Wall clock time and date at job start Mon Mar 30 2020 20:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.44265 * 111.00136 * 2 1 4 4 C 1.54066 * 111.97820 * 219.31113 * 3 2 1 5 5 C 1.54299 * 112.28626 * 318.91558 * 4 3 2 6 6 H 1.09000 * 108.76760 * 79.21365 * 5 4 3 7 7 O 1.42900 * 108.77048 * 197.38018 * 5 4 3 8 8 C 1.50460 * 113.03341 * 318.30028 * 5 4 3 9 9 H 1.09003 * 109.67804 * 332.27269 * 8 5 4 10 10 C 1.53002 * 109.56780 * 211.95918 * 8 5 4 11 11 C 1.50706 * 109.47153 * 175.62212 * 10 8 5 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 8 13 13 C 1.37871 * 120.00434 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 C 1.54507 * 108.85950 * 92.15230 * 8 5 4 20 20 C 1.45869 * 111.58410 * 282.82030 * 19 8 5 21 21 H 1.08998 * 109.47003 * 298.03314 * 1 2 3 22 22 H 1.09007 * 109.46582 * 58.02497 * 1 2 3 23 23 H 1.08993 * 109.47086 * 178.02412 * 1 2 3 24 24 H 1.09005 * 108.98376 * 339.94978 * 3 2 1 25 25 H 1.09002 * 108.98556 * 98.74863 * 3 2 1 26 26 H 1.09005 * 108.91849 * 79.63750 * 4 3 2 27 27 H 1.08995 * 108.92376 * 198.19437 * 4 3 2 28 28 H 0.96703 * 113.99797 * 303.50703 * 7 5 4 29 29 H 1.09004 * 109.47178 * 55.63002 * 10 8 5 30 30 H 1.08993 * 109.47411 * 295.62684 * 10 8 5 31 31 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 32 32 H 1.08995 * 109.06147 * 43.36382 * 19 8 5 33 33 H 1.09005 * 109.05661 * 162.35183 * 19 8 5 34 34 H 1.08997 * 108.78891 * 182.21786 * 20 19 8 35 35 H 1.09003 * 108.79053 * 300.43454 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9861 1.3468 0.0000 4 6 3.2247 1.4890 -0.9051 5 6 4.1834 0.2866 -0.7781 6 1 3.7893 -0.5401 -1.3693 7 8 5.4588 0.6577 -1.3050 8 6 4.3623 -0.1762 0.6423 9 1 4.2071 0.6607 1.3233 10 6 5.7761 -0.7313 0.8262 11 6 5.9890 -1.0946 2.2733 12 1 5.1950 -0.9448 2.9899 13 6 7.1971 -1.6180 2.6822 14 7 8.1621 -1.8053 1.8085 15 14 7.4607 -2.0689 4.4757 16 1 8.0103 -0.8977 5.2049 17 1 6.1645 -2.4657 5.0820 18 1 8.4167 -3.2015 4.5661 19 6 3.3282 -1.2848 0.9404 20 6 1.9986 -0.7306 1.1705 21 1 -0.3633 0.4830 0.9071 22 1 -0.3633 0.5443 -0.8718 23 1 -0.3633 -1.0270 -0.0354 24 1 1.2092 2.0249 -0.3534 25 1 2.2596 1.6217 1.0187 26 1 2.8974 1.5720 -1.9415 27 1 3.7600 2.3981 -0.6315 28 1 5.4308 0.9689 -2.2201 29 1 6.5043 0.0239 0.5304 30 1 5.9013 -1.6192 0.2065 31 1 8.0252 -1.5714 0.8771 32 1 3.2866 -1.9698 0.0937 33 1 3.6418 -1.8348 1.8278 34 1 1.3163 -1.5448 1.4145 35 1 2.0447 -0.0480 2.0191 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260705296.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:01 Heat of formation + Delta-G solvation = -60.360111 kcal Electronic energy + Delta-G solvation = -15175.828829 eV Core-core repulsion = 12787.179830 eV Total energy + Delta-G solvation = -2388.648999 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.29130 -36.45092 -34.20317 -32.25913 -31.42123 -28.68547 -26.12485 -24.26845 -23.55289 -21.81584 -20.16348 -19.01128 -16.85813 -16.38351 -15.49243 -15.13775 -14.74571 -14.08724 -13.67613 -13.49585 -13.00685 -12.89012 -12.34359 -12.04123 -11.84654 -11.61481 -11.18463 -11.07115 -10.83986 -10.53175 -10.48837 -10.07372 -9.96519 -9.78163 -9.27421 -9.13515 -8.31971 -8.19391 -8.13171 -6.19766 -3.86789 3.49500 3.53425 3.68732 4.06082 4.65174 4.82596 4.98299 5.17651 5.24132 5.38158 5.46196 5.55885 5.57906 5.67817 5.79980 5.83758 5.86340 6.02615 6.08997 6.12005 6.37044 6.60266 6.66688 6.80869 7.05546 7.13184 7.23252 7.32094 7.74625 7.88895 8.24808 8.43622 8.66800 9.07202 9.85189 11.21116 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037122 B = 0.008868 C = 0.007574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.092920 B = 3156.594905 C = 3696.173901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.538 5.538 3 C 0.060 3.940 4 C -0.141 4.141 5 C 0.118 3.882 6 H 0.048 0.952 7 O -0.557 6.557 8 C -0.063 4.063 9 H 0.056 0.944 10 C 0.026 3.974 11 C -0.597 4.597 12 H 0.046 0.954 13 C 0.012 3.988 14 N -0.918 5.918 15 Si 1.068 2.932 16 H -0.290 1.290 17 H -0.290 1.290 18 H -0.286 1.286 19 C -0.109 4.109 20 C 0.059 3.941 21 H 0.022 0.978 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.357 0.643 29 H 0.022 0.978 30 H 0.003 0.997 31 H 0.271 0.729 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.965 4.843 -4.470 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.263 5.263 3 C -0.069 4.069 4 C -0.179 4.179 5 C 0.060 3.940 6 H 0.066 0.934 7 O -0.360 6.360 8 C -0.081 4.081 9 H 0.074 0.926 10 C -0.011 4.011 11 C -0.636 4.636 12 H 0.064 0.936 13 C -0.191 4.191 14 N -0.554 5.554 15 Si 0.897 3.103 16 H -0.217 1.217 17 H -0.217 1.217 18 H -0.211 1.211 19 C -0.147 4.147 20 C -0.068 4.068 21 H 0.040 0.960 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.201 0.799 29 H 0.040 0.960 30 H 0.021 0.979 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.522 3.790 -3.224 13.474 hybrid contribution -1.734 1.307 -0.938 2.366 sum -14.256 5.098 -4.162 15.701 Atomic orbital electron populations 1.22435 0.87750 1.01901 0.99975 1.61660 1.06962 1.14771 1.42880 1.21817 0.96407 0.89426 0.99288 1.22689 0.96218 0.99700 0.99329 1.21690 0.81680 0.93974 0.96695 0.93400 1.86853 1.30700 1.87515 1.30934 1.20836 0.98465 0.96857 0.91968 0.92556 1.19014 0.90519 0.95281 0.96249 1.22148 1.01232 1.45945 0.94231 0.93601 1.25752 0.92760 0.94749 1.05860 1.70699 1.34332 1.45768 1.04636 0.83572 0.75362 0.76693 0.74677 1.21679 1.21664 1.21134 1.20602 0.92406 0.98500 1.03184 1.21169 0.97811 0.97631 0.90193 0.95977 0.91766 0.91498 0.92334 0.93799 0.92589 0.91546 0.79854 0.95950 0.97860 0.91838 0.92429 0.89441 0.92074 0.94658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.19 60.07 0.55 0.86 16 2 N -0.54 -7.73 4.48 -247.88 -1.11 -8.84 16 3 C 0.06 0.84 5.18 -4.68 -0.02 0.81 16 4 C -0.14 -2.09 5.71 -25.49 -0.15 -2.24 16 5 C 0.12 2.19 2.88 -27.32 -0.08 2.11 16 6 H 0.05 0.90 7.38 -51.93 -0.38 0.52 16 7 O -0.56 -10.83 11.28 -35.23 -0.40 -11.23 16 8 C -0.06 -1.36 1.75 -91.10 -0.16 -1.52 16 9 H 0.06 1.26 7.16 -51.93 -0.37 0.89 16 10 C 0.03 0.71 3.18 -27.88 -0.09 0.63 16 11 C -0.60 -17.46 8.16 -34.44 -0.28 -17.74 16 12 H 0.05 1.31 7.22 -52.49 -0.38 0.93 16 13 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 14 N -0.92 -29.36 13.65 55.43 0.76 -28.60 16 15 Si 1.07 26.18 29.90 -169.99 -5.08 21.09 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 C -0.11 -2.12 4.85 -29.31 -0.14 -2.26 16 20 C 0.06 0.93 4.96 -6.71 -0.03 0.90 16 21 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 22 H 0.06 0.63 8.01 -51.92 -0.42 0.22 16 23 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 24 H 0.06 0.69 7.49 -51.93 -0.39 0.30 16 25 H 0.04 0.66 6.51 -51.93 -0.34 0.32 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.36 5.00 9.04 45.56 0.41 5.41 16 29 H 0.02 0.66 6.90 -51.93 -0.36 0.30 16 30 H 0.00 0.09 8.00 -51.93 -0.42 -0.33 16 31 H 0.27 8.76 7.22 -40.82 -0.29 8.47 16 32 H 0.06 1.11 7.59 -51.93 -0.39 0.72 16 33 H 0.09 1.87 6.66 -51.93 -0.35 1.52 16 34 H 0.06 0.87 7.74 -51.93 -0.40 0.46 16 35 H 0.04 0.57 7.24 -51.93 -0.38 0.19 16 LS Contribution 268.61 15.07 4.05 4.05 Total: -1.00 -32.93 268.61 -7.22 -40.15 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -4.93 Total: 1.56 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -0.50 Total: -18.18 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.35 Total: -37.44 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.40 Total: -11.23 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -5.08 Total: 21.09 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.93 -7.22 -40.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705296.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.209 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds