Wall clock time and date at job start Mon Mar 30 2020 20:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47941 * 111.00362 * 2 1 4 4 C 1.53913 * 113.33627 * 192.19226 * 3 2 1 5 5 C 1.50540 * 112.93837 * 317.74824 * 4 3 2 6 6 H 1.08997 * 109.67986 * 331.87122 * 5 4 3 7 7 O 1.42903 * 109.56736 * 211.56469 * 5 4 3 8 8 C 1.54520 * 108.86068 * 91.75352 * 5 4 3 9 9 H 1.09004 * 109.03835 * 43.33519 * 8 5 4 10 10 C 1.52998 * 109.04188 * 162.27593 * 8 5 4 11 11 C 1.50700 * 109.47271 * 184.99833 * 10 8 5 12 12 H 1.08001 * 120.00069 * 359.97438 * 11 10 8 13 13 C 1.37876 * 120.00276 * 180.02562 * 11 10 8 14 14 N 1.31519 * 119.99559 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00174 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47332 * 89.99532 * 15 13 11 17 17 H 1.48500 * 109.47022 * 209.99626 * 15 13 11 18 18 H 1.48500 * 109.47066 * 329.99291 * 15 13 11 19 19 C 1.45881 * 111.67041 * 282.77069 * 8 5 4 20 20 C 1.44310 * 110.99746 * 232.59281 * 2 1 3 21 21 H 1.08995 * 109.47151 * 187.40880 * 1 2 3 22 22 H 1.09002 * 109.46655 * 307.40672 * 1 2 3 23 23 H 1.08997 * 109.47203 * 67.40280 * 1 2 3 24 24 H 1.09005 * 108.71070 * 313.18608 * 3 2 1 25 25 H 1.08996 * 108.71058 * 71.19064 * 3 2 1 26 26 H 1.09001 * 108.78733 * 196.85911 * 4 3 2 27 27 H 1.08996 * 108.79130 * 78.64360 * 4 3 2 28 28 H 0.96700 * 114.00311 * 60.62757 * 7 5 4 29 29 H 1.08995 * 109.47464 * 305.00270 * 10 8 5 30 30 H 1.09006 * 109.46487 * 65.00004 * 10 8 5 31 31 H 0.96997 * 119.99716 * 180.02562 * 14 13 11 32 32 H 1.09001 * 108.83952 * 182.31580 * 19 8 5 33 33 H 1.09001 * 108.83917 * 300.78166 * 19 8 5 34 34 H 1.09001 * 109.69257 * 101.63971 * 20 2 1 35 35 H 1.08998 * 109.69419 * 341.05257 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3811 0.0000 4 6 3.5074 1.4552 -0.2985 5 6 4.2993 0.3908 0.4131 6 1 3.7909 0.1101 1.3355 7 8 5.6038 0.8882 0.7178 8 6 4.4182 -0.8435 -0.5089 9 1 4.6460 -0.5104 -1.5214 10 6 5.5581 -1.7327 -0.0080 11 6 5.7633 -2.8753 -0.9689 12 1 5.1424 -2.9592 -1.8487 13 6 6.7429 -3.8142 -0.7245 14 7 7.4986 -3.7123 0.3471 15 14 6.9977 -5.2301 -1.9160 16 1 7.9846 -4.8336 -2.9523 17 1 7.5048 -6.4140 -1.1767 18 1 5.7061 -5.5685 -2.5661 19 6 3.1840 -1.6210 -0.5300 20 6 1.9861 -0.8184 -1.0702 21 1 -0.3633 -1.0190 0.1325 22 1 -0.3633 0.6243 0.8164 23 1 -0.3633 0.3949 -0.9487 24 1 1.4650 1.9608 -0.7528 25 1 1.8139 1.8268 0.9772 26 1 3.8784 2.4330 0.0086 27 1 3.6585 1.3463 -1.3724 28 1 5.6040 1.6647 1.2941 29 1 6.4740 -1.1457 0.0594 30 1 5.3057 -2.1267 0.9765 31 1 8.1880 -4.3727 0.5189 32 1 3.3318 -2.4990 -1.1587 33 1 2.9573 -1.9491 0.4845 34 1 2.3110 -0.1832 -1.8943 35 1 1.2116 -1.5027 -1.4164 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260705298.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:04 Heat of formation + Delta-G solvation = -57.100411 kcal Electronic energy + Delta-G solvation = -15089.475243 eV Core-core repulsion = 12700.967596 eV Total energy + Delta-G solvation = -2388.507647 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.19229 -36.26320 -34.31848 -32.15949 -31.36662 -28.56115 -26.27506 -24.26791 -23.85614 -21.68298 -19.66736 -19.18329 -16.66610 -16.32023 -15.44800 -15.17085 -14.67140 -14.34953 -13.66986 -13.23563 -12.82978 -12.74956 -12.39681 -12.26967 -11.80516 -11.50792 -11.08598 -10.91683 -10.84675 -10.64807 -10.49972 -10.25605 -10.03361 -9.56449 -9.35780 -8.88144 -8.72887 -8.20299 -7.97961 -5.85796 -3.86903 3.38740 3.44702 3.47309 4.07195 4.55556 4.75280 5.09040 5.25222 5.29542 5.41999 5.43484 5.49884 5.58683 5.63881 5.84860 5.86669 5.94522 5.98915 6.02143 6.26427 6.40203 6.65583 6.84740 7.02007 7.20393 7.25330 7.39482 7.50242 7.88369 8.10304 8.24270 8.33125 8.58804 9.21591 9.74984 11.25463 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038260 B = 0.008505 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.661666 B = 3291.289882 C = 3814.807949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.552 5.552 3 C 0.069 3.931 4 C -0.151 4.151 5 C 0.114 3.886 6 H 0.056 0.944 7 O -0.555 6.555 8 C -0.069 4.069 9 H 0.052 0.948 10 C 0.033 3.967 11 C -0.515 4.515 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.887 3.113 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.275 1.275 19 C -0.099 4.099 20 C 0.057 3.943 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.019 0.981 24 H 0.027 0.973 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.359 0.641 29 H 0.030 0.970 30 H 0.012 0.988 31 H 0.258 0.742 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.931 9.520 -0.471 15.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.277 5.277 3 C -0.059 4.059 4 C -0.190 4.190 5 C 0.056 3.944 6 H 0.074 0.926 7 O -0.358 6.358 8 C -0.087 4.087 9 H 0.070 0.930 10 C -0.004 4.004 11 C -0.554 4.554 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.534 5.534 15 Si 0.715 3.285 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.200 1.200 19 C -0.136 4.136 20 C -0.071 4.071 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.037 0.963 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.204 0.796 29 H 0.048 0.952 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.459 8.714 -0.365 14.400 hybrid contribution -0.298 0.100 -1.055 1.100 sum -11.757 8.814 -1.419 14.762 Atomic orbital electron populations 1.22361 0.87674 1.02098 0.99571 1.60787 1.06698 1.12232 1.48013 1.22285 0.94699 0.88591 1.00310 1.22230 0.94322 1.00053 1.02347 1.21608 0.81914 0.93227 0.97696 0.92589 1.86746 1.28934 1.48952 1.71162 1.20134 0.97719 0.93690 0.97195 0.92987 1.19047 0.92756 0.92872 0.95716 1.21332 1.16777 1.09146 1.08130 0.92819 1.25009 0.96148 0.98011 0.95317 1.69990 1.21248 1.35796 1.26354 0.86685 0.78295 0.82308 0.81227 1.20844 1.21361 1.19998 1.20485 0.92291 0.98475 1.02395 1.22026 0.98037 0.95524 0.91551 0.91360 0.91980 0.96266 0.95477 0.91476 0.91540 0.91798 0.79606 0.95186 0.96961 0.93231 0.90251 0.91729 0.94322 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.27 60.07 0.56 0.91 16 2 N -0.55 -7.89 4.25 -242.93 -1.03 -8.93 16 3 C 0.07 0.89 5.42 -2.77 -0.02 0.88 16 4 C -0.15 -2.20 5.01 -27.48 -0.14 -2.34 16 5 C 0.11 2.09 2.80 -27.16 -0.08 2.01 16 6 H 0.06 1.05 7.80 -51.93 -0.40 0.64 16 7 O -0.55 -10.58 11.83 -35.23 -0.42 -11.00 16 8 C -0.07 -1.48 1.63 -93.19 -0.15 -1.63 16 9 H 0.05 1.16 7.59 -51.93 -0.39 0.76 16 10 C 0.03 0.90 4.16 -27.88 -0.12 0.78 16 11 C -0.52 -14.91 8.30 -34.44 -0.29 -15.19 16 12 H 0.05 1.49 6.82 -52.49 -0.36 1.13 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -27.88 13.29 55.43 0.74 -27.15 16 15 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 19 C -0.10 -1.91 4.48 -29.59 -0.13 -2.05 16 20 C 0.06 0.88 5.42 -4.70 -0.03 0.86 16 21 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 22 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 23 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.03 0.32 8.02 -51.93 -0.42 -0.09 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.82 7.87 -51.93 -0.41 0.42 16 27 H 0.06 0.99 6.66 -51.93 -0.35 0.64 16 28 H 0.36 4.84 8.94 45.56 0.41 5.24 16 29 H 0.03 0.90 7.14 -51.93 -0.37 0.53 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 32 H 0.08 1.66 6.44 -51.93 -0.33 1.33 16 33 H 0.06 1.32 8.08 -51.93 -0.42 0.90 16 34 H 0.04 0.60 6.79 -51.93 -0.35 0.25 16 35 H 0.06 0.87 7.57 -51.93 -0.39 0.48 16 LS Contribution 270.80 15.07 4.08 4.08 Total: -1.00 -32.40 270.80 -7.17 -39.57 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.03 Total: 0.47 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -0.48 Total: -14.22 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.30 Total: -36.07 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.42 Total: -11.00 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.40 -7.17 -39.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705298.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.531 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds