Wall clock time and date at job start Mon Mar 30 2020 20:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47802 * 111.00334 * 2 1 4 4 C 1.45864 * 112.91961 * 206.13471 * 3 2 1 5 5 C 1.54650 * 111.51309 * 298.63469 * 4 3 2 6 6 C 1.50458 * 108.77767 * 77.32656 * 5 4 3 7 7 H 1.08998 * 108.76880 * 28.56229 * 6 5 4 8 8 C 1.53001 * 108.76758 * 146.84525 * 6 5 4 9 9 C 1.50694 * 109.47168 * 296.69775 * 8 6 5 10 10 H 1.08000 * 120.00563 * 0.02562 * 9 8 6 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 8 6 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 C 1.54292 * 112.94513 * 267.70484 * 6 5 4 18 18 H 1.09006 * 108.91558 * 162.48202 * 17 6 5 19 19 O 1.42899 * 108.91799 * 281.12368 * 17 6 5 20 20 C 1.44274 * 111.00125 * 121.98434 * 2 1 3 21 21 H 1.09001 * 109.46863 * 298.01837 * 1 2 3 22 22 H 1.09008 * 109.47029 * 58.01133 * 1 2 3 23 23 H 1.08997 * 109.47437 * 178.01657 * 1 2 3 24 24 H 1.09005 * 108.79276 * 327.02302 * 3 2 1 25 25 H 1.09000 * 108.79019 * 85.35985 * 3 2 1 26 26 H 1.08995 * 109.05824 * 59.21960 * 4 3 2 27 27 H 1.09004 * 109.05493 * 178.20011 * 4 3 2 28 28 H 1.09004 * 109.68015 * 317.50069 * 5 4 3 29 29 H 1.08996 * 109.54446 * 197.07558 * 5 4 3 30 30 H 1.09007 * 109.46922 * 176.69477 * 8 6 5 31 31 H 1.09003 * 109.46836 * 56.70233 * 8 6 5 32 32 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 33 33 H 0.96704 * 113.99757 * 180.02562 * 19 17 6 34 34 H 1.09002 * 108.97524 * 20.04376 * 20 2 1 35 35 H 1.08997 * 108.97637 * 261.33390 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3798 0.0000 4 6 3.3283 1.4778 -0.5918 5 6 4.3620 0.6373 0.1935 6 6 4.1834 -0.8120 -0.1688 7 1 3.7884 -0.8739 -1.1829 8 6 5.5490 -1.5009 -0.1304 9 6 6.4488 -0.8912 -1.1741 10 1 6.0835 -0.0919 -1.8019 11 6 7.7386 -1.3537 -1.3277 12 7 8.1837 -2.3267 -0.5629 13 14 8.8538 -0.5984 -2.6219 14 1 10.1793 -1.2670 -2.5845 15 1 8.2460 -0.7780 -3.9649 16 1 9.0229 0.8507 -2.3449 17 6 3.2246 -1.5565 0.7836 18 1 2.8974 -2.4796 0.3051 19 8 3.9257 -1.8816 1.9857 20 6 1.9860 -0.7134 1.1424 21 1 -0.3633 0.4828 0.9072 22 1 -0.3633 0.5444 -0.8717 23 1 -0.3634 -1.0270 -0.0356 24 1 1.3164 2.0179 -0.5617 25 1 2.0466 1.7375 1.0285 26 1 3.2868 1.1221 -1.6212 27 1 3.6432 2.5214 -0.5886 28 1 4.2042 0.7681 1.2641 29 1 5.3694 0.9584 -0.0709 30 1 5.4251 -2.5647 -0.3338 31 1 5.9947 -1.3692 0.8556 32 1 9.0910 -2.6523 -0.6712 33 1 3.3899 -2.3531 2.6381 34 1 1.2090 -1.3722 1.5303 35 1 2.2580 0.0051 1.9156 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260637422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:58 Heat of formation + Delta-G solvation = -55.178368 kcal Electronic energy + Delta-G solvation = -15168.128607 eV Core-core repulsion = 12779.704306 eV Total energy + Delta-G solvation = -2388.424301 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.23616 -36.09934 -34.44949 -32.48599 -30.96016 -28.49639 -26.28106 -24.55364 -23.66684 -21.41249 -20.27341 -18.59411 -16.78252 -16.02237 -15.57814 -15.39901 -14.52501 -14.28953 -13.61416 -13.17045 -12.86800 -12.76223 -12.48340 -11.86401 -11.84185 -11.71766 -11.37289 -10.85064 -10.78380 -10.48916 -10.35276 -9.97372 -9.90927 -9.63351 -9.32491 -8.81579 -8.76915 -8.18357 -8.11298 -5.83985 -3.84770 3.41339 3.45456 3.47925 3.99975 4.57340 4.96429 5.08830 5.15054 5.28305 5.39880 5.50911 5.52608 5.63582 5.71217 5.82691 5.87339 5.98086 6.09150 6.17617 6.25606 6.50114 6.81987 6.89819 7.07942 7.16659 7.27257 7.36832 7.48201 7.90658 8.11129 8.26875 8.27722 8.62516 9.24103 9.77016 11.27231 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041579 B = 0.008581 C = 0.007556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.257966 B = 3262.425736 C = 3704.962002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.528 5.528 3 C 0.063 3.937 4 C -0.123 4.123 5 C -0.102 4.102 6 C -0.062 4.062 7 H 0.069 0.931 8 C 0.034 3.966 9 C -0.514 4.514 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.896 5.896 13 Si 0.887 3.113 14 H -0.289 1.289 15 H -0.278 1.278 16 H -0.278 1.278 17 C 0.115 3.885 18 H 0.045 0.955 19 O -0.551 6.551 20 C 0.025 3.975 21 H 0.020 0.980 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.031 0.969 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.009 0.991 31 H 0.025 0.975 32 H 0.258 0.742 33 H 0.358 0.642 34 H 0.054 0.946 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.123 4.936 2.982 15.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.253 5.253 3 C -0.064 4.064 4 C -0.161 4.161 5 C -0.139 4.139 6 C -0.081 4.081 7 H 0.087 0.913 8 C -0.003 4.003 9 C -0.553 4.553 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.535 5.535 13 Si 0.715 3.285 14 H -0.215 1.215 15 H -0.204 1.204 16 H -0.204 1.204 17 C 0.056 3.944 18 H 0.063 0.937 19 O -0.353 6.353 20 C -0.104 4.104 21 H 0.038 0.962 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.027 0.973 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.202 0.798 34 H 0.073 0.927 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.307 4.886 2.264 14.355 hybrid contribution -0.184 0.436 0.319 0.571 sum -13.490 5.322 2.583 14.730 Atomic orbital electron populations 1.22454 0.87658 1.01822 1.00096 1.61462 1.06788 1.14607 1.42486 1.21054 0.97533 0.88356 0.99423 1.20714 0.94334 0.99851 1.01189 1.21416 0.99378 0.95157 0.97979 1.20915 0.97103 0.94042 0.96028 0.91297 1.19044 0.89229 0.94873 0.97158 1.21315 0.97107 1.18631 1.18197 0.92732 1.25017 0.98160 0.95240 0.96101 1.69983 1.16910 1.27398 1.39235 0.86752 0.80000 0.79375 0.82394 1.21464 1.20391 1.20382 1.22431 0.90471 0.95969 0.85566 0.93678 1.86810 1.40894 1.78988 1.28626 1.22760 0.97801 0.98043 0.91783 0.96166 0.91485 0.91555 0.92273 0.95076 0.91297 0.92392 0.93572 0.89874 0.97291 0.95695 0.93217 0.79812 0.92741 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.18 60.06 0.55 0.86 16 2 N -0.53 -7.62 4.48 -247.87 -1.11 -8.73 16 3 C 0.06 0.89 4.96 -6.70 -0.03 0.86 16 4 C -0.12 -1.99 5.53 -29.24 -0.16 -2.15 16 5 C -0.10 -2.03 4.88 -27.13 -0.13 -2.16 16 6 C -0.06 -1.35 1.66 -91.21 -0.15 -1.51 16 7 H 0.07 1.55 7.37 -51.93 -0.38 1.17 16 8 C 0.03 0.93 3.82 -27.89 -0.11 0.82 16 9 C -0.51 -14.90 7.92 -34.44 -0.27 -15.17 16 10 H 0.05 1.52 7.31 -52.49 -0.38 1.14 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.98 13.29 55.43 0.74 -27.25 16 13 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.12 2.11 3.37 -25.50 -0.09 2.02 16 18 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 19 O -0.55 -10.34 12.01 -35.23 -0.42 -10.77 16 20 C 0.03 0.38 4.75 -4.67 -0.02 0.35 16 21 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 22 H 0.07 0.67 8.00 -51.92 -0.42 0.26 16 23 H 0.07 0.68 8.06 -51.93 -0.42 0.27 16 24 H 0.06 0.72 7.71 -51.93 -0.40 0.32 16 25 H 0.03 0.43 7.24 -51.93 -0.38 0.05 16 26 H 0.07 1.18 7.58 -51.93 -0.39 0.79 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.90 7.14 -51.93 -0.37 0.53 16 29 H 0.08 1.87 6.44 -51.93 -0.33 1.53 16 30 H 0.01 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.02 0.74 7.57 -51.93 -0.39 0.35 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.36 4.72 9.05 45.56 0.41 5.13 16 34 H 0.05 0.68 7.53 -51.93 -0.39 0.29 16 35 H 0.05 0.71 6.50 -51.93 -0.34 0.37 16 LS Contribution 270.53 15.07 4.08 4.08 Total: -1.00 -32.44 270.53 -7.26 -39.71 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.01 Total: 0.25 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -0.51 Total: -14.53 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.38 Total: -35.98 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.42 Total: -10.77 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.44 -7.26 -39.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260637422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.472 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds