -0.150 4.150 18 C 0.052 3.948 19 O -0.408 6.408 20 C 0.042 3.958 21 H 0.033 0.967 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.265 0.735 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.025 0.975 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.180 2.831 -15.275 15.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.073 3.927 3 H 0.010 0.990 4 C -0.542 4.542 5 H 0.056 0.944 6 C -0.186 4.186 7 N -0.589 5.589 8 Si 0.775 3.225 9 H -0.189 1.189 10 H -0.228 1.228 11 H -0.176 1.176 12 N -0.255 5.255 13 C -0.138 4.138 14 C -0.049 4.049 15 H 0.074 0.926 16 C -0.145 4.145 17 C -0.188 4.188 18 C -0.024 4.024 19 O -0.326 6.326 20 C -0.036 4.036 21 H 0.052 0.948 22 H 0.088 0.912 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.113 2.435 -14.959 15.303 hybrid contribution -0.261 1.049 0.875 1.391 sum 1.852 3.484 -14.084 14.626 Atomic orbital electron populations 1.22134 0.96699 1.01358 0.99887 1.19548 0.92784 0.91691 0.88629 0.99039 1.21206 1.30604 1.12212 0.90141 0.94404 1.25776 0.97473 0.99933 0.95420 1.70040 1.47830 1.42547 0.98518 0.85877 0.79433 0.80099 0.77110 1.18942 1.22777 1.17554 1.62072 1.08217 1.52821 1.02361 1.22655 1.01450 0.96917 0.92771 1.22154 0.87760 0.95305 0.99679 0.92558 1.21643 0.95628 0.99957 0.97272 1.22190 0.95253 0.98048 1.03336 1.22851 1.00083 0.90394 0.89046 1.87898 1.20900 1.72971 1.50816 1.23140 0.81112 0.98322 1.01017 0.94833 0.91178 0.92766 0.92624 0.89724 0.90543 0.95677 0.91654 0.90019 0.92812 0.87715 0.91591 0.87267 0.91525 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.98 8.49 71.98 0.61 -5.37 16 2 C 0.18 8.47 1.34 44.17 0.06 8.53 16 3 H -0.01 -0.37 5.78 -2.39 -0.01 -0.39 16 4 C -0.50 -29.08 8.42 25.60 0.22 -28.87 16 5 H 0.04 2.47 6.73 -2.91 -0.02 2.45 16 6 C 0.01 0.65 5.45 84.66 0.46 1.11 16 7 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 8 Si 0.95 45.58 24.33 68.60 1.67 47.25 16 9 H -0.26 -11.97 6.90 99.48 0.69 -11.28 16 10 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 11 H -0.25 -11.24 6.53 99.48 0.65 -10.59 16 12 N -0.53 -21.18 4.60 -875.64 -4.03 -25.21 16 13 C 0.01 0.29 8.51 127.69 1.09 1.37 16 14 C 0.06 2.34 2.18 45.00 0.10 2.44 16 15 H 0.06 2.77 6.06 -2.39 -0.01 2.76 16 16 C -0.11 -3.14 5.24 30.72 0.16 -2.98 16 17 C -0.15 -3.75 6.14 30.69 0.19 -3.56 16 18 C 0.05 1.31 6.84 72.01 0.49 1.80 16 19 O -0.41 -14.49 10.77 -148.98 -1.60 -16.10 16 20 C 0.04 1.56 5.43 72.01 0.39 1.95 16 21 H 0.03 1.43 3.37 -2.39 -0.01 1.42 16 22 H 0.07 2.37 6.11 -2.39 -0.01 2.35 16 23 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 25 H 0.08 2.10 6.32 -2.38 -0.02 2.08 16 26 H 0.08 2.14 6.00 -2.39 -0.01 2.12 16 27 H 0.02 0.72 6.19 -2.39 -0.01 0.70 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.08 2.00 6.34 -2.39 -0.02 1.98 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.07 2.08 6.22 -2.39 -0.01 2.07 16 35 H 0.06 2.72 6.79 -2.39 -0.02 2.71 16 Total: -1.00 -67.91 255.29 1.10 -66.82 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 1.00 Total: 10.92 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 3.76 Total: -23.58 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -3.73 Total: -85.31 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -1.60 Total: -16.10 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.67 Total: 47.25 kcal Total: -67.91 1.10 -66.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260328853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.561 kcal (2) G-P(sol) polarization free energy of solvation -67.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds