Wall clock time and date at job start Mon Mar 30 2020 20:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.39780 * 111.00142 * 2 1 4 4 C 1.54430 * 111.76599 * 189.13699 * 3 2 1 5 5 C 1.50749 * 109.02653 * 282.60303 * 4 3 2 6 6 C 1.54177 * 112.60835 * 93.01185 * 5 4 3 7 7 H 1.08999 * 108.97709 * 79.04668 * 6 5 4 8 8 O 1.42899 * 108.98059 * 197.83900 * 6 5 4 9 9 C 1.53811 * 111.97592 * 318.48226 * 6 5 4 10 10 H 1.09007 * 109.04870 * 79.58801 * 9 6 5 11 11 C 1.52992 * 109.05408 * 198.56112 * 9 6 5 12 12 C 1.50699 * 109.47366 * 185.00057 * 11 9 6 13 13 H 1.07995 * 119.99732 * 0.02562 * 12 11 9 14 14 C 1.37886 * 119.99814 * 179.97438 * 12 11 9 15 15 N 1.31518 * 120.00049 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99780 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47238 * 90.00008 * 16 14 12 18 18 H 1.48499 * 109.47147 * 210.00185 * 16 14 12 19 19 H 1.48503 * 109.47043 * 330.00077 * 16 14 12 20 20 C 1.47632 * 110.99642 * 128.90593 * 2 1 3 21 21 H 1.08999 * 109.47349 * 291.09929 * 1 2 3 22 22 H 1.09000 * 109.46628 * 51.09897 * 1 2 3 23 23 H 1.09004 * 109.47084 * 171.09481 * 1 2 3 24 24 H 1.08995 * 109.01789 * 309.72231 * 3 2 1 25 25 H 1.08996 * 109.01999 * 68.61979 * 3 2 1 26 26 H 1.08993 * 109.54390 * 162.74089 * 4 3 2 27 27 H 1.09002 * 109.54996 * 42.46571 * 4 3 2 28 28 H 1.09002 * 108.85972 * 332.21006 * 5 4 3 29 29 H 1.08997 * 108.86144 * 213.81889 * 5 4 3 30 30 H 0.96701 * 114.00357 * 300.00296 * 8 6 5 31 31 H 1.09009 * 109.47148 * 305.00217 * 11 9 6 32 32 H 1.09001 * 109.46957 * 64.99450 * 11 9 6 33 33 H 0.96998 * 119.99644 * 180.02562 * 15 14 12 34 34 H 1.08996 * 109.74875 * 30.68779 * 20 2 1 35 35 H 1.09005 * 109.78620 * 269.98392 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9700 1.3049 0.0000 4 6 3.4972 1.3321 -0.2277 5 6 4.1921 0.9512 1.0546 6 6 4.4982 -0.5577 1.1373 7 1 5.3846 -0.7728 0.5407 8 8 4.7592 -0.9050 2.4987 9 6 3.3286 -1.4115 0.6187 10 1 3.3543 -1.4256 -0.4710 11 6 3.4843 -2.8413 1.1401 12 6 2.4132 -3.7146 0.5393 13 1 1.6937 -3.2921 -0.1463 14 6 2.3525 -5.0533 0.8641 15 7 3.2291 -5.5679 1.6987 16 14 1.0253 -6.1360 0.1188 17 1 1.5205 -6.7218 -1.1527 18 1 0.6858 -7.2269 1.0674 19 1 -0.1857 -5.3198 -0.1509 20 6 1.9980 -0.8656 1.0726 21 1 -0.3634 0.3699 0.9587 22 1 -0.3632 0.6454 -0.7998 23 1 -0.3633 -1.0153 -0.1591 24 1 1.4825 1.8725 -0.7926 25 1 1.7466 1.7712 0.9595 26 1 3.8038 2.3350 -0.5246 27 1 3.7619 0.6216 -1.0109 28 1 3.5564 1.2282 1.8956 29 1 5.1283 1.5048 1.1260 30 1 5.5098 -0.4354 2.8875 31 1 4.4655 -3.2253 0.8605 32 1 3.3890 -2.8444 2.2260 33 1 3.1866 -6.5097 1.9268 34 1 1.3064 -1.6875 1.2573 35 1 2.1305 -0.2837 1.9847 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260619491.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:43 Heat of formation + Delta-G solvation = -55.983841 kcal Electronic energy + Delta-G solvation = -15277.994531 eV Core-core repulsion = 12889.535302 eV Total energy + Delta-G solvation = -2388.459229 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.28766 -36.30589 -33.65176 -32.81893 -31.50928 -27.54378 -26.60561 -24.71138 -23.59662 -21.33986 -20.39780 -18.56860 -16.81464 -16.03788 -15.54225 -15.21239 -14.49470 -14.27863 -13.82124 -13.11002 -12.93272 -12.52630 -12.28099 -12.09036 -11.80390 -11.56300 -11.12842 -10.97156 -10.70959 -10.65977 -10.36853 -10.24085 -10.00224 -9.69866 -9.26296 -8.99199 -8.78695 -8.21552 -7.69961 -5.86620 -3.87418 3.38814 3.44932 3.48145 4.42569 4.55624 4.86992 5.04029 5.17536 5.30074 5.48508 5.55271 5.68793 5.72807 5.74866 5.82348 6.05400 6.08273 6.14223 6.21616 6.26043 6.36418 6.56836 6.59401 6.78384 7.06758 7.32865 7.62080 7.87771 7.94141 8.04698 8.23069 8.24821 8.59417 9.21760 9.74835 11.24508 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031629 B = 0.010309 C = 0.008229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.043855 B = 2715.494432 C = 3401.644523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.563 5.563 3 C 0.080 3.920 4 C -0.114 4.114 5 C -0.152 4.152 6 C 0.107 3.893 7 H 0.043 0.957 8 O -0.552 6.552 9 C -0.070 4.070 10 H 0.078 0.922 11 C 0.037 3.963 12 C -0.514 4.514 13 H 0.058 0.942 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.887 3.113 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.275 1.275 20 C 0.080 3.920 21 H 0.018 0.982 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.010 0.990 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.359 0.641 31 H 0.012 0.988 32 H 0.026 0.974 33 H 0.258 0.742 34 H 0.093 0.907 35 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.380 13.423 -2.048 13.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.287 5.287 3 C -0.050 4.050 4 C -0.152 4.152 5 C -0.190 4.190 6 C 0.048 3.952 7 H 0.061 0.939 8 O -0.355 6.355 9 C -0.089 4.089 10 H 0.096 0.904 11 C -0.001 4.001 12 C -0.552 4.552 13 H 0.076 0.924 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.715 3.285 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.200 1.200 20 C -0.045 4.045 21 H 0.036 0.964 22 H 0.076 0.924 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.028 0.972 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.203 0.797 31 H 0.030 0.970 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.704 12.683 -2.461 12.938 hybrid contribution -0.399 0.133 0.415 0.591 sum -1.103 12.816 -2.046 13.025 Atomic orbital electron populations 1.22285 0.87529 1.02428 0.99103 1.58840 1.06925 1.12746 1.50154 1.20896 0.95405 0.89955 0.98754 1.21381 0.94638 1.00976 0.98202 1.22198 1.00217 0.97822 0.98765 1.22464 0.98375 0.91648 0.82668 0.93896 1.86772 1.53440 1.68325 1.26975 1.21122 0.90396 0.97370 1.00033 0.90359 1.18993 0.96500 0.87539 0.97060 1.21357 1.13869 0.93679 1.26334 0.92405 1.25020 0.95960 0.98192 0.95347 1.69993 1.35792 1.12976 1.34706 0.86679 0.82461 0.80412 0.78923 1.20847 1.21467 1.19960 1.21959 0.97818 0.95259 0.89483 0.96375 0.92446 0.91070 0.92071 0.97206 0.92022 0.90426 0.91850 0.92987 0.79653 0.96976 0.95542 0.93265 0.88830 0.95232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.43 60.07 0.57 1.09 16 2 N -0.56 -9.70 4.19 -248.32 -1.04 -10.74 16 3 C 0.08 1.16 4.93 -6.74 -0.03 1.13 16 4 C -0.11 -1.57 5.65 -27.11 -0.15 -1.72 16 5 C -0.15 -2.20 4.92 -27.24 -0.13 -2.33 16 6 C 0.11 1.92 3.15 -25.69 -0.08 1.84 16 7 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 8 O -0.55 -10.31 11.94 -35.23 -0.42 -10.73 16 9 C -0.07 -1.50 1.62 -91.30 -0.15 -1.65 16 10 H 0.08 1.73 7.26 -51.92 -0.38 1.35 16 11 C 0.04 0.98 3.85 -27.89 -0.11 0.87 16 12 C -0.51 -14.67 7.93 -34.44 -0.27 -14.94 16 13 H 0.06 1.61 7.33 -52.49 -0.38 1.23 16 14 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 15 N -0.89 -27.59 13.29 55.43 0.74 -26.86 16 16 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.08 1.62 4.63 -4.52 -0.02 1.59 16 21 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 22 H 0.06 0.74 7.86 -51.93 -0.41 0.33 16 23 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 24 H 0.06 0.79 7.81 -51.93 -0.41 0.38 16 25 H 0.01 0.15 7.54 -51.93 -0.39 -0.24 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.08 1.16 7.11 -51.93 -0.37 0.79 16 28 H 0.06 0.96 6.57 -51.93 -0.34 0.62 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.36 4.78 9.08 45.56 0.41 5.20 16 31 H 0.01 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.03 0.77 7.51 -51.93 -0.39 0.38 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.09 2.12 6.12 -51.93 -0.32 1.80 16 35 H 0.03 0.59 6.67 -51.93 -0.35 0.25 16 LS Contribution 269.78 15.07 4.07 4.07 Total: -1.00 -31.65 269.78 -7.15 -38.80 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.99 Total: 0.98 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -0.48 Total: -12.60 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.30 Total: -37.60 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.42 Total: -10.73 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.65 -7.15 -38.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260619491.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.186 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds