Wall clock time and date at job start Mon Mar 30 2020 20:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.44265 * 111.00136 * 2 1 4 4 C 1.54066 * 111.97820 * 219.31113 * 3 2 1 5 5 C 1.54299 * 112.28626 * 318.91558 * 4 3 2 6 6 H 1.09000 * 108.76760 * 79.21365 * 5 4 3 7 7 O 1.42900 * 108.77048 * 197.38018 * 5 4 3 8 8 C 1.50460 * 113.03341 * 318.30028 * 5 4 3 9 9 H 1.09003 * 109.67804 * 332.27269 * 8 5 4 10 10 C 1.53002 * 109.56780 * 211.95918 * 8 5 4 11 11 C 1.50706 * 109.47153 * 175.62212 * 10 8 5 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 8 13 13 C 1.37871 * 120.00434 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 C 1.54507 * 108.85950 * 92.15230 * 8 5 4 20 20 C 1.45869 * 111.58410 * 282.82030 * 19 8 5 21 21 H 1.08998 * 109.47003 * 298.03314 * 1 2 3 22 22 H 1.09007 * 109.46582 * 58.02497 * 1 2 3 23 23 H 1.08993 * 109.47086 * 178.02412 * 1 2 3 24 24 H 1.09005 * 108.98376 * 339.94978 * 3 2 1 25 25 H 1.09002 * 108.98556 * 98.74863 * 3 2 1 26 26 H 1.09005 * 108.91849 * 79.63750 * 4 3 2 27 27 H 1.08995 * 108.92376 * 198.19437 * 4 3 2 28 28 H 0.96703 * 113.99797 * 303.50703 * 7 5 4 29 29 H 1.09004 * 109.47178 * 55.63002 * 10 8 5 30 30 H 1.08993 * 109.47411 * 295.62684 * 10 8 5 31 31 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 32 32 H 1.08995 * 109.06147 * 43.36382 * 19 8 5 33 33 H 1.09005 * 109.05661 * 162.35183 * 19 8 5 34 34 H 1.08997 * 108.78891 * 182.21786 * 20 19 8 35 35 H 1.09003 * 108.79053 * 300.43454 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9861 1.3468 0.0000 4 6 3.2247 1.4890 -0.9051 5 6 4.1834 0.2866 -0.7781 6 1 3.7893 -0.5401 -1.3693 7 8 5.4588 0.6577 -1.3050 8 6 4.3623 -0.1762 0.6423 9 1 4.2071 0.6607 1.3233 10 6 5.7761 -0.7313 0.8262 11 6 5.9890 -1.0946 2.2733 12 1 5.1950 -0.9448 2.9899 13 6 7.1971 -1.6180 2.6822 14 7 8.1621 -1.8053 1.8085 15 14 7.4607 -2.0689 4.4757 16 1 8.0103 -0.8977 5.2049 17 1 6.1645 -2.4657 5.0820 18 1 8.4167 -3.2015 4.5661 19 6 3.3282 -1.2848 0.9404 20 6 1.9986 -0.7306 1.1705 21 1 -0.3633 0.4830 0.9071 22 1 -0.3633 0.5443 -0.8718 23 1 -0.3633 -1.0270 -0.0354 24 1 1.2092 2.0249 -0.3534 25 1 2.2596 1.6217 1.0187 26 1 2.8974 1.5720 -1.9415 27 1 3.7600 2.3981 -0.6315 28 1 5.4308 0.9689 -2.2201 29 1 6.5043 0.0239 0.5304 30 1 5.9013 -1.6192 0.2065 31 1 8.0252 -1.5714 0.8771 32 1 3.2866 -1.9698 0.0937 33 1 3.6418 -1.8348 1.8278 34 1 1.3163 -1.5448 1.4145 35 1 2.0447 -0.0480 2.0191 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260705296.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:01 Heat of formation + Delta-G solvation = -85.375050 kcal Electronic energy + Delta-G solvation = -15176.913558 eV Core-core repulsion = 12787.179830 eV Total energy + Delta-G solvation = -2389.733728 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.66496 -37.82494 -36.09958 -34.20162 -32.68239 -30.37271 -27.65771 -25.85599 -24.94181 -23.70526 -21.51155 -20.58090 -18.89780 -18.03078 -16.86365 -16.40567 -16.01578 -15.65017 -15.43580 -15.12919 -14.38617 -14.22388 -13.85122 -13.70376 -13.52797 -13.02493 -12.85774 -12.60901 -12.35583 -12.11037 -11.94100 -11.88709 -11.56342 -11.47836 -11.05433 -10.71046 -10.49642 -10.46416 -9.28511 -8.63389 -6.31647 1.50677 1.61281 1.78195 2.58990 2.96149 3.21588 3.44734 3.81278 3.88979 4.05666 4.23021 4.27912 4.42113 4.44193 4.47848 4.64659 4.74984 4.76776 4.84124 4.97397 5.03648 5.10562 5.15662 5.20138 5.30175 5.35695 5.54316 5.70620 6.06208 6.10267 6.24017 6.25844 6.64225 7.04102 7.51276 8.76747 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037122 B = 0.008868 C = 0.007574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.092920 B = 3156.594905 C = 3696.173901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.548 5.548 3 C 0.059 3.941 4 C -0.132 4.132 5 C 0.120 3.880 6 H 0.045 0.955 7 O -0.587 6.587 8 C -0.059 4.059 9 H 0.046 0.954 10 C 0.035 3.965 11 C -0.607 4.607 12 H 0.052 0.948 13 C -0.046 4.046 14 N -0.943 5.943 15 Si 1.119 2.881 16 H -0.274 1.274 17 H -0.265 1.265 18 H -0.283 1.283 19 C -0.098 4.098 20 C 0.064 3.936 21 H 0.030 0.970 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.030 0.970 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.380 0.620 29 H -0.012 1.012 30 H -0.026 1.026 31 H 0.253 0.747 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.287 5.456 -4.040 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.273 5.273 3 C -0.070 4.070 4 C -0.170 4.170 5 C 0.061 3.939 6 H 0.063 0.937 7 O -0.394 6.394 8 C -0.078 4.078 9 H 0.065 0.935 10 C -0.002 4.002 11 C -0.645 4.645 12 H 0.070 0.930 13 C -0.242 4.242 14 N -0.581 5.581 15 Si 0.940 3.060 16 H -0.200 1.200 17 H -0.190 1.190 18 H -0.209 1.209 19 C -0.136 4.136 20 C -0.063 4.063 21 H 0.049 0.951 22 H 0.100 0.900 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.049 0.951 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.228 0.772 29 H 0.007 0.993 30 H -0.008 1.008 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -14.880 4.424 -2.827 15.779 hybrid contribution -1.003 1.126 -1.155 1.899 sum -15.882 5.550 -3.982 17.289 Atomic orbital electron populations 1.22526 0.85325 1.02933 1.01250 1.61577 1.09128 1.14758 1.41789 1.21855 0.96777 0.89972 0.98434 1.22594 0.95698 0.97385 1.01325 1.21606 0.82223 0.95830 0.94209 0.93665 1.86789 1.31711 1.87826 1.33044 1.20737 0.95622 0.97022 0.94376 0.93532 1.18841 0.93467 0.93137 0.94757 1.22542 1.01414 1.45217 0.95312 0.93001 1.27475 0.92650 0.94168 1.09915 1.70859 1.35392 1.47746 1.04090 0.82928 0.76571 0.77015 0.69439 1.19987 1.19005 1.20884 1.20452 0.93960 0.97487 1.01688 1.20981 0.96011 0.98447 0.90866 0.95088 0.89958 0.90757 0.89235 0.95147 0.89942 0.91631 0.77178 0.99336 1.00817 0.93810 0.92823 0.92067 0.90001 0.94987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.19 127.69 1.17 1.67 16 2 N -0.55 -14.14 4.48 -938.15 -4.21 -18.34 16 3 C 0.06 1.47 5.18 87.16 0.45 1.92 16 4 C -0.13 -3.62 5.71 31.40 0.18 -3.44 16 5 C 0.12 4.40 2.88 30.21 0.09 4.49 16 6 H 0.05 1.68 7.38 -2.39 -0.02 1.66 16 7 O -0.59 -23.22 11.28 -148.98 -1.68 -24.90 16 8 C -0.06 -2.60 1.75 -11.10 -0.02 -2.62 16 9 H 0.05 2.12 7.16 -2.39 -0.02 2.10 16 10 C 0.04 1.99 3.18 29.85 0.09 2.09 16 11 C -0.61 -36.39 8.16 25.60 0.21 -36.19 16 12 H 0.05 2.99 7.22 -2.91 -0.02 2.96 16 13 C -0.05 -2.80 5.46 84.65 0.46 -2.33 16 14 N -0.94 -62.24 13.65 21.45 0.29 -61.94 16 15 Si 1.12 52.49 29.90 68.60 2.05 54.54 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 19 C -0.10 -3.80 4.85 28.92 0.14 -3.66 16 20 C 0.06 1.92 4.96 83.95 0.42 2.34 16 21 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 22 H 0.08 1.24 8.01 -2.38 -0.02 1.22 16 23 H 0.07 1.27 8.05 -2.39 -0.02 1.25 16 24 H 0.09 1.72 7.49 -2.38 -0.02 1.70 16 25 H 0.03 0.85 6.51 -2.39 -0.02 0.83 16 26 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.38 10.53 9.04 -74.06 -0.67 9.86 16 29 H -0.01 -0.73 6.90 -2.39 -0.02 -0.75 16 30 H -0.03 -1.64 8.00 -2.39 -0.02 -1.66 16 31 H 0.25 17.19 7.22 -92.71 -0.67 16.53 16 32 H 0.05 2.08 7.59 -2.39 -0.02 2.07 16 33 H 0.06 2.66 6.66 -2.38 -0.02 2.64 16 34 H 0.08 2.12 7.74 -2.39 -0.02 2.10 16 35 H 0.03 0.98 7.24 -2.39 -0.02 0.97 16 Total: -1.00 -73.32 268.61 0.14 -73.17 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.49 Total: 13.21 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 3.19 Total: -35.74 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -3.91 Total: -80.29 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -1.68 Total: -24.90 kcal Atomic # 14 Polarization: 52.49 SS G_CDS: 2.05 Total: 54.54 kcal Total: -73.32 0.14 -73.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705296.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.201 kcal (2) G-P(sol) polarization free energy of solvation -73.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds